Contig 012150:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001F04Sequence353012150 (3)ref|XP_011073845.1|5e-37PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chrom731011229 (2)ref|XP_009630710.1|7e-72PREDICTED: putative SMARCAL1-like protein [Nicotiana tomentosiformis]
JMSF044G12Sequence697012150 (3)gb|KHN17794.1|2e-37SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfam
JMSF049L07Sequence687012150 (3)ref|XP_006349876.1|5e-99PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chrom

Alignment

This contig is upended


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JMSF001F04+                                                        TTTTTGTGGAGTTGG
                      ____________________________________________________________
consensus                                                          TTTTTGTGGAGTTGG
 
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JMSF001F04+           GTGGGGCTTACCTGTAATATAGGAAGTGATGCATTGGTTCGTTTAGCCTGGGCATTCTTC
                      ____________________________________________________________
consensus             GTGGGGCTTACCTGTAATATAGGAAGTGATGCATTGGTTCGTTTAGCCTGGGCATTCTTC
 
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JMSF001F04+           AAAAAGTGTGATTCATCGGCAATAACAACCTTGAACTCTGATGCCATTAAGGTATCCTGT
                      ____________________________________________________________
consensus             AAAAAGTGTGATTCATCGGCAATAACAACCTTGAACTCTGATGCCATTAAGGTATCCTGT
 
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JMSF001F04+           AACTTAGGAACAGTGTCATAGGATATTATATTAAAGATGCCATCAAGTTGGATAGATCTC
                      ____________________________________________________________
consensus             AACTTAGGAACAGTGTCATAGGATATTATATTAAAGATGCCATCAAGTTGGATAGATCTC
 
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JMSF001F04+           TTAGCATTTGAAGGCACAATTTTGAATCCTGCCCTATTTGAACCACTCAATTGAGATAAA
JMSF049L07+                     AAGGCACAATTTTGAATCCTGCCCTATTTGAACCACTCAATTGAGATAAA
                      ____________________________________________________________
consensus             TTAGCATTTGAAGGCACAATTTTGAATCCTGCCCTATTTGAACCACTCAATTGAGATAAA
 
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JMSF001F04+           ACCAC                                                       
JMSF049L07+           ACCACAAGGATATCTGAAGGTGAAATATCCAACCACTGTTGAATCATAGAAGCCCAATGA
                      ____________________________________________________________
consensus             ACCACAAGGATATCTGAAGGTGAAATATCCAACCACTGTTGAATCATAGAAGCCCAATGA
 
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JMSF049L07+           AGACGCAACGAAGATGGAGTAAGAACAAGAACGGGCCATGATTCACGGACGCAAGAACTT
                      ____________________________________________________________
consensus             AGACGCAACGAAGATGGAGTAAGAACAAGAACGGGCCATGATTCACGGACGCAAGAACTT
 
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JMSF049L07+           ACAGCAATGGCCTGAATTGTCTTTCCAAGTCCCATCTCGTCAGCTAAAAGAATCCGTGCA
                      ____________________________________________________________
consensus             ACAGCAATGGCCTGAATTGTCTTTCCAAGTCCCATCTCGTCAGCTAAAAGAATCCGTGCA
 
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JMSF049L07+           CCATGTTGCAAGGCGAATCTTACTCCATCACACTGAAAAGGCATTAGCTTCGTTTTAATG
JMSF044G12+                                  TCCATCACACTGAAAAGGCATTAGCTTCGTTTTAATG
                      ____________________________________________________________
consensus             CCATGTTGCAAGGCGAATCTTACTCCATCACACTGAAAAGGCATTAGCTTCGTTTTAATG
 
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JMSF049L07+           CTGTCAGGAATGGATTCATAGCGATCTTGAATATCACAAACTTCATTGGCAGCCACAATA
JMSF044G12+           CTGTCAGGAATGGATTCATAGCGATCTTGAATATCACAAACTTCATTGGCAGCCACAATA
                      ____________________________________________________________
consensus             CTGTCAGGAATGGATTCATAGCGATCTTGAATATCACAAACTTCATTGGCAGCCACAATA
 
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JMSF049L07+           GCACGTTGCACCAACGGATCTAAGTTCTGAACCTCCACATTTGAGCTAGAAATTCCATTT
JMSF044G12+           GCACGTTGCACCAACGGATCTAAGTTCTGAACCTCCACATTTGAGCTAGAAATTCCATTT
                      ____________________________________________________________
consensus             GCACGTTGCACCAACGGATCTAAGTTCTGAACCTCCACATTTGAGCTAGAAATTCCATTT
 
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JMSF049L07+           AGAA-TTTTTTCTGCTGATGACAATGATGACAGAGGAAACATCCACAATCTTTCTTTTGC
JMSF044G12+           AGAATTTTTTTCTGCTGATGACAATGATGACAGAGGAAACATCCACAATCTTTCTTTTGC
                      ____________________________________________________________
consensus             AGAATTTTTTTCTGCTGATGACAATGATGACAGAGGAAACATCCACAATCTTTCTTTTGC
 
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JMSF049L07+           ATTCCAAAACGCTTTAGGTACTTTTCGCAGTGCATCTATAAGTAGCTGGTCATACAAAAA
JMSF044G12+           ATTCCAAAACGCTTTAGGTACTTTTCGCAGTGCATCTATAAGTAGCTGGTCATACAAAAA
                      ____________________________________________________________
consensus             ATTCCAAAACGCTTTAGGTACTTTTCGCAGTGCATCTATAAGTAGCTGGTCATACAAAAA
 
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JMSF049L07+           CTTTGCAGCTATATCACCACTTGCATGGAGGAAAAGTTTAACAGAGCGTTTCTGTTGTTT
JMSF044G12+           CTTTGCAGCTATATCACCACTTGCATGGAGGAAAAGTTTAACAGAGCGTTTCTGTTGTTT
                      ____________________________________________________________
consensus             CTTTGCAGCTATATCACCACTTGCATGGAGGAAAAGTTTAACAGAGCGTTTCTGTTGTTT
 
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JMSF049L07+           TTGTTGTGGTTGTTGTTGTCTTGACAAATTCT                            
JMSF044G12+           TTGTTGTGGTTGTTGTTGTCTTGACAAATTCTCAGTTGCCTTATTTGCTCCAAATGAAGG
                      ____________________________________________________________
consensus             TTGTTGTGGTTGTTGTTGTCTTGACAAATTCTCAGTTGCCTTATTTGCTCCAAATGAAGG
 
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JMSF044G12+           CAGTATTCTCCGAGGAGGCGACTGAGCATTTTTCACAGAAGCAGAAGAGAGCTCCGGCCG
                      ____________________________________________________________
consensus             CAGTATTCTCCGAGGAGGCGACTGAGCATTTTTCACAGAAGCAGAAGAGAGCTCCGGCCG
 
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JMSF044G12+           GTGGGGAGAGACCGGAGTATGGTGCACAGAGGTGGTGGCAGCATAAGACGAGGAATTGCG
                      ____________________________________________________________
consensus             GTGGGGAGAGACCGGAGTATGGTGCACAGAGGTGGTGGCAGCATAAGACGAGGAATTGCG
 
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JMSF044G12+           CTCAGCGATTTGCCTCATTGCATCTCGCTCCAGAGAATCCAGCTCTTCCGCACTCGGTTC
                      ____________________________________________________________
consensus             CTCAGCGATTTGCCTCATTGCATCTCGCTCCAGAGAATCCAGCTCTTCCGCACTCGGTTC
 
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JMSF044G12+           CCAGTCATCCAACTCCATTGAAGTCCAATCAGAGAATTGAAAAGGAAACTTTCAAAATTT
                      ____________________________________________________________
consensus             CCAGTCATCCAACTCCATTGAAGTCCAATCAGAGAATTGAAAAGGAAACTTTCAAAATTT
 
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JMSF044G12+           TGGGGTGATTCAATATCATACAAGCAATTCAGCAAGGAAGGAAACTGAAGCTCCTGCACC
                      ____________________________________________________________
consensus             TGGGGTGATTCAATATCATACAAGCAATTCAGCAAGGAAGGAAACTGAAGCTCCTGCACC