Contig 012162:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS004B12Sequence569012162 (3)emb|CAN63464.1|8e-65hypothetical protein VITISV_009629 [Vitis vinifera]
JMFS052G10Sequence489012162 (3)ref|XP_009779221.1|132PREDICTED: uncharacterized protein LOC104228457 [Nicotiana sylvestris]
JMSF046I20Sequence693012162 (3)emb|CAN63464.1|4e-81hypothetical protein VITISV_009629 [Vitis vinifera]692018333

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF046I20+ TATGACAAGGAAAATGTTTTCCTTTTGGTGATGGGGCAG
                      ____________________________________________________________
consensus TATGACAAGGAAAATGTTTTCCTTTTGGTGATGGGGCAG
 
. : . : . : . : . : . :
JMFS004B12+ CAGCAGAAC
JMSF046I20+ GAGAACTAAAAGCAGAAGTGACGTTACTGACAGCTGTTGGAGCCTCAGCAGCAGCAGAAC
                      ____________________________________________________________
consensus GAGAACTAAAAGCAGAAGTGACGTTACTGACAGCTGTTGGAGCCTCAGCAGCAGCAGAAC
 
. : . : . : . : . : . :
JMFS004B12+ GGTTGCGCCAAAGTTGCCAAAAGCGCACGTCATCATCATAAAAGCTGACCTGCTTAACAC
JMSF046I20+ GGTTGCGCCAAAGTTGCCAAAAGCGCACGTCATCATCATAAAAGCTGACCTGCTTAACAC
                      ____________________________________________________________
consensus GGTTGCGCCAAAGTTGCCAAAAGCGCACGTCATCATCATAAAAGCTGACCTGCTTAACAC
 
. : . : . : . : . : . :
JMFS004B12+ TCCCACCTCGTATGGCTTCTGTTGGTTTCCCTCTAGACTCTGATTCACCCTCGGCAAGCT
JMFS052G10+ TGGCTTCTGTTGGTTTCCCTCTAGACTCTGATTCACCCTCGGCAAGCT
JMSF046I20+ TCCCACCTCGTATGGCTTCTGTTGGTTTCCCTCTAGACTCTGATTCACCCTCGGCAAGCT
                      ____________________________________________________________
consensus TCCCACCTCGTATGGCTTCTGTTGGTTTCCCTCTAGACTCTGATTCACCCTCGGCAAGCT
 
. : . : . : . : . : . :
JMFS004B12+ TTTCGAGCTTTG-CCCCGACCAAACGCCTCTCATCAACACCACCAGCCTTCAGCTCATAA
JMFS052G10+ TTTCGAGCTTTGTCCCCGACCAAACGCCTCTCATCATCTCCACCAGCCTTTAGCTCATAA
JMSF046I20+ TTTCGAGCTTTG-CCCCGACCAAACGCCTCTCATCAACACCACCAGCCTTCAGCTCATAA
                      ____________________________________________________________
consensus TTTCGAGCTTTG-CCCCGACCAAACGCCTCTCATCAACACCACCAGCCTTCAGCTCATAA
 
. : . : . : . : . : . :
JMFS004B12+ ATGACCTGGCGGTGCTCCCAATTCCAAACGGAAACGTGATCCGATGCATCCGCAGTCACG
JMFS052G10+ ATGACCTGGCGGTGCTCCCAATTCCAAACGGAAACGTGATCCGATGCATCCGCAGTCTCG
JMSF046I20+ ATGACCTGGCGGTGCTCCCAATTCCAAACGGAAACGTGATCCGATGCATCCGCAGTCACG
                      ____________________________________________________________
consensus ATGACCTGGCGGTGCTCCCAATTCCAAACGGAAACGTGATCCGATGCATCCGCAGTCACG
 
. : . : . : . : . : . :
JMFS004B12+ ATCCACGGATGCGTCGGGTGCATATGAATCTTCACTATCTTATCATTTGTCGGCCGGAAA
JMFS052G10+ ATCCACGGATGCGTCGGGTGCATATGAATCTTCACTATCTTATCATTTGTTGGCCGGAAA
JMSF046I20+ ATCCACGGATGCGTCGGGTGCATATGAATCTTCACTATCTTATCATTTGTCGGCCGGAAA
                      ____________________________________________________________
consensus ATCCACGGATGCGTCGGGTGCATATGAATCTTCACTATCTTATCATTTGTCGGCCGGAAA
 
. : . : . : . : . : . :
JMFS004B12+ GCCCTTAACCGCAGCATTTTTCAACTTTCAACTTTCCAGAAGTGCAATTGAAGAGCC-AC
JMFS052G10+ GCCCTTAACCGCAACATTTTTCAACTTTCAACTTTCCAGAAGTGCAATTGAAGAGCCTTC
JMSF046I20+ GCCCTTAACCGCAGCATTTTTCAACTTTCAACTTTCCAGAAGTGCAATTGAAGAGCC-AC
                      ____________________________________________________________
consensus GCCCTTAACCGCAGCATTTTTCAACTTTCAACTTTCCAGAAGTGCAATTGAAGAGCC-AC
 
. : . : . : . : . : . :
JMFS004B12+ TCGGCGATGGATCTGACGATGAAATACGAATTTGTATACTTAA-ATGTAACCTCTACTCT
JMFS052G10+ TCGGCGATGGATCTGACGATGAAATACGAATTTGTATACTTAATATGTAACCTCTACTCT
JMSF046I20+ TCGGCGATGGATCTGACGATGAAATACGAATTTGTATACTTAA-ATGTAACCTCTACTCT
                      ____________________________________________________________
consensus TCGGCGATGGATCTGACGATGAAATACGAATTTGTATACTTAA-ATGTAACCTCTACTCT
 
. : . : . : . : . : . :
JMFS004B12+ AAAATGTCAGTAACATTCAGTGAAGAATCTGATCGTGCTACCGATA---AGAAACATCAA
JMFS052G10+ AATATGTCAGTAAGATTCAGTGAAGAATCTGATCGTGCTACCGATATAGAAACACTCTAA
JMSF046I20+ AAAATGTCAGTAAGATTCAGTGAAGAATCTGATCGTGCTACCGATA---AGAAACATCAA
                      ____________________________________________________________
consensus AAAATGTCAGTAAGATTCAGTGAAGAATCTGATCGTGCTACCGATA---AGAAACATCAA
 
. : . : . : . : . : . :
JMFS004B12+ AATTTTCCGACCATTCCAATCAAACACCTTACGCCAGCTGGGAGTTGAAGAATGAGGAAC
JMFS052G10+ ATTTTCTGTTCCATTCCAATCAAACACCTTACGCCATCTGGGAGTTGAAGAATGAGGAAC
JMSF046I20+ AATTTTCCGACCATTCCAATCAAACACCTTACGCCAGCTGGGAGTTGAAGAATGAGGAAC
                      ____________________________________________________________
consensus AATTTTCCGACCATTCCAATCAAACACCTTACGCCAGCTGGGAGTTGAAGAATGAGGAAC
 
. : . : . : . : . : . :
JMFS004B12+ TGGTCACTGTAAAGTGTAAGA
JMFS052G10+ TGGTCACTGTAAAGTGTAAGA
JMSF046I20+ TGGTCACTGTAAAGTGTAAGAATTAAGAAATGGCAAGCACTTTGAACAAGACGAGTTACC
                      ____________________________________________________________
consensus TGGTCACTGTAAAGTGTAAGAATTAAGAAATGGCAAGCACTTTGAACAAGACGAGTTACC