Contig 012157:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007K11Sequence641012157 (5)ref|XP_009779935.1|8e-34PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nicotiana sylv767011416 (3)ref|XP_010315626.1|1e-114PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial isoform X2 [Sol
JMFF027D09Sequence557012157 (5)ref|XP_009779935.1|2e-19PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nicotiana sylv754011416 (3)ref|XP_010315626.1|9e-115PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial isoform X2 [Sol
JMFS001H05Sequence620012157 (5)ref|XP_009779935.1|6e-31PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nicotiana sylv
JMFS130E02Sequence623012157 (5)ref|XP_010315627.1|7e-23PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial isoform X3 [Sol
JMSF046A07Sequence681012157 (5)ref|XP_009779935.1|7e-39PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nicotiana sylv699011416 (3)ref|XP_006360317.1|4e-66PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial-like [Solanum t

Alignment

This contig is upended


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JMFS130E02+             TTTGAGAACTGATGATAAAGTTAAGGATCAATTATAGTTGATCAAAAACATAAAAATT
                      ____________________________________________________________
consensus               TTTGAGAACTGATGATAAAGTTAAGGATCAATTATAGTTGATCAAAAACATAAAAATT
 
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JMFS130E02+           AAAAAGAATATTTTAAAAATGACACGTGTCATGCTTGGGAAGAATTAACCTACTATACTC
                      ____________________________________________________________
consensus             AAAAAGAATATTTTAAAAATGACACGTGTCATGCTTGGGAAGAATTAACCTACTATACTC
 
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JMFS130E02+           GTCAATTTGGACTCAATTGAACAATTTTACAGGTTTAGGGGATCTGAATGGAGCTTTTTT
                      ____________________________________________________________
consensus             GTCAATTTGGACTCAATTGAACAATTTTACAGGTTTAGGGGATCTGAATGGAGCTTTTTT
 
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JMFS130E02+           TACTTAGGAACCTAATTGCAATATCCGAATGACTTAGGAGGCCAATTTGACCCTTTTTCC
                      ____________________________________________________________
consensus             TACTTAGGAACCTAATTGCAATATCCGAATGACTTAGGAGGCCAATTTGACCCTTTTTCC
 
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JMFS130E02+           AAAATTTAAATCAACTTTCCCCAAGTAGCCTCTTAATCAATCCAAGACTCTAAGTGCAAT
                      ____________________________________________________________
consensus             AAAATTTAAATCAACTTTCCCCAAGTAGCCTCTTAATCAATCCAAGACTCTAAGTGCAAT
 
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JMFS130E02+           AATATTAAAATGCAATAAGATAACAATCCTGATTATAGGCTTTATGCTGCATGACACCAT
                      ____________________________________________________________
consensus             AATATTAAAATGCAATAAGATAACAATCCTGATTATAGGCTTTATGCTGCATGACACCAT
 
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JMFS130E02+           TTCTCCGCAAGGTTTCCCCAGAAATCATTCGCTGGGAAAAGTATGTAAGTAGCTCACTAC
                      ____________________________________________________________
consensus             TTCTCCGCAAGGTTTCCCCAGAAATCATTCGCTGGGAAAAGTATGTAAGTAGCTCACTAC
 
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JMFS130E02+           TTAGAGGTTCCAATCTCAAACTGTGCTCATCTAACTGTCTGTATTTCTTATTTGATTTCA
                      ____________________________________________________________
consensus             TTAGAGGTTCCAATCTCAAACTGTGCTCATCTAACTGTCTGTATTTCTTATTTGATTTCA
 
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JMFS130E02+           AGCTCTTCTTCATATCTCCATTTGTTGACTTCGTATCTCCCAATGCCTGTGCGCTGCCTC
JMSF046A07+                                                  CCAATGCCTGTGCGCTGCCTC
                      ____________________________________________________________
consensus             AGCTCTTCTTCATATCTCCATTTGTTGACTTCGTATCTCCCAATGCCTGTGCGCTGCCTC
 
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JMFS130E02+           TCCAGCCACATTTACCTCGAAAGCAGGTCCATAAAGCTGTATCCCCTTTATGATCAATAT
JMFF007K11+                              AAAGCAGGTCCATAAAGCTGTATCCCCTTTATGATCAATAT
JMFS001H05+                              AAAGCAGGTCCATANAGCTGTATCCCCTTATGNATCAATAT
JMSF046A07+           TCCAGCCACATTTACCTCGAAAGCAGGTCCATAAAGCTGTATCCCCTTTATGATCAATAT
                      ____________________________________________________________
consensus             TCCAGCCACATTTACCTCGAAAGCAGGTCCATAAAGCTGTATCCCCTTTATGATCAATAT
 
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JMFS130E02+           AAAGAGATAAGCTCCTCTCATTATT                                   
JMFF007K11+           AAAGAGATAAGCTCCTCTCATTATTGTCCCCGCCTTTGCACATTGGACAATGCAATCCAG
JMFS001H05+           AAAGAGATAAGCTCCTCTCATTATTGTCNCCGCCTNTGCACATTGGACAATGCAATCCAG
JMFF027D09+                                                     TTGGACAATGCAATCCAG
JMSF046A07+           AAAGAGATAAGCTCCTCTCATTATTGTCCCCGCCTTTGCACATTGGACAATGCAATCCAG
                      ____________________________________________________________
consensus             AAAGAGATAAGCTCCTCTCATTATTGTCCCCGCCTTTGCACATTGGACAATGCAATCCAG
 
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JMFF007K11+           AGTATTGGCCAGGGGCACACGAACCACTATCTATACCGGCCTCCTTAAGTTTCTGGTTCA
JMFS001H05+           AGTATTGGCCAGGGGCACACGAACCACTATCTATACCGGCCTCCTTAAGTTTCTGGTTCA
JMFF027D09+           AGTATTGGCCAGGGGCACACGAACCACTATCTATACCGGCCTCCTTAAGTTTCTGGTTCA
JMSF046A07+           AGTATTGGCCAGGGGCACACGAACCACTATCTATACCGGCCTCCTTAAGTTTCTGGTTCA
                      ____________________________________________________________
consensus             AGTATTGGCCAGGGGCACACGAACCACTATCTATACCGGCCTCCTTAAGTTTCTGGTTCA
 
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JMFF007K11+           ACAAGTTCAATCGCGAGGATTTCGCCTCGGGGCCATCTTCCAGGGAAACTGGCGGGGGAA
JMFS001H05+           ACAAGTTCAATCGCGAGGATTTCGCCTCGGGGCCATCTTCCAGGGAAACTGGCGGGGGAA
JMFF027D09+           ACAAGTTCAATCGCGAGGATTTCGCCTCGGGGCCATCTTCCAGGGAAACTGGCGGGGGAA
JMSF046A07+           ACAAGTTCAATCGCGAGGATTTCGCCTCGGGGCCATCTTCCAGGGAAACTGGCGGGGGAA
                      ____________________________________________________________
consensus             ACAAGTTCAATCGCGAGGATTTCGCCTCGGGGCCATCTTCCAGGGAAACTGGCGGGGGAA
 
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JMFF007K11+           CGGGATGGGCCCTGTAGGACAAACGGGAGGCCTGACGAGCGGGGGAGACGGGTTTGGAAG
JMFS001H05+           CGGGATGGGCCCTGTAGGACAAACGGGAGGCCTGACGAGCGGGGGAGACGGGTTTGGAAG
JMFF027D09+           CGGGATGGGCCCTGTAGGACAAACGGGAGGCCTGACGAGCGGGGGAGACGGGTTTGGAAG
JMSF046A07+           CGGGATGGGCCCTGTAGGACAAACGGGAGGCCTGACGAGCGGGGGAGACGGGTTTGGAAG
                      ____________________________________________________________
consensus             CGGGATGGGCCCTGTAGGACAAACGGGAGGCCTGACGAGCGGGGGAGACGGGTTTGGAAG
 
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JMFF007K11+           CAAATGCAGTAAATATGAGGCCGTGGCCGTGAGTGTGGATGAGACGGGAAGGAACTGAGG
JMFS001H05+           CAAATGCAGTAAATATGAGGCCGTGGCCGTGAGTGTGGATGAGACGGGAAGGAACTGAGG
JMFF027D09+           CAAATGCAGTAAATATGAGGCCGTGGCCGTGAGTGTGGATGAGACGGGAAGGAACTGAGG
JMSF046A07+           CAAATGCAGTAAATATGAGGCCGTGGCCGTGAGTGTGGATGAGACGGGAAGGAACTGAGG
                      ____________________________________________________________
consensus             CAAATGCAGTAAATATGAGGCCGTGGCCGTGAGTGTGGATGAGACGGGAAGGAACTGAGG
 
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JMFF007K11+           GCGTTATGGAATTCAAAACCGGTTTCGGTGCGACTATGAAGGAGGACTTCAAGGAAGTGT
JMFS001H05+           GCGTTATGGAATTCAAAACCGGTTTCGGCGCGACTATGAAGGAGGACTTCAAGGAAGTGT
JMFF027D09+           GCGTTATGGAATTCAAAACCGGTTTCGGTGCGACTATGAAGGAGGACTTCAAGGAAGTGT
JMSF046A07+           GCGTTATGGAATTCAAAACCGGTTTCGGCGCGACTATGAAGGAGGACTTCAAGGAAGTGT
                      ____________________________________________________________
consensus             GCGTTATGGAATTCAAAACCGGTTTCGGTGCGACTATGAAGGAGGACTTCAAGGAAGTGT
 
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JMFF007K11+           GCACCAGATGCTTGGAAGACGCCATTATCACCAGAAGATTGTTCAACTTACAGCTACAGC
JMFS001H05+           GCACCAGATGCTTGGAAGACGCCATTATCACCAGAAGATTGTTCAACTTACAGCTACAGC
JMFF027D09+           GCACCAGATGCTTGGAAGACGCCATTATCACCAGAAGATTGTTCAACTTACAGCTACAGC
JMSF046A07+           GCACCAGATGCTTGGAAGACGCCATTATCACCAGAAGATTGTTCAACTTACAGCTACAGC
                      ____________________________________________________________
consensus             GCACCAGATGCTTGGAAGACGCCATTATCACCAGAAGATTGTTCAACTTACAGCTACAGC
 
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JMFF007K11+           TACTGAAACTGTACGAGAAGAGTCCTCCGCGAGTTTGAAGGTGAAGCATAGCAGAAGCAA
JMFS001H05+           TACTGAAACTGTACGAGAAGAGTCCTCCGCGAGTTTGAAGGTGAAGCATAGCAGAAGCAA
JMFF027D09+           TACTGAAACTGTACGAGAAGAGTCCTCCGCGAGTTTGAAGGTGAAGCATAGCAGAAGCAA
JMSF046A07+           TACTGAAACTGTACGAGAAGAGTCCTCCGCGAGTTTGAAGGTGAAGCATAGCAGAAGCAA
                      ____________________________________________________________
consensus             TACTGAAACTGTACGAGAAGAGTCCTCCGCGAGTTTGAAGGTGAAGCATAGCAGAAGCAA
 
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JMFF007K11+           CACGCTATTCCTCTTCTTTTTAGCTTTCAGGAAGCAGAAGCAGAAAGGAAACGGGCGGCT
JMFS001H05+           CACGCTATTCCTCTTCTTTTTAGCTTTCAGGAAGCAGAAGCAGAAAGGAAATGGGCGGCT
JMFF027D09+           CACGCTATTCCTCTTCTTTTTAGCTTTCAGGAAGCAGAAGCAGAAAGGAAACGGGCGGCT
JMSF046A07+           CACGCTATTCCTCTTCTTTTTAGCTTTCAGGAAGCAGAAGCAGAAAGGAAATGGGCGGCT
                      ____________________________________________________________
consensus             CACGCTATTCCTCTTCTTTTTAGCTTTCAGGAAGCAGAAGCAGAAAGGAAATGGGCGGCT
 
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JMFF007K11+           GCGAATATGAGATTGCTCATCTCCTTATTTGGTACTGATAGACTTCATTCATTCAACAT 
JMFS001H05+           GCGAATATGAGATTGCTCATCTCCTTATTTGGTACTGAT                     
JMFF027D09+           GCGAATATGAGATTGCTCATCTCCTTATTTGGTACTGATAGACTTCATTCATTCAACAT 
JMSF046A07+           GCGAATATGAGATTGCTCATCTCCTTATTTGGTACTGATAGACTTCATTCATTCAACATC
                      ____________________________________________________________
consensus             GCGAATATGAGATTGCTCATCTCCTTATTTGGTACTGATAGACTTCATTCATTCAACATC