Contig 012153:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027I18Sequence626012153 (3)ref|XP_004238963.1|2e-85PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990 729010081 (3)ref|XP_004238963.1|1e-55PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990
JMSF037L12Sequence702012153 (3)ref|XP_004238963.1|3e-116PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990 729010081 (3)ref|XP_004238963.1|6e-57PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990
JMSF045F04Sequence718012153 (3)ref|XP_004238963.1|2e-96PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990 764010081 (3)ref|XP_004238963.1|2e-54PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990

Alignment

This contig is upended


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JMSF037L12+                                                                GAATTCA
                      ____________________________________________________________
consensus                                                                  GAATTCA
 
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JMSF037L12+           GCATCCGATTGCCAGGACCTGCCGAACCGATCCGTATCGTTGCTGAATCCGGGTCCCCAC
                      ____________________________________________________________
consensus             GCATCCGATTGCCAGGACCTGCCGAACCGATCCGTATCGTTGCTGAATCCGGGTCCCCAC
 
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JMSF037L12+           TGTTCGGACCCGCTCGAAAACCTACCATAATTCACCAATATAGATGTGTTCAACGAGGAC
JMSF045F04+                   CCCGCTCGAAAACCTACCATAATTCACCAATATAGATGTGTTCAACGAGGAC
                      ____________________________________________________________
consensus             TGTTCGGACCCGCTCGAAAACCTACCATAATTCACCAATATAGATGTGTTCAACGAGGAC
 
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JMSF037L12+           CGAATTGTACTATCGTTGACTAAATACGACTCTGGATCGACTTGAGTCAGCTCAAGCGAC
JMSF027I18+                                           TGGATCGACTTGAGTCAGCTCAAGCGAC
JMSF045F04+           CGAATTGTACTATCGTTGACTAAATACGACTCTGGATCGACTTGAGTCAGCTCAAGCGAC
                      ____________________________________________________________
consensus             CGAATTGTACTATCGTTGACTAAATACGACTCTGGATCGACTTGAGTCAGCTCAAGCGAC
 
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JMSF037L12+           GCAATGACCGGAGAATCAGTGGCAATACTGTAAAAACAGATGTCGGCCTCCGAATCGGCG
JMSF027I18+           GCAATGACCGGAGAATCAGTGGCAATACTGTAAAAACAGATGTCGGCCTCCGAATCGGCG
JMSF045F04+           GCAATGACCGGAGAATCAGTGGCAATACTGTAAAAACAGATGTCGGCCTCCGAATCGGCG
                      ____________________________________________________________
consensus             GCAATGACCGGAGAATCAGTGGCAATACTGTAAAAACAGATGTCGGCCTCCGAATCGGCG
 
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JMSF037L12+           ACGGTGAAGAACAGATCCGAGTAGGCTCCGGACCTGGAAATGGACTCCGTCCACGGCGAA
JMSF027I18+           ACGGTGAAGAACAGATCCGAGTAGGCTCCGGACCTGGAAATGGACTCCGTCCACGGCGAA
JMSF045F04+           ACGGTGAAGAACAGATCCGAGTAGGCTCCGGACCTGGAAATGGACTCCGTCCACGGCGAA
                      ____________________________________________________________
consensus             ACGGTGAAGAACAGATCCGAGTAGGCTCCGGACCTGGAAATGGACTCCGTCCACGGCGAA
 
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JMSF037L12+           CGCCACGAAAAGACCAAATTACCCTCGACAGAAACATCAAAGGACGGGGACTGTGACTTC
JMSF027I18+           CGCCACGAAAAGACCAAATTACCCTCGACAGAAACATCAAAGGACGGGGACTGTGACTTC
JMSF045F04+           CGCCACGAAAAGACCAAATTACCCTCGACAGAAACATCAAAGGACGGGGACTGTGACTTC
                      ____________________________________________________________
consensus             CGCCACGAAAAGACCAAATTACCCTCGACAGAAACATCAAAGGACGGGGACTGTGACTTC
 
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JMSF037L12+           CCGTCGAAGTTATCGTACACAGTAAAGGTGCGGAGGAGGTACTTCCCAGCGGGAAGGTCA
JMSF027I18+           CCGTCGAAGTTATCGTACACAGTAAAGGTGCGGAGGAGGTACTTCCCAGCGGGAAGGTCA
JMSF045F04+           CCGTCGAAGTTATCGTACACAGTAAAGGTGCGGAGGAGGTACTTCCCAGCGGGAAGGTCA
                      ____________________________________________________________
consensus             CCGTCGAAGTTATCGTACACAGTAAAGGTGCGGAGGAGGTACTTCCCAGCGGGAAGGTCA
 
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JMSF037L12+           GGGATAACGTAGCAATTCTTCTTACCGGAGGCGATTGGGAAGAAGCGGAGAGTCTTCTCC
JMSF027I18+           GGGATAACGTAGCAATTCTTCTTACCGGAGGCGATTGGGAAGAAGCGGAGAGTCTTCTCC
JMSF045F04+           GGGATAACGTAGCAATTCTTCTTACCGGAGGCGATTGGGAAGAAGCGGAGAGTCTTCTCC
                      ____________________________________________________________
consensus             GGGATAACGTAGCAATTCTTCTTACCGGAGGCGATTGGGAAGAAGCGGAGAGTCTTCTCC
 
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JMSF037L12+           TGCTGGTGCTTAAACTGAAGCGGCTCCGACACAATGGCGGTGTCACCGCCGGTGTAGTAG
JMSF027I18+           TGCTGGTGCTTAAACTGAAGCGGCTCCGACACAATGGCGGTGTCACCGCCGGTGTAGTAG
JMSF045F04+           TGCTGGTGCTTAAACTGAAGCGGCTCCGACACAATGGCGGTGTCACCGCCGGTGTAGTAG
                      ____________________________________________________________
consensus             TGCTGGTGCTTAAACTGAAGCGGCTCCGACACAATGGCGGTGTCACCGCCGGTGTAGTAG
 
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JMSF037L12+           CGGTCTGCGAGCCACGCCGTGTTGAAGACATCCGTGGAGTTAGTATGACCACCGCAATCT
JMSF027I18+           CGGTCTGCGAGCCACGCCGTGTTGAAGACATCCGTGGAGTTAGTATGACCACCGCAATCT
JMSF045F04+           CGGTCTGCGAGCCACGCCGTGTTGAAGACATCCGTGGAGTTAGTATGACCACCGCAATCT
                      ____________________________________________________________
consensus             CGGTCTGCGAGCCACGCCGTGTTGAAGACATCCGTGGAGTTAGTATGACCACCGCAATCT
 
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JMSF037L12+           ATGTGCAAATTGTAAGTGAAAGGGTAGGGCAGAGAATCTGCAGAAAAAGAAAAGAGAGAG
JMSF027I18+           ATGTGCAAATTGTAAGTGAAAGGGTAGGGCAGAGAATCTGCAGAAAAAGAAAAGAGAGAG
JMSF045F04+           ATGTGCAAATTGTAAGTGAAAGGGTAGGGCAGAGAATCTGCAGAAAAAGAAAAGAGAGAG
                      ____________________________________________________________
consensus             ATGTGCAAATTGTAAGTGAAAGGGTAGGGCAGAGAATCTGCAGAAAAAGAAAAGAGAGAG
 
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JMSF037L12+           AAGAGAGAAAGGATTAGAAGAGGAGACATGGTAT                          
JMSF027I18+           AAGAGAGAAAGGATTAGAAGAGGAGACATGGTATGGGAGTAGAGTATTGTCACTGTTGGT
JMSF045F04+           AAGAGAGAAAGGATTAGAAGAGGAGACATGGTATGGGAGTAGAGTATTGTCACTGTTGGT
                      ____________________________________________________________
consensus             AAGAGAGAAAGGATTAGAAGAGGAGACATGGTATGGGAGTAGAGTATTGTCACTGTTGGT
 
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JMSF027I18+           TGTTTGGACACATAAGAAGGAAAAAAGCTCCGCCGGTCGCGGCGGGGTAGGTGGCG    
JMSF045F04+           TGTTTGGACACATAAGAAGGAAAAAAGCTCCGCCGGTCGCGGCGGGGTAGGTGGCGCGCC
                      ____________________________________________________________
consensus             TGTTTGGACACATAAGAAGGAAAAAAGCTCCGCCGGTCGCGGCGGGGTAGGTGGCGCGCC