Contig 012179:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006M05Sequence392012179 (2)ref|XP_011071992.1|7e-31PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X
JMSF048J06Sequence656012179 (2)ref|XP_011071992.1|3e-76PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X748002997 (3)ref|XP_010663078.1|9e-69PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X

Alignment

This contig is upended


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JMSF048J06+               TTTTTGGCACGCCACGATAAGATCTGTATCTTTTGGGAATTGTTCCTGGACTTTTG
                      ____________________________________________________________
consensus                 TTTTTGGCACGCCACGATAAGATCTGTATCTTTTGGGAATTGTTCCTGGACTTTTG
 
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JMSF048J06+           ATAAGAATTGACTATTATAGGACAAGGTAGGCACACCACTCCACCAGCCTCCCATCATAA
                      ____________________________________________________________
consensus             ATAAGAATTGACTATTATAGGACAAGGTAGGCACACCACTCCACCAGCCTCCCATCATAA
 
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JMSF048J06+           AATTTGTAACCTTCATGGAAAGTGTACCAGGATCTAATCTAGTATCAACCTCAAAAATTG
                      ____________________________________________________________
consensus             AATTTGTAACCTTCATGGAAAGTGTACCAGGATCTAATCTAGTATCAACCTCAAAAATTG
 
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JMSF006M05+                                         TTTCACGTTCAATTGATGGGCGAACATCAA
JMSF048J06+           GAATCCAGGCTGAGCCTTTCACCCGTGCCTTTTCACGTTCAATTGATGGGCGAACATCAA
                      ____________________________________________________________
consensus             GAATCCAGGCTGAGCCTTTCACCCGTGCCTTTTCACGTTCAATTGATGGGCGAACATCAA
 
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JMSF006M05+           GCAGAGTTTTGTTTGAGAGCTGAATTGCATAGCCAGCTTCCCTTGGAGTGAGCATCTTTA
JMSF048J06+           GCAGAGTTTTGTTTGAGAGCTGAATTGCATAGCCAGCTTCCCTTGGAGTGAGCATCTTTA
                      ____________________________________________________________
consensus             GCAGAGTTTTGTTTGAGAGCTGAATTGCATAGCCAGCTTCCCTTGGAGTGAGCATCTTTA
 
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JMSF006M05+           CCTTCCCCTCCCTGATCAAAGCATCCCATCTCTTTCTGGCGGCAGCCATATCTTTCATTT
JMSF048J06+           CCTTCCCCTCCCTGATCAAAGCATCCCATCTCTTTCTGGCGGCAGCCATATCTTTCATTT
                      ____________________________________________________________
consensus             CCTTCCCCTCCCTGATCAAAGCATCCCATCTCTTTCTGGCGGCAGCCATATCTTTCATTT
 
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JMSF006M05+           GCTTCAACTCATACTCTTCTTCCACTTGTTGCATTCTTATTCCACTTCTGCACTGAAACT
JMSF048J06+           GCTTCAACTCATACTCTTCTTCCACTTGTTGCATTCTTATTCCACTTCTGCACTGAAACT
                      ____________________________________________________________
consensus             GCTTCAACTCATACTCTTCTTCCACTTGTTGCATTCTTATTCCACTTCTGCACTGAAACT
 
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JMSF006M05+           TGACGAGTGAAACTCCGGATTTGAGAGACAACGGTGCTAATGAAGGTGCGAGGCAACTGG
JMSF048J06+           TGACGAGTGAAACTCCGGATTTGAGAGACAACGGTGCTAATGAAGGTGCGAGGCAACTGG
                      ____________________________________________________________
consensus             TGACGAGTGAAACTCCGGATTTGAGAGACAACGGTGCTAATGAAGGTGCGAGGCAACTGG
 
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JMSF006M05+           CGGAACCTAGAAGATTCCATCTTTGTTGTTGTCGAGGACTGGTCATGAGAACAGAAAGTG
JMSF048J06+           CGGAACCTAGAAGATTCCATCTTTGTTGTTGTCGAGGACTGGTCATGAGAACAGAAAGTG
                      ____________________________________________________________
consensus             CGGAACCTAGAAGATTCCATCTTTGTTGTTGTCGAGGACTGGTCATGAGAACAGAAAGTG
 
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JMSF006M05+           GGGGGAGTCCATGGCCAAGGCCAAGAGCTTCCATTGTTACAGTTACACCT          
JMSF048J06+           GGGGGAGTCCATGGCCAAGGCCAAGAGCTTCCATTGTTACAGTTACACCTGAGAACAGAA
                      ____________________________________________________________
consensus             GGGGGAGTCCATGGCCAAGGCCAAGAGCTTCCATTGTTACAGTTACACCTGAGAACAGAA
 
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JMSF048J06+           AGGAGATTTGAATTTGCTTATCCTTTCCTAAAATCTTTTTATTGGTTAAATGATCAGACC
                      ____________________________________________________________
consensus             AGGAGATTTGAATTTGCTTATCCTTTCCTAAAATCTTTTTATTGGTTAAATGATCAGACC