Contig 012170:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF047J03Sequence672012170 (2)ref|XP_009620625.1|1e-94PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48 [Nicotiana tomentosi753012170 (2)ref|XP_009620625.1|2e-25PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48 [Nicotiana tomentosi

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-                                  ATTCTCATTAGTCTAAAATACATATTTCACAGGTCA
                      ____________________________________________________________
consensus                                     ATTCTCATTAGTCTAAAATACATATTTCACAGGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          ATAAGCAAAAGTAATGTACAAAGTACTACAGGAGCAAAGATGATCTGTACCTCATATTTT
                      ____________________________________________________________
consensus             ATAAGCAAAAGTAATGTACAAAGTACTACAGGAGCAAAGATGATCTGTACCTCATATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          CTAAACATTGCCATCTTGCTTGGTTGGTGCACAATCCAAATAAAGCTGCATTACTTCTAA
                      ____________________________________________________________
consensus             CTAAACATTGCCATCTTGCTTGGTTGGTGCACAATCCAAATAAAGCTGCATTACTTCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          CCTCAGTTCAATAAAACTAGCATAATGCAGATTCTTCAACAACCAGGACTCCCTTAATTC
                      ____________________________________________________________
consensus             CCTCAGTTCAATAAAACTAGCATAATGCAGATTCTTCAACAACCAGGACTCCCTTAATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          ACTTTCAACAACATTTTCAGCCATCTAAAACTTAATTTACATGCTCAATTCTCTGTTTGA
                      ____________________________________________________________
consensus             ACTTTCAACAACATTTTCAGCCATCTAAAACTTAATTTACATGCTCAATTCTCTGTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          AACTCATAACTTCCATCACTCTGCAGACTCATATCAAACACTGCTGATTTGGAATGATTA
                      ____________________________________________________________
consensus             AACTCATAACTTCCATCACTCTGCAGACTCATATCAAACACTGCTGATTTGGAATGATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          TATTTTGTTTTCCCATTTTGTCTTCTAAATTCGTTTGCACTATTAACTTTATCAGAACTC
                      ____________________________________________________________
consensus             TATTTTGTTTTCCCATTTTGTCTTCTAAATTCGTTTGCACTATTAACTTTATCAGAACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          AATCTCTCCAAGTTAGTGTTATACTTCCTCCGGTTCCCTTTCCTGAAATTATTCTTCATA
                      ____________________________________________________________
consensus             AATCTCTCCAAGTTAGTGTTATACTTCCTCCGGTTCCCTTTCCTGAAATTATTCTTCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          ACCTTATCATTTTTATTGTTGTAAGGCATTCCCTTCGAATTCTGCTCACCTGAATGAGTA
                      ____________________________________________________________
consensus             ACCTTATCATTTTTATTGTTGTAAGGCATTCCCTTCGAATTCTGCTCACCTGAATGAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          ACATTTCTTTCCCTCCTGTTCAAAGAATTAGTCTTGACCGTGTCCCATTCGAAGCTGGAT
JMSF047J03+                                                           TCGAAGCTGGAT
                      ____________________________________________________________
consensus             ACATTTCTTTCCCTCCTGTTCAAAGAATTAGTCTTGACCGTGTCCCATTCGAAGCTGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          TTGTTCCTTCCTAATGTCCTATTATCTTCATTCTCATCATCAAACCCATCACTGATATTC
JMSF047J03+           TTGTTCCTTCCTAATGTCCTATTATCTTCATTCTCATCATCAAACCCATCACTGATATTC
                      ____________________________________________________________
consensus             TTGTTCCTTCCTAATGTCCTATTATCTTCATTCTCATCATCAAACCCATCACTGATATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          TCAACTTTTCCATAGGGTTTAATGCTATGAACAACACCTTTGGGGAAAAACCTAGCTGAG
JMSF047J03+           TCAACTTTTCCATAGGGTTTAATGCTATGAACAACACCTTTGGGGAAAAACCTAGCTGAG
                      ____________________________________________________________
consensus             TCAACTTTTCCATAGGGTTTAATGCTATGAACAACACCTTTGGGGAAAAACCTAGCTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J03-          GGGAGATCAGCTTCGGATTTGAGCAATTCGGGTCCGTCTTTCTCGGACCACATATCA   
JMSF047J03+           GGGAGATCAGCTTCGGATTTGAGCAATTCGGGTCCGTCTTTCTCGGACCACATATCAAAC
                      ____________________________________________________________
consensus             GGGAGATCAGCTTCGGATTTGAGCAATTCGGGTCCGTCTTTCTCGGACCACATATCAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J03+           CCTCCCGGCCTCTGGAACCGGTCAGCCAATACCTTCAGTTGTTCATCGGCGCTGACGGAG
                      ____________________________________________________________
consensus             CCTCCCGGCCTCTGGAACCGGTCAGCCAATACCTTCAGTTGTTCATCGGCGCTGACGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J03+           AACAAAGTGGGTGCCTTCTCAACCATTTCCCATGGCCTCTCGAGCTCGGAGATGGCGGCT
                      ____________________________________________________________
consensus             AACAAAGTGGGTGCCTTCTCAACCATTTCCCATGGCCTCTCGAGCTCGGAGATGGCGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J03+           TTGAGCTCGGTACGTTTGCGCATCTCGTATATCTGGCGTTCACGGGCCAGCCGGGCTTTA
                      ____________________________________________________________
consensus             TTGAGCTCGGTACGTTTGCGCATCTCGTATATCTGGCGTTCACGGGCCAGCCGGGCTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J03+           AGGAGCTGCTTGGACTTCTTCATTTGCATACGCTTCCACTGCCACTTGGAAACCCCTCCT
                      ____________________________________________________________
consensus             AGGAGCTGCTTGGACTTCTTCATTTGCATACGCTTCCACTGCCACTTGGAAACCCCTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J03+           GGATAGGTCCTGGGGCCTCCACCCATCCGAATCGTCGTCGTTTTGAAGGGAACATTGGCG
                      ____________________________________________________________
consensus             GGATAGGTCCTGGGGCCTCCACCCATCCGAATCGTCGTCGTTTTGAAGGGAACATTGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J03+           GTGGTTGCTGGGGACAGCCTGAGTTGGGAGAATTTGGTGTCGAGGAATAGGCTTGCAGGA
                      ____________________________________________________________
consensus             GTGGTTGCTGGGGACAGCCTGAGTTGGGAGAATTTGGTGTCGAGGAATAGGCTTGCAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J03+           GAAGAAAGAGATACGGATGATGAAAGGGATTGTTGGATTGGTTTCATGGCGAAAGATGAC
                      ____________________________________________________________
consensus             GAAGAAAGAGATACGGATGATGAAAGGGATTGTTGGATTGGTTTCATGGCGAAAGATGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J03+           TGAAGGACCGCCATTTTCTTTCTCAAAAAAACCAGAAATTTGATTGCTGATGGGATGTTC
                      ____________________________________________________________
consensus             TGAAGGACCGCCATTTTCTTTCTCAAAAAAACCAGAAATTTGATTGCTGATGGGATGTTC