Contig 012164:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF046J20Sequence655012164 (2)ref|XP_004241297.1|4e-97PREDICTED: uncharacterized RNA-binding protein C1827.05c [Solanum lycopersicum]701012164 (2)ref|XP_004241297.1|3e-80PREDICTED: uncharacterized RNA-binding protein C1827.05c [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF046J20-                 AACCTACATAGCATTTGCATCCAAAAAAAATCATAGTTTTGAGTACAACTACT
                      ____________________________________________________________
consensus                    AACCTACATAGCATTTGCATCCAAAAAAAATCATAGTTTTGAGTACAACTACT
 
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rJMSF046J20-          GGGCATACCGCCTGATCCAAATACAAAATTATATGGACCTATGCCAGGGATCTAGAAACA
                      ____________________________________________________________
consensus             GGGCATACCGCCTGATCCAAATACAAAATTATATGGACCTATGCCAGGGATCTAGAAACA
 
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rJMSF046J20-          AGATACACAAAACTGTTTTGAAAAGGCCATTGCTTAAGCTTCCCATACTGCGCACAGATC
                      ____________________________________________________________
consensus             AGATACACAAAACTGTTTTGAAAAGGCCATTGCTTAAGCTTCCCATACTGCGCACAGATC
 
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rJMSF046J20-          CATACTTCAAATTGCCAAAAAAAAAAGTCCTAATCTTCATTAAATTTAATCTTCTTTGGA
JMSF046J20+                TTCAAATTGCCAAAAAAAAAAGTCCTAATCTTCATTAAATTTAATCTTCTTTGGA
                      ____________________________________________________________
consensus             CATACTTCAAATTGCCAAAAAAAAAAGTCCTAATCTTCATTAAATTTAATCTTCTTTGGA
 
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rJMSF046J20-          GCANACTCAACGTAACCAACAATTTCNGGGCATTCATAATCTATACCAGCAGCTGCAATC
JMSF046J20+           GCAGACTCAACGTAACCAACAATTTCTGGGCATTCATAATCTATACCAGCAGCTGCAATC
                      ____________________________________________________________
consensus             GCAGACTCAACGTAACCAACAATTTCTGGGCATTCATAATCTATACCAGCAGCTGCAATC
 
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rJMSF046J20-          TTCTTACGCCTCTNGCGATCCCGTTTCTTTATTCCTTCAACCAATTTCTTGNGCTCTTCC
JMSF046J20+           TTCTTACGCCTCTTGCGATCCCGTTTCTTTATTCCTTCAACCAATTTCTTGTGCTCTTCC
                      ____________________________________________________________
consensus             TTCTTACGCCTCTTGCGATCCCGTTTCTTTATTCCTTCAACCAATTTCTTGTGCTCTTCC
 
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rJMSF046J20-          AANGTCCGTTCCTTGTTGNGAATCTTTCGTTGAATATTAACCCAGTCCAAAGGATTGTAC
JMSF046J20+           AATGTCCGTTCCTTGTTGTGAATCTTTCGTTGAATATTAACCCAGTCCAAAGGATTGTAC
                      ____________________________________________________________
consensus             AATGTCCGTTCCTTGTTGTGAATCTTTCGTTGAATATTAACCCAGTCCAAAGGATTGTAC
 
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rJMSF046J20-          CAACGGTTCACACCATTCCACAGTTTTGGATGAACNCGTTCGGGNGGAACAAGTTGAACT
JMSF046J20+           CAACGGTTCACACCATTCCACAGTTTTGGATGAACACGTTCGGGTGGAACAAGTTGAACT
                      ____________________________________________________________
consensus             CAACGGTTCACACCATTCCACAGTTTTGGATGAACACGTTCGGGTGGAACAAGTTGAACT
 
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rJMSF046J20-          TGCAAGACATGCTCAAACAATAGATAATTATGCATTGTTTCANACNCAATTTTTGCAACC
JMSF046J20+           TGCAAGACATGCTCAAACAATAGATAATTATGCATTGTTTCAGACACAATTTTTGCAACC
                      ____________________________________________________________
consensus             TGCAAGACATGCTCAAACAATAGATAATTATGCATTGTTTCAGACACAATTTTTGCAACC
 
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rJMSF046J20-          TCAGGGGACTCAAATTCTATGAAGCCAAAATGCTTGGATTTTCCAGTCTTCTTATTCCTA
JMSF046J20+           TCAGGGGACTCAAATTCTATGAAGCCAAAATGCTTGGATTTTCCAGTCTTCTTATTCCTA
                      ____________________________________________________________
consensus             TCAGGGGACTCAAATTCTATGAAGCCAAAATGCTTGGATTTTCCAGTCTTCTTATTCCTA
 
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rJMSF046J20-          GCAATTCTAAGTCGCTTGATAGTACCAAATTGCTTAAAAAATCCTTCCATTTCATTCTCA
JMSF046J20+           GCAATTCTAAGTCGCTTGATAGTACCAAATTGCTTAAAAAATCCTTCCATTTCATTCTCA
                      ____________________________________________________________
consensus             GCAATTCTAAGTCGCTTGATAGTACCAAATTGCTTAAAAAATCCTTCCATTTCATTCTCA
 
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rJMSF046J20-          TAAAATCCATGTGGAATTCTACCAATGTACAAAACTGTNGCTTTAG              
JMSF046J20+           TAAAATCCATGTGGAATTCTACCAATGTACAAAACTGTTGCTTTAGTGTCTCTTAGTTCA
                      ____________________________________________________________
consensus             TAAAATCCATGTGGAATTCTACCAATGTACAAAACTGTTGCTTTAGTGTCTCTTAGTTCA
 
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JMSF046J20+           GTAACTGGAATCTTCCTTACTGGTCCACCTTCCAATGGCAGAAAATCGGGAGCTTCATCC
                      ____________________________________________________________
consensus             GTAACTGGAATCTTCCTTACTGGTCCACCTTCCAATGGCAGAAAATCGGGAGCTTCATCC
 
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JMSF046J20+           CTGGATTTCTTCACTGTCCTCATCAGATGCTCTGGTTTGGCGATATTGGAGAGATCGGCC
                      ____________________________________________________________
consensus             CTGGATTTCTTCACTGTCCTCATCAGATGCTCTGGTTTGGCGATATTGGAGAGATCGGCC