Contig 012140:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF042M11Sequence784012140 (2)ref|XP_009789754.1|2e-122PREDICTED: UDP-arabinose 4-epimerase 1 [Nicotiana sylvestris] ref|XP_009789755.1702012140 (2)gb|KDP34859.1|7e-32hypothetical protein JCGZ_09147 [Jatropha curcas]

Alignment

This contig is upended


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rJMSF042M11-                       ATAAGTACAAACATAAAGAAAAGCCACATTTTATGTAAACCATTTCA
                      ____________________________________________________________
consensus                          ATAAGTACAAACATAAAGAAAAGCCACATTTTATGTAAACCATTTCA
 
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rJMSF042M11-          TGATGCTTATTATTACTCTCTCTCTCTATATATATAGATCTCATGATGTTATGAATCTCA
                      ____________________________________________________________
consensus             TGATGCTTATTATTACTCTCTCTCTCTATATATATAGATCTCATGATGTTATGAATCTCA
 
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rJMSF042M11-          ATATAGATCTCATCATTATATTTATTAATACAGAATGTATACTCTTCAACTTGCGTTATA
                      ____________________________________________________________
consensus             ATATAGATCTCATCATTATATTTATTAATACAGAATGTATACTCTTCAACTTGCGTTATA
 
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rJMSF042M11-          TCAAAACGCATGTATAATTATATTTGACTAGTATAGTATAACAATGAATGGATAAATAAG
                      ____________________________________________________________
consensus             TCAAAACGCATGTATAATTATATTTGACTAGTATAGTATAACAATGAATGGATAAATAAG
 
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rJMSF042M11-          CTGCCTGAGCTTCTTCTACCTACATGCTTTACTAATACCCTCACTATGTTTACTACCTAT
JMSF042M11+                                                                   CTAT
                      ____________________________________________________________
consensus             CTGCCTGAGCTTCTTCTACCTACATGCTTTACTAATACCCTCACTATGTTTACTACCTAT
 
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rJMSF042M11-          AGGCTATAGGTGTGAAAGAATAAATATTGAACTCAACCCGGCCTTACCCCACAAATCTAT
JMSF042M11+           AGGCTATAGGTGTGAAAGAATAAATATTGAACTCAACCCGGCCTTACCCCACAAATCTAT
                      ____________________________________________________________
consensus             AGGCTATAGGTGTGAAAGAATAAATATTGAACTCAACCCGGCCTTACCCCACAAATCTAT
 
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rJMSF042M11-          GGTATAATAAGACTAATAGCGAATAAAGCTCTTGCCATGAATGGGGTACTGCAAAATATC
JMSF042M11+           GGTATAATAAGACTAATAGCGAATAAAGCTCTTGCCATGAATGGGGTACTGCAAAATATC
                      ____________________________________________________________
consensus             GGTATAATAAGACTAATAGCGAATAAAGCTCTTGCCATGAATGGGGTACTGCAAAATATC
 
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rJMSF042M11-          GATGCGAGATCAGCAAAAACTGAGCTGTATGTATAGTGTATGTATGGGGTTCTTGTTAAT
JMSF042M11+           GATGCGAGATCAGCAAAAACTGAGCTGTATGTATAGTGTATGTATGGGGTTCTTGTTAAT
                      ____________________________________________________________
consensus             GATGCGAGATCAGCAAAAACTGAGCTGTATGTATAGTGTATGTATGGGGTTCTTGTTAAT
 
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rJMSF042M11-          GTTCCGCGATTAATCTATGGATTATTATGAAGCCATTGCTCGAGGTGATCCATAGCCATT
JMSF042M11+           GTTCCGCGATTAATCTATGGATTATTATGAAGCCATTGCTCGAGGTGATCCATAGCCATT
                      ____________________________________________________________
consensus             GTTCCGCGATTAATCTATGGATTATTATGAAGCCATTGCTCGAGGTGATCCATAGCCATT
 
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rJMSF042M11-          GAGATGCGACTTCTGCCACCTCCACGCGATCTGCAAACTCTTTTGAAGATCAGTGTGCTT
JMSF042M11+           GAGATGCGACTTCTGCCACCTCCACGCGATCTGCAAACTCTTTTGAAGATCAGTGTGCTT
                      ____________________________________________________________
consensus             GAGATGCGACTTCTGCCACCTCCACGCGATCTGCAAACTCTTTTGAAGATCAGTGTGCTT
 
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rJMSF042M11-          TGCTGACCAGTTTAGTTCAAGCCTGATCTTGGTTGGATCACTGTATACTTCTGCGTAATC
JMSF042M11+           TGCTGACCAGTTTAGTTCAAGCCTGATCTTGGTTGGATCACTGTATACTTCTGCGTAATC
                      ____________________________________________________________
consensus             TGCTGACCAGTTTAGTTCAAGCCTGATCTTGGTTGGATCACTGTATACTTCTGCGTAATC
 
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rJMSF042M11-          ACCTGGTCGACGGGGAAGGTAGTCCACCTTAATTGATACCCCC                 
JMSF042M11+           ACCTGGTCGACGGGGAAGGTAGTCCACCTTAATTGATACCCCCGTTGCTTTCTTACAGGC
                      ____________________________________________________________
consensus             ACCTGGTCGACGGGGAAGGTAGTCCACCTTAATTGATACCCCCGTTGCTTTCTTACAGGC
 
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JMSF042M11+           ATCCACAAACTCCTTCACGGATCTACCTCTCCCAGTGCCCACATTGTAGATCCCAACATT
                      ____________________________________________________________
consensus             ATCCACAAACTCCTTCACGGATCTACCTCTCCCAGTGCCCACATTGTAGATCCCAACATT
 
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JMSF042M11+           CCCAGGAGTTGCCTTCTCTAGTGCTTTAACATGCGCGTCTACAAGATCAGTAACGTCAAT
                      ____________________________________________________________
consensus             CCCAGGAGTTGCCTTCTCTAGTGCTTTAACATGCGCGTCTACAAGATCAGTAACGTCAAT
 
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JMSF042M11+           ATAATCCCGAATGCATGTCCCATCTAGTGTCTTATAGTCCGTTCCTTTAACCTTAAGCCC
                      ____________________________________________________________
consensus             ATAATCCCGAATGCATGTCCCATCTAGTGTCTTATAGTCCGTTCCTTTAACCTTAAGCCC
 
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JMSF042M11+           AGGAATGATTCCACGAGCTGCATCAAAGCAAGCACCTGATATCCTCCCATGTTCACGAAG
                      ____________________________________________________________
consensus             AGGAATGATTCCACGAGCTGCATCAAAGCAAGCACCTGATATCCTCCCATGTTCACGAAG
 
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JMSF042M11+           CTCAGGACGTGGAGCTTCTCCTAACCTTCCCTCTGGATCTGAGCCAATTACATTGAAGTA
                      ____________________________________________________________
consensus             CTCAGGACGTGGAGCTTCTCCTAACCTTCCCTCTGGATCTGAGCCAATTACATTGAAGTA
 
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JMSF042M11+           TCTCAAAATCATGACAGCCATCTTTGAATTTTTATGAAAATCAAGAATAATATCCTCCGC
                      ____________________________________________________________
consensus             TCTCAAAATCATGACAGCCATCTTTGAATTTTTATGAAAATCAAGAATAATATCCTCCGC