clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS109F03 | Sequence | 627 | 012134 (3) | ref|XP_009601294.1| | 8e-38 | PREDICTED: uncharacterized protein LOC104096614 isoform X3 [Nicotiana tomentosi | |||||
JMSF012L11 | Sequence | 491 | 012134 (3) | ref|XP_009601294.1| | 2e-28 | PREDICTED: uncharacterized protein LOC104096614 isoform X3 [Nicotiana tomentosi | 740 | 004361 (2) | ref|XP_006360715.1| | 283 | PREDICTED: uncharacterized protein LOC102580131 [Solanum tuberosum] |
JMSF042A14 | Sequence | 459 | 012134 (3) | ref|XP_009601294.1| | 8e-06 | PREDICTED: uncharacterized protein LOC104096614 isoform X3 [Nicotiana tomentosi | 654 | 004361 (2) | ref|XP_010053139.1| | 117 | PREDICTED: uncharacterized protein LOC104441662 [Eucalyptus grandis] gb|KCW77397 |
This contig is upended
. : . : . : . : . : . :
JMSF012L11+ TCAAAGGACAGACCT
JMFS109F03+ ATATTGTGTAGGTATTCACATCCGGCCTTGACCACTTCCATTTCTCAAAGGACAGACCT
____________________________________________________________
consensus ATATTGTGTAGGTATTCACATCCGGCCTTGACCACTTCCATTTCTCAAAGGACAGACCT
. : . : . : . : . : . :
JMSF012L11+ TTCTGATTAACATCAGGATCAAAGGAGGAGCGCATAGCTTGGAAAACAGAGAGAGCCAAG
JMFS109F03+ TTCTGATTAACATCAGGATCAAAGGAGGAGCGCATAGCTTGGAAAACAGAGAGAGCCAAG
____________________________________________________________
consensus TTCTGATTAACATCAGGATCAAAGGAGGAGCGCATAGCTTGGAAAACAGAGAGAGCCAAG
. : . : . : . : . : . :
JMSF012L11+ TCAGCATTGCTACGATCAAGCGCGGCAGATATGATCAAGGAGCAATCGGAAGAGCTTACG
JMFS109F03+ TCAGCATTGCTACGATCAAGCGCGGCAGATATGATCAAGGAGCAATCGGAAGAGCTTACG
____________________________________________________________
consensus TCAGCATTGCTACGATCAAGCGCGGCAGATATGATCAAGGAGCAATCGGAAGAGCTTACG
. : . : . : . : . : . :
JMSF012L11+ GTGCCGCCGCTCCTCAGAGTCGACTCCGCAATGATGTTGAGAACTTCGTTGGCATCCGCG
JMFS109F03+ GTGCCGCCGCTCCTCAGAGTCGACTCCGCAATGATGTTGAGAACTTCGTTGGCATCCGCG
JMSF042A14+ GACTCCGCAATGATGTTGAGAACTTCGTTGGCATCCGCG
____________________________________________________________
consensus GTGCCGCCGCTCCTCAGAGTCGACTCCGCAATGATGTTGAGAACTTCGTTGGCATCCGCG
. : . : . : . : . : . :
JMSF012L11+ GCGGTGGAGACTCGGCGTAGCAATTCGTCGTCCAACAGCCGCGACGCCTCACTGTCATTA
JMFS109F03+ GCGGTGGAGACTCGGCGTAGCAATTCGTCGTCCAACAGCCGCGACGCCTCACTGTCATTA
JMSF042A14+ GCGGTGGAGACTCGGCGTAGCAATTCGTCGTCCAACAGCCGCGACGCCTCACTGTCATTA
____________________________________________________________
consensus GCGGTGGAGACTCGGCGTAGCAATTCGTCGTCCAACAGCCGCGACGCCTCACTGTCATTA
. : . : . : . : . : . :
JMSF012L11+ GCCGCCTCACTCAAAGCAGCTCTGGTCTTAAAGCTGCAAAAACTGTTGCGAGAACAGCAG
JMFS109F03+ GCCGCCTCACTCAAAGCAGCTCTGGTCTTAAAGCTGCAAAAACTGTTGCGAGAACAGCAG
JMSF042A14+ GCCGCCTCACTCAAAGCAGCTCTGGTCTTAAAGCTGCAAAAACTGTTGCGAGAACAGCAG
____________________________________________________________
consensus GCCGCCTCACTCAAAGCAGCTCTGGTCTTAAAGCTGCAAAAACTGTTGCGAGAACAGCAG
. : . : . : . : . : . :
JMSF012L11+ GATAACGCACGGTTACCGGGAAGGCGGCGGCGGAAGAAGAGATAGAAGAGAGCACCGGTG
JMFS109F03+ GATAACGCACGGTTACCGGGAAGGCGGCGGCGGAAGAAGAGATAGAAGAGAGCACCGGTG
JMSF042A14+ GATAACGCACGGTTACCGGGAAGGCGGCGGCGGAAGAAGAGATAGAAGAGAGCACCGGTG
____________________________________________________________
consensus GATAACGCACGGTTACCGGGAAGGCGGCGGCGGAAGAAGAGATAGAAGAGAGCACCGGTG
. : . : . : . : . : . :
JMSF012L11+ CCTGTGACGGAGAATCTCTGAGGGAAACAGGAGAGACAAGCAGGGGAGCTCAACTTGATA
JMFS109F03+ CCTGTGACGGAGAATCTCTGAGGGAAACAGGAGAGACAAGCAGGGGAGCTCAACTTGATA
JMSF042A14+ CCTGTGACGGAGAATCTCTGAGGGAAACAGGAGAGACAAGCAGGGGAGCTCAACTTGATA
____________________________________________________________
consensus CCTGTGACGGAGAATCTCTGAGGGAAACAGGAGAGACAAGCAGGGGAGCTCAACTTGATA
. : . : . : . : . : . :
JMSF012L11+ CTCATATGTAATGTAACGTCTTGAATATTAGCATACAATACAGTAATCAACCACT
JMFS109F03+ CTCATATGTAATGTAACGTCTTGAATATTAGCATACAATACAGTAATCAACCACTGCAAA
JMSF042A14+ CTCATATGTAATGTAACGTCTTGAATATTAGCATACAATACAGTAATCAACCACTGCAAA
____________________________________________________________
consensus CTCATATGTAATGTAACGTCTTGAATATTAGCATACAATACAGTAATCAACCACTGCAAA
. : . : . : . : . : . :
JMFS109F03+ TTTTATAATTTTTTTTGTTGAAAAATGGGGATAGAAGCAGTTGGGAGAGGGTGATTCTGT
JMSF042A14+ TTTTATAATTTTTTTTGTTGAAAAATGGGGATAGAAGCAGTTGGGAGAGGGTGATTCTGT
____________________________________________________________
consensus TTTTATAATTTTTTTTGTTGAAAAATGGGGATAGAAGCAGTTGGGAGAGGGTGATTCTGT
. : . : . : . : . : . :
JMFS109F03+ GTTTGTGTAAGGGAGGGAGGGTTTCTTA
JMSF042A14+ GTTTGTGTAAGGGAGGGAGGGTTTCTTACAGATTAGGAACGAGAGGTGGCTGTTGGTACC
____________________________________________________________
consensus GTTTGTGTAAGGGAGGGAGGGTTTCTTACAGATTAGGAACGAGAGGTGGCTGTTGGTACC