Contig 012136:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF042D04-                                                           CCAGGGGTTTC
                      ____________________________________________________________
consensus                                                              CCAGGGGTTTC
 
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rJMSF042D04-          AATACATAGTTTTAGTTTAACAGTAACAAGCCATTTAAGATTCAGGCTGGCATGGTTTCA
rJMSF028L24-           ATACATAGTTTTAGTTTAACAGTAACAAGCCATTTAAGATTCAGGCTGGCATGGTTTCA
                      ____________________________________________________________
consensus             AATACATAGTTTTAGTTTAACAGTAACAAGCCATTTAAGATTCAGGCTGGCATGGTTTCA
 
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rJMSF042D04-          TCTCCACTGATCTGATCGTTCTAATGTACTGAAAATTCTTCTGAATATCAAACTTCTTCT
rJMSF028L24-          TCTCCACTGATCTGATCGTTCTAATGTACTGAAAATTCTTCTGAATATCAAACTTCTTCT
                      ____________________________________________________________
consensus             TCTCCACTGATCTGATCGTTCTAATGTACTGAAAATTCTTCTGAATATCAAACTTCTTCT
 
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rJMSF042D04-          CTTGAATATGACATTTTTATCATACTTTCAAGAACCTGTGCTGATAAAACTCTTTAAAGG
rJMSF028L24-          CTTGAATATGACATTTTTATCATACTTTCAAGAACCTGTGCTGATAAAACTCTTTAAAGG
                      ____________________________________________________________
consensus             CTTGAATATGACATTTTTATCATACTTTCAAGAACCTGTGCTGATAAAACTCTTTAAAGG
 
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rJMSF042D04-          ACAAGCGCTTCTCTGCCAGGCAGGGCAAGGACAAGGACAAGGACACACAGTAAGTGTAAG
rJMSF028L24-          ACAAGCGCTTCTCTGCCAGGCAGGGCAAGGACAAGGACAAGGACACACAGTAAGTGTAAG
                      ____________________________________________________________
consensus             ACAAGCGCTTCTCTGCCAGGCAGGGCAAGGACAAGGACAAGGACACACAGTAAGTGTAAG
 
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rJMSF042D04-          ATTCCAATTAAGGAATTAAGAGGGAGAGTGAATGCTAGCCTGGATCAATAGATAATAGTC
rJMSF028L24-          ATTCCAATTAAGGAATTAAGAGGGAGAGTGAATGCTAGCCTGGATCAATAGATAATAGTC
JMSF042D04+                                                  CTGGATCAATAGATAATAGTC
                      ____________________________________________________________
consensus             ATTCCAATTAAGGAATTAAGAGGGAGAGTGAATGCTAGCCTGGATCAATAGATAATAGTC
 
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rJMSF042D04-          TTGAACACAGATCAATGCAGTCAGGGTGCAATTCGGTAAGGATTAGCTCAGAGAAAGGAA
rJMSF028L24-          TTGAACACAGATCAATGCAGTCAGGGTGCAATTCGGTAAGGATTAGCTCAGAGAAAGGAA
JMSF042D04+           TTGAACACAGATCAATGCAGTCAGGGTGCAATTCGGTAAGGATTAGCTCAGAGAAAGGAA
                      ____________________________________________________________
consensus             TTGAACACAGATCAATGCAGTCAGGGTGCAATTCGGTAAGGATTAGCTCAGAGAAAGGAA
 
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rJMSF042D04-          GGCGTGTACATGACTTGATATTCTGCAAAAGCTGAACATTGGACCTGCCACAGAAAGGAG
rJMSF028L24-          GGCGTGTACATGACTTGATATTCTGCAAAAGCTGAACATTGGACCTGCCACAGAAAGGAG
JMSF028L24+                                                           CACAGAAAGGAG
JMSF042D04+           GGCGTGTACATGACTTGATATTCTGCAAAAGCTGAACATTGGACCTGCCACAGAAAGGAG
                      ____________________________________________________________
consensus             GGCGTGTACATGACTTGATATTCTGCAAAAGCTGAACATTGGACCTGCCACAGAAAGGAG
 
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rJMSF042D04-          GGTAACCATTAAGCAATTCAAAAAGAATTGCTCCAACACTCCACATATCTACCTATCAAG
rJMSF028L24-          GGTAACCATTAAGCAATTCAAAAAGAATTGCTCCAACACTCCACATATCTACCTATCAAG
JMSF028L24+           GGTAACCATTAAGCAATTCAAAAAGAATTGCTCCAACACTCCACATATCTACCTATCAAG
JMSF042D04+           GGTAACCATTAAGCAATTCAAAAAGAATTGCTCCAACACTCCACATATCTACCTATCAAG
                      ____________________________________________________________
consensus             GGTAACCATTAAGCAATTCAAAAAGAATTGCTCCAACACTCCACATATCTACCTATCAAG
 
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rJMSF042D04-          CTTTTCATTGTATCTTTGGAATTGTAAAACTTCAGGGGCCATGTAAAATGGAGTGCCACA
rJMSF028L24-          CTTTTCATTGTATCTTTGGAATTGTAAAACTTCAGGGGCCATGTAAAATGGAGTGCCACA
JMSF028L24+           CTTTTCATTGTATCTTTGGAATTGTAAAACTTCAGGGGCCATGTAAAATGGAGTGCCACA
JMSF042D04+           CTTTTCATTGTATCTTTGGAATTGTAAAACTTCAGGGGCCATGTAAAATGGAGTGCCACA
                      ____________________________________________________________
consensus             CTTTTCATTGTATCTTTGGAATTGTAAAACTTCAGGGGCCATGTAAAATGGAGTGCCACA
 
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rJMSF042D04-          AACAGTTTCTGCATACTCATCTGGATTTAATGTTCTTGACAAACCAAAATCAGCAATTTT
rJMSF028L24-          AACAGTTTCTGCATACTCATCTGGATTTAATGTTCTTGACAAACCAAAATCAGCAATTTT
JMSF028L24+           AACAGTTTCTGCATACTCATCTGGATTTAATGTTCTTGACAAACCAAAATCAGCAATTTT
JMSF042D04+           AACAGTTTCTGCATACTCATCTGGATTTAATGTTCTTGACAAACCAAAATCAGCAATTTT
                      ____________________________________________________________
consensus             AACAGTTTCTGCATACTCATCTGGATTTAATGTTCTTGACAAACCAAAATCAGCAATTTT
 
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rJMSF042D04-          CAGTACTGGGCCATTTTCACAGAAGGACAAGAGGATATTCTCTGGTTTCAAGTCACGATG
rJMSF028L24-          CAGTACTGGGCCATTTTCACAGAAGGACAAGAGGATATTCTCTGGTTTCAAGTCACGATG
JMSF028L24+           CAGTACTGGGCCATTTTCACAGAAGGACAAGAGGATATTCTCTGGTTTCAAGTCACGATG
JMSF042D04+           CAGTACTGGGCCATTTTCACAGAAGGACAAGAGGATATTCTCTGGTTTCAAGTCACGATG
                      ____________________________________________________________
consensus             CAGTACTGGGCCATTTTCACAGAAGGACAAGAGGATATTCTCTGGTTTCAAGTCACGATG
 
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rJMSF042D04-          GATGATTCGGTGAGAGTTGAGTAGCTGTAG                              
rJMSF028L24-          GATGATTCGGTGAGAGTTGAGTAGCTGTAGACCAGCTCCAAGCTGTTGGATAAATCCTTT
JMSF028L24+           GATGATTCGGTGAGAGTTGAGTAGCTGTAGACCAGCTCCAAGCTGTTGGATAAATCCTTT
JMSF042D04+           GATGATTCGGTGAGAGTTGAGTAGCTGTAGACCAGCTCCAAGCTGTTGGATAAATCCTTT
                      ____________________________________________________________
consensus             GATGATTCGGTGAGAGTTGAGTAGCTGTAGACCAGCTCCAAGCTGTTGGATAAATCCTTT
 
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rJMSF028L24-          TGCTACACATTGTTGAACTC                                        
JMSF028L24+           TGCTACACATTGTTGAACTCTCCCATGGTGGTGAATGTATGATGCCAAATTCCCTCCATC
JMSF042D04+           TGCTACACATTGTTGAACTCTCCCATGGTGGTGAATGTATGATGCCAAATTCCCTCCATC
                      ____________________________________________________________
consensus             TGCTACACATTGTTGAACTCTCCCATGGTGGTGAATGTATGATGCCAAATTCCCTCCATC
 
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JMSF028L24+           ACAGAACTCCAATACCATAACAACACAGTCCTCAGCCTGGAAGAAATGGAAAAGGCGAAT
JMSF042D04+           ACAGAACTCCAATACCATAACAACACAGTCCTCAGCCTGGAAGAAATGGAAAAGGCGAAT
                      ____________________________________________________________
consensus             ACAGAACTCCAATACCATAACAACACAGTCCTCAGCCTGGAAGAAATGGAAAAGGCGAAT
 
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JMSF028L24+           GATGTTTGGATGATTTACAGAGGACAAGAAGGTGAGAGAAGAGTGAAGAGAATTGTTAAG
JMSF042D04+           GATGTTTGGATGATTTACAGAGGACAAGAAGGTGAGAGAAGAGTGAAGAGAATTGTTAAG
                      ____________________________________________________________
consensus             GATGTTTGGATGATTTACAGAGGACAAGAAGGTGAGAGAAGAGTGAAGAGAATTGTTAAG
 
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JMSF028L24+           GTGGGGAGTGAGGTTGGAGAGGCGGATTTGCTTCAGCGCCACCACTTGGCCGCTCCTTTT
JMSF042D04+           GTGGGGAGTGAGGTTGGAGAGGCGGATTTGCTTCAGCGCCACCACTTGGCCGCTCCTTTT
                      ____________________________________________________________
consensus             GTGGGGAGTGAGGTTGGAGAGGCGGATTTGCTTCAGCGCCACCACTTGGCCGCTCCTTTT
 
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JMSF028L24+           GTGCTCTGCTTTCCACACTTGCGATACAGCTCCGCCGCCCAGTCGACACAAAATTGCGTA
JMSF042D04+           GTGCTCTGCTTTCCACACTTGCGATACAGCTCCGCCGCCCAGTCGACACAAAATTGCGTA
                      ____________________________________________________________
consensus             GTGCTCTGCTTTCCACACTTGCGATACAGCTCCGCCGCCCAGTCGACACAAAATTGCGTA
 
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JMSF028L24+           CTCTCCGATGCTTCCAACCTCCGACTCTTCCATTACTATACACTGCTTCAACATAATCGC
JMSF042D04+           CTCTCCGATGCTTCCAACCTCCGACTCTTCCATTACTATACACTGCTTCAACATAATCGC
                      ____________________________________________________________
consensus             CTCTCCGATGCTTCCAACCTCCGACTCTTCCATTACTATACACTGCTTCAACATAATCGC