| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF029I04 | Sequence | 649 | 012161 (3) | ref|XP_009590109.1| | 1e-71 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [ | 728 | 008559 (3) | ref|XP_011080725.1| | 3e-64 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 i |
| JMSF029J04 | Sequence | 663 | 012161 (3) | ref|XP_009590109.1| | 2e-72 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [ | 735 | 008559 (3) | ref|XP_011080725.1| | 2e-66 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 i |
| JMSF046I07 | Sequence | 744 | 012161 (3) | ref|XP_009590109.1| | 1e-82 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [ | 789 | 008559 (3) | ref|XP_011080725.1| | 3e-62 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 i |
This contig is upended
. : . : . : . : . : . :
JMSF046I07+ TGCAATATGAAGCTGCTGCAGGCT
____________________________________________________________
consensus TGCAATATGAAGCTGCTGCAGGCT
. : . : . : . : . : . :
JMSF029J04+ AAGAAT
JMSF046I07+ TCTCAATGCACCGAGGTTGGAAGGTATAATTGTTAATTGGTTCTCGTTCAAAGAAAGAAT
____________________________________________________________
consensus TCTCAATGCACCGAGGTTGGAAGGTATAATTGTTAATTGGTTCTCGTTCAAAGAAAGAAT
. : . : . : . : . : . :
JMSF029I04+ GTTTCAGAGACGCTATCCCTTCCCAGCTAAGAGATTTATCCTCAATGCCATT
JMSF029J04+ TTCCAAATGTTTCAGAGACGCTATCCCTTCCCAGCTAAGAGATTTATCCTCAATGCCATT
JMSF046I07+ TTCCAAATGTTTCAGAGACGCTATCCCTTCCCAGCTAAGAGATTTATCCTCAATGCCATT
____________________________________________________________
consensus TTCCAAATGTTTCAGAGACGCTATCCCTTCCCAGCTAAGAGATTTATCCTCAATGCCATT
. : . : . : . : . : . :
JMSF029I04+ CGCATTAAGGAACAGTTTCGTAAGAGAATCCAAACGACTAATTTTAGCCGGAACATCTTT
JMSF029J04+ CGCATTAAGGAACAGTTTCGTAAGAGAATCCAAACGACTAATTTTAGCCGGAACATCTTT
JMSF046I07+ CGCATTAAGGAACAGTTTCGTAAGAGAATCCAAACGACTAATTTTAGCCGGAACATCTTT
____________________________________________________________
consensus CGCATTAAGGAACAGTTTCGTAAGAGAATCCAAACGACTAATTTTAGCCGGAACATCTTT
. : . : . : . : . : . :
JMSF029I04+ CACTGAGTTGTTATTCAAATCAAGAAGTCTAGCATAATGTCCACAGTTCCATATTTCATC
JMSF029J04+ CACTGAGTTGTTATTCAAATCAAGAAGTCTAGCATAATGTCCACAGTTCCATATTTCATC
JMSF046I07+ CACTGAGTTGTTATTCAAATCAAGAAGTCTAGCATAATGTCCACAGTTCCATATTTCATC
____________________________________________________________
consensus CACTGAGTTGTTATTCAAATCAAGAAGTCTAGCATAATGTCCACAGTTCCATATTTCATC
. : . : . : . : . : . :
JMSF029I04+ AGGAATGGCCTTCAGACCGCTATCAGATAATCCTAATACCCCAGTAACCTGCCACCGTCG
JMSF029J04+ AGGAATGGCCTTCAGACCGCTATCAGATAATCCTAATACCCCAGTAACCTGCCACCGTCG
JMSF046I07+ AGGAATGGCCTTCAGACCGCTATCAGATAATCCTAATACCCCAGTAACCTGCCACCGTCG
____________________________________________________________
consensus AGGAATGGCCTTCAGACCGCTATCAGATAATCCTAATACCCCAGTAACCTGCCACCGTCG
. : . : . : . : . : . :
JMSF029I04+ TTCATGGTCACTCCTTTTAACATAAACCTGAGACTTTTCCATTTTTGGCCTATGAGATTC
JMSF029J04+ TTCATGGTCACTCCTTTTAACATAAACCTGAGACTTTTCCATTTTTGGCCTATGAGATTC
JMSF046I07+ TTCATGGTCACTCCTTTTAACATAAACCTGAGACTTTTCCATTTTTGGCCTATGAGATTC
____________________________________________________________
consensus TTCATGGTCACTCCTTTTAACATAAACCTGAGACTTTTCCATTTTTGGCCTATGAGATTC
. : . : . : . : . : . :
JMSF029I04+ ATGTGGCCTTCTCACAGTTGACAATGGTGAAGCTTCTTTTGTAATTGGCCCATCCCCTTG
JMSF029J04+ ATGTGGCCTTCTCACAGTTGACAATGGTGAAGCTTCTTTTGTAATTGGCCCATCCCCTTG
JMSF046I07+ ATGTGGCCTTCTCACAGTTGACAATGGTGAAGCTTCTTTTGTAATTGGCCCATCCCCTTG
____________________________________________________________
consensus ATGTGGCCTTCTCACAGTTGACAATGGTGAAGCTTCTTTTGTAATTGGCCCATCCCCTTG
. : . : . : . : . : . :
JMSF029I04+ GTGTAGACCTTGGGAGCCCATGAGCATGATTTTGGAGCCATTAACAATGCCCGAGGACCT
JMSF029J04+ GTGTAGACCTTGGGAGCCCATGAGCATGATTTTGGAGCCATTAACAATGCCCGAGGACCT
JMSF046I07+ GTGTAGACCTTGGGAGCCCATGAGCATGATTTTGGAGCCATTAACAATGCCCGAGGACCT
____________________________________________________________
consensus GTGTAGACCTTGGGAGCCCATGAGCATGATTTTGGAGCCATTAACAATGCCCGAGGACCT
. : . : . : . : . : . :
JMSF029I04+ CAGTGTCATTTCATCACCAATAACTTTCCCTTTAGAGATGATTTTTTGGCCGCGAGGGAG
JMSF029J04+ CAGTGTCATTTCATCACCAATAACTTTCCCTTTAGAGATGATTTTTTGGCCGCGAGGGAG
JMSF046I07+ CAGTGTCATTTCATCACCAATAACTTTCCCTTTAGAGATGATTTTTTGGCCGCGAGGGAG
____________________________________________________________
consensus CAGTGTCATTTCATCACCAATAACTTTCCCTTTAGAGATGATTTTTTGGCCGCGAGGGAG
. : . : . : . : . : . :
JMSF029I04+ GACATTGGTGAGCGGCTGGAGTAGAGACTTAAGTTCGTTGACCGTCGCGTCGGCGGAGAC
JMSF029J04+ GACATTGGTGAGCGGCTGGAGTAGAGACTTAAGTTCGTTGACCGTCGCGTCGGCGGAGAC
JMSF046I07+ GACATTGGTGAGCGGCTGGAGTAGAGACTTAAGTTCGTTGACCGTCGCGTCGGCGGAGAC
____________________________________________________________
consensus GACATTGGTGAGCGGCTGGAGTAGAGACTTAAGTTCGTTGACCGTCGCGTCGGCGGAGAC
. : . : . : . : . : . :
JMSF029I04+ TTCCACCGGAATATTCCTTCCGGCGAATTTCACATTCACAATAATCGCAGACGGCTTCTG
JMSF029J04+ TTCCACCGGAATATTCCTTCCGGCGAATTTCACATTCACAATAATCGCAGACGGCTTCTG
JMSF046I07+ TTCAACCGGAATATTCCTTCCGGCGAATTTCACATTCACAATAATCGCAGACGGCTTCTG
____________________________________________________________
consensus TTCCACCGGAATATTCCTTCCGGCGAATTTCACATTCACAATAATCGCAGACGGCTTCTG
. : . : . : . : . : . :
JMSF029I04+ AGGATTGCTGCCTCTTCCTTCCTCCATTTTCGCCTATCTGCTTACTTCTCCACGAC
JMSF029J04+ AGGATTGCTGCCTCTTCCTTCCTCCATTTTCGCCTATCTGCTTACTTCTCCACGAC
JMSF046I07+ AGGATTGCTGCCTCTTCCTTCCTCCATTTTCGCCTATCTGCTTACTTCTCCACGACAGTC
____________________________________________________________
consensus AGGATTGCTGCCTCTTCCTTCCTCCATTTTCGCCTATCTGCTTACTTCTCCACGACAGTC