Contig 012168:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002I13Sequence454012168 (2)ref|XP_009623304.1|9e-07PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230698014109 (3)emb|CDP10226.1|5e-108unnamed protein product [Coffea canephora]
JMSF047E10Sequence706012168 (2)ref|XP_009623304.1|6e-09PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230770014109 (3)emb|CDP10226.1|8e-117unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002I13+                                   GAACCCATCAGTGTTGGGTTGCTGGCAAACCAATGG
JMSF047E10+                         TGGAGACAAAGAACCCATCAGTGTTGGGTTGCTGGCAANCCAATGG
                      ____________________________________________________________
consensus                           TGGAGACAAAGAACCCATCAGTGTTGGGTTGCTGGCAAACCAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002I13+           CNTAAAACACACAGAAACCACCAGAAAAAACCCCAAAATTCCAACCCCCATCAGAGTATT
JMSF047E10+           CCTAAAACACACAGAAACCACCAGAAAAAACCCCAAAATTCCAACCCCCATCAGAGTATT
                      ____________________________________________________________
consensus             CCTAAAACACACAGAAACCACCAGAAAAAACCCCAAAATTCCAACCCCCATCAGAGTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002I13+           AGGCGCCAATCTGTACGGCTACTGTTCTTTAAAAGGGAAATTTCTTAATTTCCCCTCAGA
JMSF047E10+           AGGCGCCAATCTGTACGGCTACTGTTCTTTAAAAGGGAAATTTCTTAATTTCCCCTCAGA
                      ____________________________________________________________
consensus             AGGCGCCAATCTGTACGGCTACTGTTCTTTAAAAGGGAAATTTCTTAATTTCCCCTCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002I13+           ATTGAAAAACACCAACAAGTCAACAACCCCAAAAAGTCTCCTTTCTCAGACTATTACCAC
JMSF047E10+           ATTGAAAAACACCAACAAGTCAACAACCCCAAAAAGTCTCCTTTCTCAGACTATTACCAC
                      ____________________________________________________________
consensus             ATTGAAAAACACCAACAAGTCAACAACCCCAAAAAGTCTCCTTTCTCAGACTATTACCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002I13+           TCTCTTTTCAAACCTTATCAAAAACCAACACAGATTCCAAAGACATCTGCTAAAACCAAA
JMSF047E10+           TCTCTTTTCAAACCTTATCAAAAACCAACACAGATTCCAAAGACATCTGCTAAAACCAAA
                      ____________________________________________________________
consensus             TCTCTTTTCAAACCTTATCAAAAACCAACACAGATTCCAAAGACATCTGCTAAAACCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002I13+           ACCACATAACATAAAATAATTTTATTTCTGGTCAAAAATCAAATCTTGAGCAGTGGGTTT
JMSF047E10+           ACCACATAACATAAAATAATTTTATTTCTGGTCAAAAATCAAATCTTGAGCAGTGGGTTT
                      ____________________________________________________________
consensus             ACCACATAACATAAAATAATTTTATTTCTGGTCAAAAATCAAATCTTGAGCAGTGGGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002I13+           GAGCCAAGAACCAGTGGAAGTGGCACACAAGTGAAAGGCTTGTCAGAGAACCATGCATGT
JMSF047E10+           GAGCCAAGAACCAGTGGAAGTGGCACACAAGTGAAAGGCTTGTCAGAGAACCATGCATGT
                      ____________________________________________________________
consensus             GAGCCAAGAACCAGTGGAAGTGGCACACAAGTGAAAGGCTTGTCAGAGAACCATGCATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002I13+           CTAATGAACCCAACACAGAAAACAAAACCCAAAGCTGAATAGCACTTGAGATGCTC    
JMSF047E10+           CTAATGAACCCAACACAGAAAACAAAACCCAAAGCTGAATAGCACTTGAGATGCTCCAAA
                      ____________________________________________________________
consensus             CTAATGAACCCAACACAGAAAACAAAACCCAAAGCTGAATAGCACTTGAGATGCTCCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E10+           ATTCTTAGAACATCCCTCCTCAAATGAAACAACAAAAGCTACTTTGAAGTGAAACAGAGA
                      ____________________________________________________________
consensus             ATTCTTAGAACATCCCTCCTCAAATGAAACAACAAAAGCTACTTTGAAGTGAAACAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E10+           ACACAAAAGCAATTTTCTTTTTTAACTTTGTTTTTAGAATCTAGTTGGGGGCAGCAAATT
                      ____________________________________________________________
consensus             ACACAAAAGCAATTTTCTTTTTTAACTTTGTTTTTAGAATCTAGTTGGGGGCAGCAAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E10+           GACACTGGTGAGGTAGGGGTGAGGCATTAAAGTTTGAGGTTCATAAATGAAAAGGAATGA
                      ____________________________________________________________
consensus             GACACTGGTGAGGTAGGGGTGAGGCATTAAAGTTTGAGGTTCATAAATGAAAAGGAATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047E10+           AGGAAAGGGGCTTTTGGGTGATGAATAATGGATTTAGCAGAGAGCTGTTGGTGGAAAATC
                      ____________________________________________________________
consensus             AGGAAAGGGGCTTTTGGGTGATGAATAATGGATTTAGCAGAGAGCTGTTGGTGGAAAATC