Contig 012132:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027F07Sequence327012132 (3)ref|XP_009621480.1|2e-22PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Nicotiana tomentosiform768009709 (3)ref|XP_009621480.1|8e-54PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Nicotiana tomentosiform
JMSF041N01Sequence750012132 (3)ref|XP_006341036.1|3e-116PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like [Solanum tuberosum]671009709 (3)ref|XP_009621480.1|9e-43PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Nicotiana tomentosiform
JMSF043I15Sequence780012132 (3)ref|XP_006341036.1|5e-125PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like [Solanum tuberosum]690009709 (3)ref|XP_009621480.1|2e-48PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Nicotiana tomentosiform

Alignment

This contig is upended


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JMSF043I15+                                                                  CCCCA
                      ____________________________________________________________
consensus                                                                    CCCCA
 
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JMSF043I15+           AGCAAGTAATTCTCGAACACAGTCCAAGGAACCTGCCCGAGCTGCCAAATGAAGAGGCGT
JMSF041N01+                                         ACCTGCCCGAGCTGCCAAATGAAGAGGCGT
                      ____________________________________________________________
consensus             AGCAAGTAATTCTCGAACACAGTCCAAGGAACCTGCCCGAGCTGCCAAATGAAGAGGCGT
 
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JMSF043I15+           GCATCCTGGGTAGCCATATCCACCGGTTGAAGCACACACAAGAGCTTCGTTGCTTAGCAA
JMSF041N01+           GCATCCTGGGTAGCCATATCCACCGGTTGAAGCACACACAAGAGCTTCGTTGCTTAGCAA
                      ____________________________________________________________
consensus             GCATCCTGGGTAGCCATATCCACCGGTTGAAGCACACACAAGAGCTTCGTTGCTTAGCAA
 
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JMSF043I15+           AAGACGAACACATTCTGGCCTTCTGTGTCGGGCTGCTAAGTGCAGGGAGGTTGCACCACT
JMSF041N01+           AAGACGAACACATTCTGGCCTTCTGTGTCGGGCTGCTAAGTGCAGGGAGGTTGCACCACT
                      ____________________________________________________________
consensus             AAGACGAACACATTCTGGCCTTCTGTGTCGGGCTGCTAAGTGCAGGGAGGTTGCACCACT
 
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JMSF043I15+           TCCATCCCTCGTGTTGACATATCGTGCAAATCCCCAGGATTGTGCCACGTGGGCAGAATG
JMSF041N01+           TCCATCCCTCGTGTTGACATATCGTGCAAATCCCCAGGATTGTGCCACGTGGGCAGAATG
                      ____________________________________________________________
consensus             TCCATCCCTCGTGTTGACATATCGTGCAAATCCCCAGGATTGTGCCACGTGGGCAGAATG
 
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JMSF043I15+           TGCAGCAGAGAGGATAGATTGCAGGCAATCAGAGTGGCCATAGTATGCAGCATAATGCAA
JMSF041N01+           TGCAGCAGAGAGGATAGATTGCAGGCAATCAGAGTGGCCATAGTATGCAGCATAATGCAA
                      ____________________________________________________________
consensus             TGCAGCAGAGAGGATAGATTGCAGGCAATCAGAGTGGCCATAGTATGCAGCATAATGCAA
 
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JMSF043I15+           ACAGGTTCTTCCATGTAGTGAATCAAACATTAAAATATTTGCTCCTGCCTGGAGTAGCCT
JMSF041N01+           ACAGGTTCTTCCATGTAGTGAATCAAACATTAAAATATTTGCTCCTGCCTGGAGTAGCCT
                      ____________________________________________________________
consensus             ACAGGTTCTTCCATGTAGTGAATCAAACATTAAAATATTTGCTCCTGCCTGGAGTAGCCT
 
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JMSF043I15+           TTCCACACAGGAAAGCTTTCCATGAATAGCAGCTAGCATCAATGGGGTCTGTTTGTGGCG
JMSF041N01+           TTCCACACAGGAAAGCTTTCCATGAATAGCAGCTAGCATCAATGGGGTCTGTTTGTGGCG
                      ____________________________________________________________
consensus             TTCCACACAGGAAAGCTTTCCATGAATAGCAGCTAGCATCAATGGGGTCTGTTTGTGGCG
 
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JMSF043I15+           ATTCAAGATGTCTGGATTTAAACCCTTATCCAAAAGCATACAGAGAATCTCGATCTGCCC
JMFF027F07+                                         CAAAAGCATACAGAGAATCTCGATNTGCCC
JMSF041N01+           ATTCAAGATGTCTGGATTTAAACCCTTATCCAAAAGCATACAGAGAATCTCGATCTGCCC
                      ____________________________________________________________
consensus             ATTCAAGATGTCTGGATTTAAACCCTTATCCAAAAGCATACAGAGAATCTCGATCTGCCC
 
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JMSF043I15+           ATTGGCTGCTGCCACATGCAATGCAGAGAGCTTCCCATGAACAGCGGTGAACCTTAGCAC
JMFF027F07+           ATTGGCTGNTGCCACATGCAATGCAGAGAGCTTCCCATGAACAGCGGTGAACCTTAGCAC
JMSF041N01+           ATTGGCTGCTGCCACATGCAATGCAGAGAGCTTCCCATGAACAGCGGTGAACCTTAGCAC
                      ____________________________________________________________
consensus             ATTGGCTGCTGCCACATGCAATGCAGAGAGCTTCCCATGAACAGCGGTGAACCTTAGCAC
 
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JMSF043I15+           ACTCGGGTCCTCATCAACCATGGCCTCAACTGTTTCAAGCTCCCCATTTTGGACGGCTGT
JMFF027F07+           ACTCGGGTCCTCATCAACCATGGCCTCAACTGTTTCAAGCTCCCCATTTTGGACGGCTGT
JMSF041N01+           ACTCGGGTCCTCATCAACCATGGCCTCAACTGTTTCAAGCTCCCCATTTTGGACGGCTGT
                      ____________________________________________________________
consensus             ACTCGGGTCCTCATCAACCATGGCCTCAACTGTTTCAAGCTCCCCATTTTGGACGGCTGT
 
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JMSF043I15+           GAAGAACCCATGTTCATGGGTTTCTCTGCAGCTCAATCTCTGCCCCATCGCCGCCAAAGC
JMFF027F07+           GAAGAACCCATGTTCATGGGTTTCTCTGCAGCTCAATCTCTGCCCCATCGCCGCCAAAGC
JMSF041N01+           GAAGAACCCATGTTCATGGGTTTCTCTGCAGCTCAATCTCTGCCCCATCGCCGCCAAAGC
                      ____________________________________________________________
consensus             GAAGAACCCATGTTCATGGGTTTCTCTGCAGCTCAATCTCTGCCCCATCGCCGCCAAAGC
 
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JMSF043I15+           CTTCAGCTCACAGCATTTAGGTGAAGTGCTGAGATGATTTCTTGACGCGCCACCCGGCAG
JMFF027F07+           CTTCAGCTCACAGCATTTAGGTGAAGTGCTGAGATGATTTCTTGACGCGCCACCCGGCAG
JMSF041N01+           CTTCAGCTCACAGCATTTAGGTGAAGTGCTGAGATGATTTCTTGACGCGCCACCCGGCAG
                      ____________________________________________________________
consensus             CTTCAGCTCACAGCATTTAGGTGAAGTGCTGAGATGATTTCTTGACGCGCCACCCGGCAG
 
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JMSF043I15+           GGCGGAGGGAGCGGCAATGGGATGGTGGTGCAGAGA                        
JMFF027F07+           GGCGGAGGGAGCGGCAATGGGATGGTGGTGCAGAGA                        
JMSF041N01+           GGCGGAGGGAGCGGCAATGGGATGGTGGTGCAGAGAGTGGATGATGGGGGGTTGGGAACC
                      ____________________________________________________________
consensus             GGCGGAGGGAGCGGCAATGGGATGGTGGTGCAGAGAGTGGATGATGGGGGGTTGGGAACC