Contig 012142:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033M23Sequence717012142 (4)228010070 (3)
JMSF039P09Sequence655012142 (4)397010070 (3)
JMSF043H24Sequence762012142 (4)261010070 (3)
JMSF043K22Sequence681015834214012142 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF043H24+ AAGTGAGAAACAAATTGACAATGCCATGGTACAAATTACACA
                      ____________________________________________________________
consensus AAGTGAGAAACAAATTGACAATGCCATGGTACAAATTACACA
 
. : . : . : . : . : . :
JMSF033M23+ AGACATACATGTAGGAATACCTTTCTCATACACTTATAAATATACCTAAACAT
JMSF043H24+ ATACCCAAGACATACATGTAGGAATACCTTTCTCATACACTTATAAATATACCTAAACAT
                      ____________________________________________________________
consensus ATACCCAAGACATACATGTAGGAATACCTTTCTCATACACTTATAAATATACCTAAACAT
 
. : . : . : . : . : . :
JMSF033M23+ TTAATGTGGATGGTAAGTGTTGACTATTATATACTAATGTTTGATTGAGACTTCTTAGCA
JMSF039P09+ TTAATGTGGATGGTAAGTGTTGACTATTATATACTAATGTTTGATTGAGACTTCTTAGCA
JMSF043H24+ TTAATGTGGATGGTAAGTGTTGACTATTATATACTAATGTTTGATTGAGACTTCTTAGCA
                      ____________________________________________________________
consensus TTAATGTGGATGGTAAGTGTTGACTATTATATACTAATGTTTGATTGAGACTTCTTAGCA
 
. : . : . : . : . : . :
JMSF033M23+ TGTGTACTACTTGGTATCTCTATATATACTTCATTTAAGAATGCAACATGTACACTATAT
JMSF039P09+ TGTGTACTACTTGGTATCTCTATATATACTTCATTTAAGAATGCAACATGTACACTATAT
JMSF043H24+ TGTGTACTACTTGGTATCTCTATATATACTTCATTTAAGAATGCAACATGTACACTATAT
                      ____________________________________________________________
consensus TGTGTACTACTTGGTATCTCTATATATACTTCATTTAAGAATGCAACATGTACACTATAT
 
. : . : . : . : . : . :
JMSF033M23+ ATTCATTCCAAACGAGAACTTCTGCAAGTTTTTAGCTAACAATTACAACAATGAAAAAAT
JMSF039P09+ ATTCATTCCAAACGAGAACTTCTGCAAGTTTTTAGCTAACAATTACAACAATGAAAAAAT
JMSF043H24+ ATTCATTCCAAACGAGAACTTCTGCAAGTTTTTAGCTAACAATTACAACAATGAAAAAAT
                      ____________________________________________________________
consensus ATTCATTCCAAACGAGAACTTCTGCAAGTTTTTAGCTAACAATTACAACAATGAAAAAAT
 
. : . : . : . : . : . :
JMSF033M23+ TGACTAGCTCAACTATCATTCGTGGAAAAAGAAAGCTTGATGTTGAAGATAAAGGTAAAA
JMSF039P09+ TGACTAGCTCAACTATCATTCGTGGAAAAAG-AAGCTTGATGTTGAAGATAAAGGTAAAA
rJMSF043K22+ TTCGTGGAAAAAGAAAGNNNGATGTTGAAGATAAAGGTAAAA
JMSF043H24+ TGACTAGCTCAACTATCATTCGTGGAAAAAGAAAGCTTGATGTTGAAGATAAAGGTAAAA
                      ____________________________________________________________
consensus TGACTAGCTCAACTATCATTCGTGGAAAAAGAAAGCTTGATGTTGAAGATAAAGGTAAAA
 
. : . : . : . : . : . :
JMSF033M23+ ATGAAACATACCTGTTGTTCTTCATTAAAATTGTAACAAATGCTAACTTACTTTTTTGGT
JMSF039P09+ ATGAAACATACCTGTTGTTCTTCATTAAAATTGTAACAAATGCTAACTTACTTTTTTGGT
rJMSF043K22+ ATGNAACATACCNGNTGTTTTTCNNTAAAATTGTAACNAATGCTAACTTACTTTTNTGGT
JMSF043H24+ ATGAAACATACCTGTTGTTCTTCATTAAAATTGTAACAAATGCTAACTTACTTTTTTGGT
                      ____________________________________________________________
consensus ATGAAACATACCTGTTGTTCTTCATTAAAATTGTAACAAATGCTAACTTACTTTTTTGGT
 
. : . : . : . : . : . :
JMSF033M23+ TTGCAATACTCATCTTCTTTGCTTTCCATTTGTGTTCTATATCTGCACCAATTTGGCTCC
JMSF039P09+ TTGCAATACTCATCTTCTTTGCTTTCCATTTGTGTTCTATATCTGCACCAATTTGGCTCC
rJMSF043K22+ TTGCAATACTCATNTTCTTTGCTTTCCNTTTGTGTTNTATATNTGCNCCAATTTGGCTCC
JMSF043H24+ TTGCAATACTCATCTTCTTTGCTTTCCATTTGTGTTCTATATCTGCACCAATTTGGCTCC
                      ____________________________________________________________
consensus TTGCAATACTCATCTTCTTTGCTTTCCATTTGTGTTCTATATCTGCACCAATTTGGCTCC
 
. : . : . : . : . : . :
JMSF033M23+ CTTTTATCTGTTTTTTGGTCTGTGTATTGAGAGAGTGTAAATGCAGCACTCTCATGTACA
JMSF039P09+ CTTTTATCTGTTTTTTGGTCTGTGTATTGAGAGAGTGTAAATGCAGCACTCTCATGTACA
rJMSF043K22+ C-TCNATCTGTTTTTTGGTCTGNGTATTGAGAGAGTGTAAATGCAGC
JMSF043H24+ CTTTTATCTGTTTTTTGGTCTGTGTATTGAGAGAGTGTAAATGCAGCACTCTCATGTACA
                      ____________________________________________________________
consensus CTTTTATCTGTTTTTTGGTCTGTGTATTGAGAGAGTGTAAATGCAGCACTCTCATGTACA
 
. : . : . : . : . : . :
JMSF033M23+ CC
JMSF039P09+ CC
JMSF043H24+ CCGTCAGAAAGAATCTTTATCTATATCCATGGAAGACGATGCTCCTTAATCAACACAGTC
                      ____________________________________________________________
consensus CCGTCAGAAAGAATCTTTATCTATATCCATGGAAGACGATGCTCCTTAATCAACACAGTC
 
. : . : . : . : . : . :
JMSF043H24+ TAGGATTCAGACTGTACGGAATATTTAGAAGATGTTTTGGGATGGTGAAGCGAGGGAATT
                      ____________________________________________________________
consensus TAGGATTCAGACTGTACGGAATATTTAGAAGATGTTTTGGGATGGTGAAGCGAGGGAATT
 
. : . : . : . : . : . :
JMSF043H24+ AGAAGAAGGTAGGTAGTCTTAGCGTTAAGGAGGAGACTGAAAGACAGGCTGCAACAGTTC
                      ____________________________________________________________
consensus AGAAGAAGGTAGGTAGTCTTAGCGTTAAGGAGGAGACTGAAAGACAGGCTGCAACAGTTC
 
. : . : . : . : . : . :
JMSF043H24+ TCGGATAGAAACAAGGTGGACAGAGACGGAGATGTTCAGACAAGGGAGGGCATGCATCTC
                      ____________________________________________________________
consensus TCGGATAGAAACAAGGTGGACAGAGACGGAGATGTTCAGACAAGGGAGGGCATGCATCTC