Contig 012137:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001C22Sequence466012137 (4)ref|XP_010257634.1|1e-57PREDICTED: superoxide dismutase [Cu-Zn] 2 [Nelumbo nucifera]712012137 (4)ref|XP_006349575.1|2e-86PREDICTED: superoxide dismutase [Cu-Zn] 2-like [Solanum tuberosum]
JMSF042E04Sequence714012137 (4)ref|XP_006349575.1|3e-87PREDICTED: superoxide dismutase [Cu-Zn] 2-like [Solanum tuberosum]672012137 (4)ref|XP_006349575.1|2e-87PREDICTED: superoxide dismutase [Cu-Zn] 2-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF001C22-                GTGTTAGACTATTATTACTGGGCTTCTCCATCTCCGATTCATGGAATAATCGGGA
rJMSF042E04+                 GTTAGACTATTATTACTGGGCTTCTCCATCTCCGATTCATGGAATAATCGGGA
rJMFF001C22+                 GTTAGACTATTATTACTGGGCTTCTCCATCTCCGATTCATGGAATAATCGGGA
JMSF042E04-                  GTTAGACTATTATTACTGGGCTTCTCCATCTCCGATTCATGGAATAATCGGGA
                      ____________________________________________________________
consensus                  GTGTTAGACTATTATTACTGGGCTTCTCCATCTCCGATTCATGGAATAATCGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF001C22-           CGGCATAATACGATAGCTTTTATTGCGATGAAAACGAAGTGCAAGGCGGAGAACGGTGGT
rJMSF042E04+          CGGCATAATACGATAGCTTTTATTGCGGTGAAAACGAAGTGCAAGGCGGAGAACGGTGGT
rJMFF001C22+          CGGCATAATACGATAGCTTTTATTGCGATGAAAACGAAGTGCAAGGCGGAGAACGGTGGT
JMSF042E04-           CGGCATAATACGATAGCTTTTATTGCGGTGAAAACGAAGTGCAAGGCGGAGAACGGTGGT
                      ____________________________________________________________
consensus             CGGCATAATACGATAGCTTTTATTGCGGTGAAAACGAAGTGCAAGGCGGAGAACGGTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF001C22-           GGCAATGGGCGGCCTGAAAGCGGTGGCTATCATCTCCGGCGACCATAACGTCAAAGGCTC
rJMSF042E04+          GGCAATGGGCGGCCTGAAAGCGGTGGCTATCATCTCCGGCGACCATAACGTCAAAGGCTC
rJMFF001C22+          GGCAATGGGCGGCCTGAAAGCGGTGGCTATCATCTCCGGCGACCATAACGTCAAAGGCTC
JMSF042E04-           GGCAATGGGCGGCCTGAAAGCGGTGGCTATCATCTCCGGCGACCATAACGTCAAAGGCTC
                      ____________________________________________________________
consensus             GGCAATGGGCGGCCTGAAAGCGGTGGCTATCATCTCCGGCGACCATAACGTCAAAGGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF001C22-           TCTACAATTCATCCAGCAATCCGATGGGGCAACCTACGTGAGAGGAAAAATATCAGGGCT
rJMSF042E04+          TCTACAATTCATCCAGCAATCCGATGGGGCAACCTACGTGAGAGGAAAAATATCAGGGCT
rJMFF001C22+          TCTACAATTCATCCAGCAATCCGATGGGGCAACCTACGTGAGAGGAAAAATATCAGGGCT
JMSF042E04-           TCTACAATTCATCCAGCAATCCGATGGGGCAACCTACGTGAGAGGAAAAATATCAGGGCT
                      ____________________________________________________________
consensus             TCTACAATTCATCCAGCAATCCGATGGGGCAACCTACGTGAGAGGAAAAATATCAGGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF001C22-           CAATCCGGGGCTTCACGGTTTCCATATTCATTCTTTCGGTGACACCACCAACGGCTGCAA
rJMSF042E04+          CAATCCGGGGCTTCACGGTTTCCATATTCATTCTTTCGGTGACACCACCAACGGCTGCAA
rJMFF001C22+          CAATCCGGGGCTTCACGGTTTCCATATTCATTCTTTCGGTGACACCACCAACGGCTGCAA
JMSF042E04-           CAATCCGGGGCTTCACGGTTTCCATATTCATTCTTTCGGTGACACCACCAACGGCTGCAA
                      ____________________________________________________________
consensus             CAATCCGGGGCTTCACGGTTTCCATATTCATTCTTTCGGTGACACCACCAACGGCTGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF001C22-           TTTCACTGGACCTCACTTTAATCCCTTTAAGAAGGATCATGGAGCTCCAAATCATGAAGA
rJMSF042E04+          TTCCACTGGACCTCACTTTAATCCCTTTAAGAAGGATCATGGAGCTCCAAATCATGAAGA
rJMFF001C22+          TTTCACTGGACCTCACTTTAATCCCTTTAAGAAGGATCATGGAGCTCCAAATCATGAAGA
JMSF042E04-           TTCCACTGGACCTCACTTTAATCCCTTTAAGAAGGATCATGGAGCTCCAAATCATGAAGA
                      ____________________________________________________________
consensus             TTTCACTGGACCTCACTTTAATCCCTTTAAGAAGGATCATGGAGCTCCAAATCATGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF001C22-           GCGGCATGCTGGTGATTTAGGCAACATTGTTGCTGGCCCTGATGGGGTTGCTGAGGTTTC
rJMSF042E04+          GCGGCATGCTGGTGATTTAGGCAACATTGTTGCTGGCCCTGATGGGGTTGCTGAGGTTTC
rJMFF001C22+          GCGGCATGCTGGTGATTTAGGCAACATTGTTGCTGGCCCTGATGGGGTTGCTGAGGTTTC
JMSF042E04-           GCGGCATGCTGGTGATTTAGGCAACATTGTTGCTGGCCCTGATGGGGTTGCTGAGGTTTC
                      ____________________________________________________________
consensus             GCGGCATGCTGGTGATTTAGGCAACATTGTTGCTGGCCCTGATGGGGTTGCTGAGGTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF001C22-           AGTTCTGGATATGCAGATTCCTCTAACGGGTGCGAACTCTATTTTGGGAAG         
rJMSF042E04+          AGTTCTGGATATGCAGATTCCTCTAACGGGTGCGAACTCTATTTTGGGAAGAGCGGTAGT
rJMFF001C22+          AGTTCTGGATATGCAGATTCCTCTAACGGGTGCGAACTCTATTTTGGGAAGAGCGGTAGT
JMSF042E04-           AGTTCTGGATATGCAGATTCCTCTAACGGGTGCGAACTCTATTTTGGGAAGAGCGGTAGT
                      ____________________________________________________________
consensus             AGTTCTGGATATGCAGATTCCTCTAACGGGTGCGAACTCTATTTTGGGAAGAGCGGTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042E04+          TGTTCATGCTGATCCTGATGATCTAGGAAGAGGTGGACATGAGCTTAGTAAGACAACTGG
rJMFF001C22+          TGTTCATGCTGATCCTGATGATCTAGGAAGAGGTGGACATGAGCTTAGTAAGACAACTGG
JMSF042E04-           TGTTCATGCTGATCCTGATGATCTAGGAAGAGGTGGACATGAGCTTAGTAAGACAACTGG
                      ____________________________________________________________
consensus             TGTTCATGCTGATCCTGATGATCTAGGAAGAGGTGGACATGAGCTTAGTAAGACAACTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042E04+          GAACGCAGGTGCAAGAGTTGGCTGTGGGATTATTGGGCTTCAGTCATCTGTTTAGAGATT
rJMFF001C22+          GAACGCAGGTGCAAGAGTTGGCTGTGGGATTATTGGGCTTCAGTCATCTGTTTAGAGATT
JMSF042E04-           GAACGCAGGTGCAAGAGTTGGCTGTGGGATTATTGGGCTTCAGTCATCTGTTTAGAGATT
                      ____________________________________________________________
consensus             GAACGCAGGTGCAAGAGTTGGCTGTGGGATTATTGGGCTTCAGTCATCTGTTTAGAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042E04+          TCAGTTTCTTTTCCTGCTGAAGAACAGTATTGCAAGTTACAATGTACTGTTTTTTTCTTT
rJMFF001C22+          TCAGTTTCTTTTCCTGCTGAAGAACAGTATTGCAAGTTACAATGTACTGTTTTTTTCTTT
JMSF042E04-           TCAGTTTCTTTTCCTGCTGAAGAACAGTATTGCAAGTTACAATGTACTGTTTTTTTCTTT
                      ____________________________________________________________
consensus             TCAGTTTCTTTTCCTGCTGAAGAACAGTATTGCAAGTTACAATGTACTGTTTTTTTCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042E04+          TCCTGTACCAAATGAT                                            
rJMFF001C22+          TCCTGTACCAAATGATTATCAAAGTATACAGGATTCATCGATTCAGTCACA         
JMSF042E04-           TCCTGTACCAAATGATTATCAAAGTATACAGGATTCATCGATTCAGTCACAAAAAAAAAA
                      ____________________________________________________________
consensus             TCCTGTACCAAATGATTATCAAAGTATACAGGATTCATCGATTCAGTCACAAAAAAAAAA