Contig 012148:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022F14Sequence669012148 (3)ref|XP_004235731.1|9e-34PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Solanum 798012148 (3)ref|XP_011008961.1|1e-132PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus
JMSF044B09Sequence714012148 (3)ref|XP_004235731.1|1e-40PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Solanum 647023619gb|ACJ83585.1|2e-11unknown [Medicago truncatula] gb|AFK49513.1| unknown [Medicago truncatula]

Alignment

This contig is upended


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rJMSF022F14-                                                   AATTTGTGATCATCACTTT
                      ____________________________________________________________
consensus                                                      AATTTGTGATCATCACTTT
 
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rJMSF022F14-          GGAGTAAGGTCGGTTGAAGCCTCTCTCTGCAACAACAGCCCTTTTATCTCCTATCAACTT
                      ____________________________________________________________
consensus             GGAGTAAGGTCGGTTGAAGCCTCTCTCTGCAACAACAGCCCTTTTATCTCCTATCAACTT
 
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rJMSF022F14-          CGCTACCCTAAAGTAAGGAGAAGTGGTATTCTCTTTCACAGTTTTCACCTGACCAATTCT
                      ____________________________________________________________
consensus             CGCTACCCTAAAGTAAGGAGAAGTGGTATTCTCTTTCACAGTTTTCACCTGACCAATTCT
 
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rJMSF022F14-          CTCCACTACATCCATCCCTTCCAGCACTCTTCCAACCACCAAAGCTGAGCTATCCAACTC
                      ____________________________________________________________
consensus             CTCCACTACATCCATCCCTTCCAGCACTCTTCCAACCACCAAAGCTGAGCTATCCAACTC
 
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rJMSF022F14-          AGGTGAGTCTTTTGTAGCTATGATGAACTCGGTTCCATTTGGAGCCTTTCCCACTTCCTC
                      ____________________________________________________________
consensus             AGGTGAGTCTTTTGTAGCTATGATGAACTCGGTTCCATTTGGAGCCTTTCCCACTTCCTC
 
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rJMSF022F14-          TTGATCAATCTCCAGCTTCCCATTGCGTGCAACGAGTTTCACTTTTGGGGGTGGTTGTGA
                      ____________________________________________________________
consensus             TTGATCAATCTCCAGCTTCCCATTGCGTGCAACGAGTTTCACTTTTGGGGGTGGTTGTGA
 
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rJMSF022F14-          TGGATCTCTGACTATGATACTTATGCTCCCAGCTACATTCTTAGTTCCGGGGCAGCTTTC
                      ____________________________________________________________
consensus             TGGATCTCTGACTATGATACTTATGCTCCCAGCTACATTCTTAGTTCCGGGGCAGCTTTC
 
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rJMSF022F14-          ATATTGCTTCTCCCATTCAGCAACAAGGCTATCAACTGTCATGTTGCTTCCTCTTCTACT
                      ____________________________________________________________
consensus             ATATTGCTTCTCCCATTCAGCAACAAGGCTATCAACTGTCATGTTGCTTCCTCTTCTACT
 
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rJMSF022F14-          TGCAAGCTCAGCATCCACACCGTATGACCTCACCCCACCATGTTGCACATAGCTTGGCAT
JMSF022F14+                                              CACCATGTTGCACATAGCTNGGCAT
JMSF044B09+                 CTCAGCATCCACACCGTATGACCTCACCCCACCATGTTGCACATAGCTTGGCAT
                      ____________________________________________________________
consensus             TGCAAGCTCAGCATCCACACCGTATGACCTCACCCCACCATGTTGCACATAGCTTGGCAT
 
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rJMSF022F14-          GATTTTCACAAACTCTTTTCTCCTGTAACTGATGCCTGCTCTCCCACTTACGAGATTACT
JMSF022F14+           GATTTTCACAAACTCTTTTCTCCTGTAACTGATGCCTGCTCTCCCACTTACGAGATTACT
JMSF044B09+           GATTTTCACAAACTCTTTTCTCCTGTAACTGATGCCTGCTCTCCCACTTACGAGATTACT
                      ____________________________________________________________
consensus             GATTTTCACAAACTCTTTTCTCCTGTAACTGATGCCTGCTCTCCCACTTACGAGATTACT
 
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rJMSF022F14-          GAATCTTGCTGTGCCACCAGGGACAGTGTTCCCGTACAGCCCTATAACAATTCTTCCTAC
JMSF022F14+           GAATCTTGCTGTGCCACCAGGGACAGTGTTCCCGTACAGCCCTATAACAATTCTTCCTAC
JMSF044B09+           GAATCTTGCTGTGCCACCAGGGACAGTGTTCCCGTACAGCCCTATAACAATTCTTCCTAC
                      ____________________________________________________________
consensus             GAATCTTGCTGTGCCACCAGGGACAGTGTTCCCGTACAGCCCTATAACAATTCTTCCTAC
 
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rJMSF022F14-          AGGTTCCCCATCAATAGATACTTCAAGAAATGCACGGTTTGTCAGATTTTGACCTGCACA
JMSF022F14+           AGGTTCCCCATCAATAGATACTTCAAGAAATGCACGGTTTGTCAGATTTTGACCTGCACA
JMSF044B09+           AGGTTCCCCATCAATAGATACTTCAAGAAATGCACGGTTTGTCAGATTTTGACCTGCACA
                      ____________________________________________________________
consensus             AGGTTCCCCATCAATAGATACTTCAAGAAATGCACGGTTTGTCAGATTTTGACCTGCACA
 
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rJMSF022F14-          GTAGTTATTCTTTCCTGAATCATTTTCTGGTTGAGTTGCATTGGTGTTTTAAGAAACTTC
JMSF022F14+           GTAGTTATTCTTTCCTGAATCATTTTCTGGTTGAGTTGCATTGGTGTTTTTAGAAACTTC
JMSF044B09+           GTAGTTATTCTTTCCTGAATCATTTTCTGGTTGAGTTGCATTGGTGTTTTTAGAAACTTC
                      ____________________________________________________________
consensus             GTAGTTATTCTTTCCTGAATCATTTTCTGGTTGAGTTGCATTGGTGTTTTTAGAAACTTC
 
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rJMSF022F14-          ATCTGCCTTTGCCTCGCTCT-CCCCATGCCATTTTCCTTTTCGGGTACGTAAATGGTTTC
JMSF022F14+           ATCTGCCTTTGCCTCGCTCTCCCCCATGCCATTTTCCTTTTCGGTTACGTAAATGTTTTC
JMSF044B09+           ATCTGCCTTTGCCTCGCTCTCCCCCATGCCATTTTCCTTTTCGGTTACGTAAATGTTTTC
                      ____________________________________________________________
consensus             ATCTGCCTTTGCCTCGCTCTCCCCCATGCCATTTTCCTTTTCGGTTACGTAAATGTTTTC
 
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JMSF022F14+           AGAAACTTCCTCAGTCCTTACCTTGTTCTCCCCCAAGTCATTTTCTTGTTTGATTACATC
JMSF044B09+           AGAAACTTCCTCAGTCCTTACCTTGTTCTCCCCCAAGTCATTTTCTTGTTTGATTACATC
                      ____________________________________________________________
consensus             AGAAACTTCCTCAGTCCTTACCTTGTTCTCCCCCAAGTCATTTTCTTGTTTGATTACATC
 
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JMSF022F14+           AATGTTTTCAGAAACTTCCCCTGCCTTAACCTCGCTCTCCCCTGGGCTATTTTCTTGTTT
JMSF044B09+           AATGTTTTCAGAAACTTCCCCTGCCTTAACCTCGCTCTCCCCTGGGCTATTTTCTTGTTT
                      ____________________________________________________________
consensus             AATGTTTTCAGAAACTTCCCCTGCCTTAACCTCGCTCTCCCCTGGGCTATTTTCTTGTTT
 
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JMSF022F14+           GATTACATCAGTGGTTTCAGAAACTTCCTCGGCCCGTGCCTTGAACTGGTGCAATGGCAC
JMSF044B09+           GATTACATCAGTGGTTTCAGAAACTTCCTCGGCCCGTGCCTTGAACTGGTGCAATGGCAC
                      ____________________________________________________________
consensus             GATTACATCAGTGGTTTCAGAAACTTCCTCGGCCCGTGCCTTGAACTGGTGCAATGGCAC
 
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JMSF022F14+           TAGTGCTTGGGTGCCTAGGAGTAGTAGCAAGGATGAATTGGCCGAAATGGCAAGCTCTCT
JMSF044B09+           TAGTGCTTGGGTGCCTAGGAGTAGTAGCAAGGATGAATTGGCCGAAATGGCAAGCTCTCT
                      ____________________________________________________________
consensus             TAGTGCTTGGGTGCCTAGGAGTAGTAGCAAGGATGAATTGGCCGAAATGGCAAGCTCTCT
 
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JMSF022F14+           CCGCGATAACTTGGAAGATTTGTTGAGAGCTGAAGGAGAATGAGATGTGGGTGTGGCTTG
JMSF044B09+           CCGCGATAACTTGGAAGATTTGTTGAGAGCTGAAGGAGAATGAGATGTGGGTGTGGCTTG
                      ____________________________________________________________
consensus             CCGCGATAACTTGGAAGATTTGTTGAGAGCTGAAGGAGAATGAGATGTGGGTGTGGCTTG
 
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JMSF022F14+           AATCTGCTTGGGAGGTGCTGCATGTGGGTGGATGATTTTAGCC                 
JMSF044B09+           AATCTGCTTGGGAGGTGCTGCATGTGGGTGGATGATTTTAGCCGAGGGCTCAACAATCCC
                      ____________________________________________________________
consensus             AATCTGCTTGGGAGGTGCTGCATGTGGGTGGATGATTTTAGCCGAGGGCTCAACAATCCC