| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF021A08 | Sequence | 633 | 012143 (8) | ref|XP_011087201.1| | 2e-82 | PREDICTED: 30S ribosomal protein 2, chloroplastic [Sesamum indicum] | 708 | 012143 (8) | gb|KDP39809.1| | 2e-59 | hypothetical protein JCGZ_04908 [Jatropha curcas] |
| JMSF029I12 | Sequence | 652 | 012143 (8) | ref|XP_011087201.1| | 2e-87 | PREDICTED: 30S ribosomal protein 2, chloroplastic [Sesamum indicum] | 770 | 012143 (8) | ref|XP_002513193.1| | 3e-75 | ribonucleoprotein, chloroplast, putative [Ricinus communis] gb|EEF49184.1| ribon |
| JMSF043I11 | Sequence | 798 | 012143 (8) | gb|KDP39809.1| | 2e-63 | hypothetical protein JCGZ_04908 [Jatropha curcas] | 755 | 012143 (8) | gb|KDP39809.1| | 1e-61 | hypothetical protein JCGZ_04908 [Jatropha curcas] |
| JMSF050K06 | Sequence | 252 | 012143 (8) | 199 | 012143 (8) | ||||||
This contig is upended
. : . : . : . : . : . :
JMSF021A08- CCCATAAACTCTGCATTTCTCATCGGAGCTCCACCAAAAAAATGGCGACAATCTCT
JMSF029I12- GCCCCATAAACTCTGCATTTCTCATCGGAGCTCCACCAAAAAAATGGCGACAATCTCT
____________________________________________________________
consensus GCCCCATAAACTCTGCATTTCTCATCGGAGCTCCACCAAAAAAATGGCGACAATCTCT
. : . : . : . : . : . :
JMSF021A08- ACCTCTTTGATATCCCCTAATTTCCTTAAGAACCCAAAAATGGCCGTCAAGCCCCACTTC
JMSF029I12- ACCTCTTTGATATCCCCTAATTTCCTTAAGAACCCAAAAATGGCCGTCAAGCCCCACTTC
____________________________________________________________
consensus ACCTCTTTGATATCCCCTAATTTCCTTAAGAACCCAAAAATGGCCGTCAAGCCCCACTTC
. : . : . : . : . : . :
JMSF021A08- TCAAAGCTCCTTTCTCCCACCCTGAAGTCAGAGGCGCGCCCTCTCGCGCTCAGTTTGTTG
JMSF029I12- TCAAAGCTCCTTTCTCCCACCCTGAAGTCAGAGGCGCGCCCTCTCGCGCTCAGTTTGTTG
____________________________________________________________
consensus TCAAAGCTCCTTTCTCCCACCCTGAAGTCAGAGGCGCGCCCTCTCGCGCTCAGTTTGTTG
. : . : . : . : . : . :
JMSF021A08- CCGCCGGTTTCGCAACCCAGGGAGTATTTGTTACGCGGAAGGAGGCTCAATGCTGTCGCC
JMSF029I12- CCGCCGGTTTCGCAACCCAGGGAGTATTTGTTACGCGGAAGGAGGCTCAATGCTGTCGCC
____________________________________________________________
consensus CCGCCGGTTTCGCAACCCAGGGAGTATTTGTTACGCGGAAGGAGGCTCAATGCTGTCGCC
. : . : . : . : . : . :
JMSF021A08- GAAGAGGCGTCGGTCTCCACGCAGGACCCGTCTTCGCCGTCCGCCAGGCGGCTCTACGTC
JMSF029I12- GAAGAGGCGTCGGTCTCCACGCAGGACCCGTCTTCGCCGTCCGCCAGGCGGCTCTACGTC
____________________________________________________________
consensus GAAGAGGCGTCGGTCTCCACGCAGGACCCGTCTTCGCCGTCCGCCAGGCGGCTCTACGTC
. : . : . : . : . : . :
JMSF021A08- GGGAATATTCCCCGGACCGTCACAAACGATGAACTCCGGAAAATTGTGGAAGAACACGGC
JMSF029I12- GGGAATATTCCCCGGACCGTCACAAACGATGAACTCCGGAAAATTGTGGAAGAACACGGC
rJMSF029I12+ CGGC
____________________________________________________________
consensus GGGAATATTCCCCGGACCGTCACAAACGATGAACTCCGGAAAATTGTGGAAGAACACGGC
. : . : . : . : . : . :
JMSF021A08- GCCGTAGAGAAGGCTGAGGTTATGTATGATAAATATTCGGGAAGGAGCCGCCGATTTGGA
JMSF029I12- GCCGTAGAGAAGGCAGAGGTTATGTATGATAAATATTCGGGAAGGAGCCGCCGATTTGGA
rJMSF029I12+ GCCGTAGAGAAGGCAGAGGTTATGTATGATAAATATTCGGGAAGGAGCCGCCGATTTGGA
rJMSF043I11+ AGGAGCCGCCGATTNGGA
rJMSF021A08+ A
JMSF043I11- GAAGGAGCCGCCGATTTGGA
____________________________________________________________
consensus GCCGTAGAGAAGGCAGAGGTTATGTATGATAAATATTCGGGAAGGAGCCGCCGATTTGGA
. : . : . : . : . : . :
JMSF021A08- TTTGTTACGATGAAGACAGCTGAGGATGCAAATGCAGCTATTGAAAAGCTTAATGGAACT
JMSF029I12- TTTGTTACGATGAAGACAGCTGAGGATGCAAATGCAGCTATTGAAAAGCTTAATGGAACT
rJMSF029I12+ TTTGTTACGATGAAGACAGCTGAGGATGCAAATGCAGCTATTGAAAAGCTTAATGGAACT
rJMSF043I11+ TTTGTTACGATGNAGACAGCTGAGGATGCAAATGCAGCTATTGAAAAGCTTAATGGAACT
rJMSF021A08+ TTTGTTACGATGAAGACAGCTGAGGATGCAAATGCAGCTATTGAAAAGCTTAATGGAACT
JMSF043I11- TTTGTTACGATGAAGACAGCTGAGGATGCAAATGCAGCTATTGAAAAGCTTAATGGAACT
____________________________________________________________
consensus TTTGTTACGATGAAGACAGCTGAGGATGCAAATGCAGCTATTGAAAAGCTTAATGGAACT
. : . : . : . : . : . :
JMSF021A08- GAAGTTGGGGGCCGTGCAATAAAAGTGAATATAACTGAAAAGCCATTGCAAGGTGGGGAC
JMSF029I12- GAAGTTGGGGGCCGTGCAATAAAAGTGAATATAACTGAAAAGCCATTGCAAGGTGGGGAC
rJMSF029I12+ GAAGTTGGGGGCCGTGCAATAAAAGTGAATATAACTGAAAAGCCATTGCAAGGTGGGGAC
rJMSF043I11+ GAAGTTGGGGGCCGTGCAATAAAAGTGAATATAACTGAAAAGCCATTGCAAGGTGGGGAC
rJMSF021A08+ GAAGTTGGGGGCCGTGCAATAAAAGTGAATATAACTGAAAAGCCATTGCAAGGTGGGGAC
JMSF043I11- GAAGTTGGGGGCCGTGCAATAAAAGTGAATATAACTGAAAAGCCATTGCAAGGTGGGGAC
____________________________________________________________
consensus GAAGTTGGGGGCCGTGCAATAAAAGTGAATATAACTGAAAAGCCATTGCAAGGTGGGGAC
. : . : . : . : . : . :
JMSF021A08- TTGTCGTTTCTACAGGGGGAGGATTCACAGTTCATTGACAGTCCTCACAAGGTTTATGTT
JMSF029I12- TTGTCGTTTCTACAGGGGGAGGATTCACAGTTCATTGACAGTCCTCACAAGGTTTATGTT
rJMSF029I12+ TTGTCGTTTCTACAGGGGGAGGATTCACAGTTCATTGACAGTCCTCACAAGGTTTATGTT
rJMSF043I11+ TTGTCGTTTCTACAGGGGGAGGATTCACAGTTCATTGACAGTCCTCACAAGGTTTATGTT
rJMSF021A08+ TTGTCGTTTCTACAGGGGGAGGATTCACAGTTCATTGACAGTCCTCACAAGGTTTATGTT
JMSF043I11- TTGTCGTTTCTACAGGGGGAGGATTCACAGTTCATTGACAGTCCTCACAAGGTTTATGTT
____________________________________________________________
consensus TTGTCGTTTCTACAGGGGGAGGATTCACAGTTCATTGACAGTCCTCACAAGGTTTATGTT
. : . : . : . : . : . :
JMSF021A08- GGCAATCTTGCAAAGACAGTAACCACTGAGTCACT
JMSF029I12- GGCAATCTTGCAAAGACAGTAACCACTGAGTCACTGAAAAGCTTTTTTGCTGAG
rJMSF029I12+ GGCAATCTTGCAAAGACAGTAACCACTGAGTCACTGAAAAGCTTTTTTGCTGAGAAGGGG
rJMSF043I11+ GGCAATCTTGCAAAGACAGTAACCACTGAGTCACTGAAAAGCTTTTTTGCTGAGAAGGGG
rJMSF021A08+ GGCAATCTTGCAAAGACAGTAACCACTGAGTCACTGAAAAGCTTTTTTGCTGAGAAGGGG
JMSF043I11- GGCAATCTTGCAAAGACAGTAACCACTGAGTCACTGAAAAGCTTTTTTGCTGAGAAGGGG
____________________________________________________________
consensus GGCAATCTTGCAAAGACAGTAACCACTGAGTCACTGAAAAGCTTTTTTGCTGAGAAGGGG
. : . : . : . : . : . :
rJMSF029I12+ ACGGTTGTCAGTGCAAAGGTATCCCGAATTCCGGGGACCTCAAAATCCAGTGGGTTTGGG
rJMSF043I11+ ACGGTTGTCAGTGCAAAGGTATCCCGAATTCCGGGGACCTCAAAATCCAGTGGGTTTGGG
rJMSF021A08+ ACGGTTGTCAGTGCAAAGGTATCCCGAATTCCGGGGACCTCAAAATCCAGTGGGTTTGGG
JMSF043I11- ACGGTTGTCAGTGCAAAGGTATCCCGAATTCCGGGGACCTCAAAATCCAGTGGGTTTGGG
____________________________________________________________
consensus ACGGTTGTCAGTGCAAAGGTATCCCGAATTCCGGGGACCTCAAAATCCAGTGGGTTTGGG
. : . : . : . : . : . :
rJMSF029I12+ TTTGTCTCATTTTCTTCGGAAGAGGATGTAGAAGCTGCTATATCATCTTTTAATAATTCG
rJMSF043I11+ TTTGTCTCATTTTCTTCGGAAGAGGATGTAGAAGCTGCTATATCATCTTTTAATAATTCG
rJMSF021A08+ TTTGTCTCATTTTCTTCGGAAGAGGATGTAGAAGCTGCTATATCATCTTTTAATAATTCG
JMSF043I11- TTTGTCTCATTTTCTTCGGAAGAGGATGTAGAAGCTGCTATATCATCTTTTAATAATTCG
____________________________________________________________
consensus TTTGTCTCATTTTCTTCGGAAGAGGATGTAGAAGCTGCTATATCATCTTTTAATAATTCG
. : . : . : . : . : . :
rJMSF029I12+ CTGCTTGAAGGGCAGAAGATTCGTGTAAATAAAGCATGAATAAGTGGCAACGAAAACGCC
rJMSF043I11+ CTGCTTGAAGGGCAGAAGATTCGTGTAAATAAAGCATGAATAAGTGGCAACGAAAACGCC
rJMSF021A08+ CTGCTTGAAGGGCAGAAGATTCGTGTAAATAAAGCATGAATAAGTGGCAACGAAAACGCC
JMSF043I11- CTGCTTGAAGGGCAGAAGATTCGTGTAAATAAAGCATGAATAAGTGGCAACGAAAACGCC
____________________________________________________________
consensus CTGCTTGAAGGGCAGAAGATTCGTGTAAATAAAGCATGAATAAGTGGCAACGAAAACGCC
. : . : . : . : . : . :
rJMSF029I12+ TTGCCTTGTGCATTACGCTTAACACTGAAGACTTGTGAGTTGATTTCTCGAGGGCAATGA
rJMSF043I11+ TTGCCTTGTGCATTACGCTTAACACTGAAGACTTGTGAGTTGATTTCTCGAGGGC-ATGA
rJMSF021A08+ TTGCCTTGTGCATTACGCTTAACACTGAAGACTTGTGAGTTGATTTCTCGAGGGCAATGA
JMSF043I11- TTGCCTTGTGCATTACGCTTAACACTGAAGACTTGTGAGTTGATTTCTCGAGGGC-ATGA
____________________________________________________________
consensus TTGCCTTGTGCATTACGCTTAACACTGAAGACTTGTGAGTTGATTTCTCGAGGGC-ATGA
. : . : . : . : . : . :
rJMSF050K06+ GAGAAGCTTGTTGTGCTACGAGCTCCAATTTGGCCGGCCAATCTGCGATTTG
rJMSF029I12+ CAGTGGGGGAGAAGCTTGTTGTGCTACGAGCTCCAATTTGGCCGGCCAATCTGCGATTTG
rJMSF043I11+ CAGTGGGGGAGAAGCTTGTTGTGCTACGAGCTCCAATTTGGCCGGCCAATCTGCGATTTG
rJMSF021A08+ CAGTGGGGGAGAAGCTTGTTGTGCTACGAGCTCCAATTTGGCCGGCCAATCTGCGATTTG
JMSF050K06- GAGAAGCTTGTTGTGCTACGAGCTCCAATTTGGCCGGCCAATCTGCGATTTG
JMSF043I11- CAGTGGGGGAGAAGCTTGTTGTGCTACGAGCTCCAATTTGGCCGGCCAATCTGCGATTTG
____________________________________________________________
consensus CAGTGGGGGAGAAGCTTGTTGTGCTACGAGCTCCAATTTGGCCGGCCAATCTGCGATTTG
. : . : . : . : . : . :
rJMSF050K06+ CGTTCTTACAATTTTAGTTTAGTGAAAGCCCATTTTGTTTGTTATCATGTTGTAAAGAAA
rJMSF029I12+ CGTTCTTACAATTTTAGTTTAGTGAAAGCCCATTTTGTTTGTTATCATGTTGTAAAGAAA
rJMSF043I11+ CGTTCTTACAATTTTAGTTTAGTGAAAGCCCATTTTGTTTGTTATCATGTTGTAAAGAAA
rJMSF021A08+ CGTTCTTACAATTTTAGTTTAGTGAAAGCCCATTTTGTTTGTTATCATGTTGTAAAGAAA
JMSF050K06- CGTTCTTACAATTTTAGTTTAGTGAAAGCCCATTTTGTTTGTTATCATGTTGTAAAGAAA
JMSF043I11- CGTTCTTACAATTTTAGTTTAGTGAAAGCCCATTTTGTTTGTTATCATGTTGTAAAGAAA
____________________________________________________________
consensus CGTTCTTACAATTTTAGTTTAGTGAAAGCCCATTTTGTTTGTTATCATGTTGTAAAGAAA
. : . : . : . : . : . :
rJMSF050K06+ CATCTGATCTTTAGACTAAATCCCTGTAGGGCTCTTGGCTGTATGTTTGCAGTTTTTTTG
rJMSF029I12+ CATCTGATCTTTAGACTAAATCCCTGTAGGGCTCTTGGCTGTATGTTTGCAGTTTTTTTG
rJMSF043I11+ CATCTGATCTTTAGACTAAATCCCTGTAGGGCTCTTGGCTGTATGTTTGCAGTTTTTTTG
rJMSF021A08+ CATCTGATCTTTAGACTAAATCCCTGTAGGGCTCTTGGCTGTATGTTTGCAGTTTTTTTG
JMSF050K06- CATCTGATCTTTAGACTAAATCCCTGTAGGGCTCTTGGCTGTATGTTTGCAGTTTTTTTG
JMSF043I11- CATCTGATCTTTAGACTAAATCCCTGTAGGGCTCTTGGCTGTATGTTTGCAGTTTTTTTG
____________________________________________________________
consensus CATCTGATCTTTAGACTAAATCCCTGTAGGGCTCTTGGCTGTATGTTTGCAGTTTTTTTG
. : . : . : . : . : . :
rJMSF050K06+ GGACCACTGTCATAAACTCACACAGCC
rJMSF029I12+ GGA-CACTGTCATAAACTCACACAGCCTTTCTAAGGCTCTCTACT
rJMSF043I11+ GGA-CACTGTCATAAACTCACACAGCCTTTCTAAGGCTCTCTACTTGCTTGGTAATATAC
rJMSF021A08+ GGA-CACTGTCATAAACTCACACAGCCTTTCTAAGGCTCTCTACT
JMSF050K06- GGA-CACTGTCATAAACTCACACAGCCTTTCTAAGGCTCTCTACTTGCTTGGTAATATAC
JMSF043I11- GGA-CACTGTCATAAACTCACACAGCCTTTCTAAGGCTCTCTACTTGCTTGGTAATATAC
____________________________________________________________
consensus GGA-CACTGTCATAAACTCACACAGCCTTTCTAAGGCTCTCTACTTGCTTGGTAATATAC
. : . : . : . : . : . :
rJMSF043I11+ ACTTGTTCATCA
JMSF050K06- ACTTGTTCATCA
JMSF043I11- ACTTGTTCATCATTGCTTGCTTTAAATATATATTGTCTTCGCAGTATATGTTCAAAAAAA
____________________________________________________________
consensus ACTTGTTCATCATTGCTTGCTTTAAATATATATTGTCTTCGCAGTATATGTTCAAAAAAA