Contig 012163:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF046J08-                                                                     C
                      ____________________________________________________________
consensus                                                                        C
 
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rJMSF046J08-          TCCCTTGGCTTGTTCATTCANTGTGCCCACCATTAATAAAGCAACTCATCAGCTAGCACA
                      ____________________________________________________________
consensus             TCCCTTGGCTTGTTCATTCANTGTGCCCACCATTAATAAAGCAACTCATCAGCTAGCACA
 
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rJMSF046J08-          AATCACAATAAAAAAATAAGGGATGTCTGGGGTGGGGGTGTTTAACATGTTGATAAATAA
                      ____________________________________________________________
consensus             AATCACAATAAAAAAATAAGGGATGTCTGGGGTGGGGGTGTTTAACATGTTGATAAATAA
 
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rJMSF046J08-          TCAGCTAAATACATGGCCACTATACCAAAAAATTAAATTAAAAAATAAATTGACTGTAAC
                      ____________________________________________________________
consensus             TCAGCTAAATACATGGCCACTATACCAAAAAATTAAATTAAAAAATAAATTGACTGTAAC
 
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rJMSF046J08-          AAAATGTCATTGTTCATCAATAACCCAGTATGTGCCTAGTAACATATATGATAAAGGCAA
                      ____________________________________________________________
consensus             AAAATGTCATTGTTCATCAATAACCCAGTATGTGCCTAGTAACATATATGATAAAGGCAA
 
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rJMSF046J08-          CACAAAATCCTGCAGCACCAAGAAGCACAATGATCCTGACCAAGAGGGATGATATGAATG
JMSF046J08+                                                 ACCAAGAGGGATGATATGAATG
                      ____________________________________________________________
consensus             CACAAAATCCTGCAGCACCAAGAAGCACAATGATCCTGACCAAGAGGGATGATATGAATG
 
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rJMSF046J08-          CGTTCTTAAAAACGCAATCCCATAACCAAAACCAGAGAGCAGAAAAGCAGAATCCCAGAG
JMSF046J08+           CGTTNTTAAAAACGCAATCCCATAACCAAAACCAGAGAGCAGAAAAGCAGAATCCCAGAG
                      ____________________________________________________________
consensus             CGTTCTTAAAAACGCAATCCCATAACCAAAACCAGAGAGCAGAAAAGCAGAATCCCAGAG
 
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rJMSF046J08-          CAGCACCAACAAGTACTTGGCTGATTGAGTGAAGTCTCTGCGAAATTCTTAGCCATGAAA
JMSF046J08+           CAGCACCAACAAGTACTTGGCTGATTGAGTGAAGTCTCTGCGAAATTNTTAGCCATGAAA
                      ____________________________________________________________
consensus             CAGCACCAACAAGTACTTGGCTGATTGAGTGAAGTCTCTGCGAAATTCTTAGCCATGAAA
 
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rJMSF046J08-          AATAAGAGGCCAGTGCAAAGATAAGCCAGCTGAGTGCTGCAGTCCAACCATTCAGTCCAA
JMSF046J08+           AATAAGAGGCCAGTGCAAAGATAAGCCAGCTGAGTGCTGCAGTCCAACCATTCAGTCCAA
                      ____________________________________________________________
consensus             AATAAGAGGCCAGTGCAAAGATAAGCCAGCTGAGTGCTGCAGTCCAACCATTCAGTCCAA
 
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rJMSF046J08-          AACATTGAACCATTGAGACAACAGAGAATGTAGCTATGAAGAATATAGCTTGGGCGTGTG
JMSF046J08+           AACATTGAACCATTGAGACAACAGAGAATGTAGCTATGAAGAATATAGCTTGGGCGTGTG
                      ____________________________________________________________
consensus             AACATTGAACCATTGAGACAACAGAGAATGTAGCTATGAAGAATATAGCTTGGGCGTGTG
 
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rJMSF046J08-          AAGATGGCATTCCGGGATCTGATCTTAACGTGGTAGAAGGCCGTTTTTGGTTCAACATCC
JMSF046J08+           AAGATGGCATTCCGGGATCTGATCTTAACGTGGTAGAAGGCCGTTTTTGGTTCAACATCC
                      ____________________________________________________________
consensus             AAGATGGCATTCCGGGATCTGATCTTAACGTGGTAGAAGGCCGTTTTTGGTTCAACATCC
 
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rJMSF046J08-          TCTTCAGAATGGTTGAGAGAGCGGAATTTATAGCTGAGCCCATTGCCGCCCATAGTGATT
JMSF046J08+           TCTTCAGAATGGTTGAGAGAGCGGAATTTATAGCTGAGCCCATTGCCGCCCATAGTGATT
                      ____________________________________________________________
consensus             TCTTCAGAATGGTTGAGAGAGCGGAATTTATAGCTGAGCCCATTGCCGCCCATAGTGATT
 
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rJMSF046J08-          CTGCATCATGCCTCCATACCAGGATTGCGCCAAACACTGCAACCACCACCCATTTACTCA
JMSF046J08+           CTGCATCATGCCTCCATACCAGGATTGCGCCAAACACTGCAACCACCACCCATTTACTCA
                      ____________________________________________________________
consensus             CTGCATCATGCCTCCATACCAGGATTGCGCCAAACACTGCAACCACCACCCATTTACTCA
 
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rJMSF046J08-          TATTGTTGAGA                                                 
JMSF046J08+           TATTGTTGAGAGTGGCTTCAAGCTGAGAAAATCCATTATTAATAAGGTGTTGTTGTTCGA
                      ____________________________________________________________
consensus             TATTGTTGAGAGTGGCTTCAAGCTGAGAAAATCCATTATTAATAAGGTGTTGTTGTTCGA
 
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JMSF046J08+           AACCAGTGGGAAGAACACTGTCCTCATTCTCCATTCCAACGGTGACCGTAGCGTTCCGGC
                      ____________________________________________________________
consensus             AACCAGTGGGAAGAACACTGTCCTCATTCTCCATTCCAACGGTGACCGTAGCGTTCCGGC
 
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JMSF046J08+           ACCGGCTCCGGCTCCGGCGGGTTCTGCTAATCCAGTACACGGACCTCCGAGGAACTTTCA
                      ____________________________________________________________
consensus             ACCGGCTCCGGCTCCGGCGGGTTCTGCTAATCCAGTACACGGACCTCCGAGGAACTTTCA
 
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JMSF046J08+           TCGGAAATCCAGCTGCTATCAGTCTCAGGGCGACAAAACTGCTGGGATTGCCAAACCTGA
                      ____________________________________________________________
consensus             TCGGAAATCCAGCTGCTATCAGTCTCAGGGCGACAAAACTGCTGGGATTGCCAAACCTGA
 
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JMSF046J08+           AGCGCGGAACAACTGCTGCTGTCGGACGGATAGCGATGATTGGATTCGCCCACGACATTT
                      ____________________________________________________________
consensus             AGCGCGGAACAACTGCTGCTGTCGGACGGATAGCGATGATTGGATTCGCCCACGACATTT
 
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JMSF046J08+           GATTGTTGTATTATATTCTTGTCTCTAGCTATATCCTCAGCAAAATGTGGAGAACAAACC
                      ____________________________________________________________
consensus             GATTGTTGTATTATATTCTTGTCTCTAGCTATATCCTCAGCAAAATGTGGAGAACAAACC