Contig 012129:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011B11Sequence497012129 (3)ref|XP_004244756.2|2e-13PREDICTED: transcription factor bHLH113 [Solanum lycopersicum] ref|XP_010324698.
JMSF041K03Sequence747012129 (3)ref|XP_006355783.1|6e-47PREDICTED: transcription factor bHLH113-like isoform X1 [Solanum tuberosum] ref682012129 (3)ref|XP_004244756.2|4e-63PREDICTED: transcription factor bHLH113 [Solanum lycopersicum] ref|XP_010324698.

Alignment

This contig is upended


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JMFN011B11+                                           GGTGCCAGATGAGAACTGATCTATTGAA
                      ____________________________________________________________
consensus                                             GGTGCCAGATGAGAACTGATCTATTGAA
 
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JMFN011B11+           TAAGAGAAGGGTTTTCCACATTCTCAGAAACTTAATTATATGGAATACAACATTGATGGC
rJMSF041K03-                                                 ATGGAATACAACATTGANGGC
                      ____________________________________________________________
consensus             TAAGAGAAGGGTTTTCCACATTCTCAGAAACTTAATTATATGGAATACAACATTGATGGC
 
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JMFN011B11+           GGGTGAGTTCCTACAGAGATCATTAATTATACATCTCTTCATTCATGCATATACATTTCA
rJMSF041K03-          GGGTGAGTTCCTAGAGAGATCATTAATTATACATCTCTTCATTCATGCATATACATTTCA
                      ____________________________________________________________
consensus             GGGTGAGTTCCTAGAGAGATCATTAATTATACATCTCTTCATTCATGCATATACATTTCA
 
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JMFN011B11+           GTTAAACCTGGACAATTAAGAACTAGGATCTATAACTAGCTAAATGATTTACCAAAATAA
rJMSF041K03-          GTTAAACCTGGACAATTAAGAACTAGGATCTATAACTAGCTAAATGATTTACCAAAATAA
                      ____________________________________________________________
consensus             GTTAAACCTGGACAATTAAGAACTAGGATCTATAACTAGCTAAATGATTTACCAAAATAA
 
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JMFN011B11+           ATCAGCCTCCAGGTTTTGCTGTTAGACATTCGAACCCGAATTCACAACAAACTTCTGGCA
rJMSF041K03-          ATCAGCCTCCAGGTTTTGCTGTTAGACATTCGAACCCGAATTCACAACAAACTTCTGGCA
                      ____________________________________________________________
consensus             ATCAGCCTCCAGGTTTTGCTGTTAGACATTCGAACCCGAATTCACAACAAACTTCTGGCA
 
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JMFN011B11+           TCCGAGGACGAGGTTTTACCATCCCAGTCTGCAATCTATCTATCACATTCACCGCATTTA
rJMSF041K03-          TCCGAGGACGAGGTTTTACCATCCCAGTCTGCAATCTATCTATCACATTCACCGCATTTA
                      ____________________________________________________________
consensus             TCCGAGGACGAGGTTTTACCATCCCAGTCTGCAATCTATCTATCACATTCACCGCATTTA
 
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JMFN011B11+           TTTGGTCGTCTTGATTCTTGAATCAGACTCGAGAGCGAGGTTCTAGAACTTCGGGAGAGT
rJMSF041K03-          TTTGGTCGTCTTGATTCTTGAATCAGACTCGAGAGCGAGGTTCTAGAACTTCGGGAGAGT
                      ____________________________________________________________
consensus             TTTGGTCGTCTTGATTCTTGAATCAGACTCGAGAGCGAGGTTCTAGAACTTCGGGAGAGT
 
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JMFN011B11+           CTTAACAGGGGCCCAGATATCTGCGCCATTGCTACTAGGTACTCCTTCGGTGTATGATAT
rJMSF041K03-          CTTAACAGGGGCCCAGATATCTGCGCCATTGCTACTAGGTACTCCTTCGGTGTATGATAT
                      ____________________________________________________________
consensus             CTTAACAGGGGCCCAGATATCTGCGCCATTGCTACTAGGTACTCCTTCGGTGTATGATAT
 
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JMFN011B11+           GGGCACGAGGCATAAGCCCTTACTTCTCAAATTGTAGGGGTGCGGTTCC           
rJMSF041K03-          GGGCACGAGGCATAAGCCCTTACTTCTCAAATTGTAGGGGTGCGGTTCCTGTGTATTAGA
JMSF041K03+                                            GTAGGGGTGCGGTTCCTGTGTATTAGA
                      ____________________________________________________________
consensus             GGGCACGAGGCATAAGCCCTTACTTCTCAAATTGTAGGGGTGCGGTTCCTGTGTATTAGA
 
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rJMSF041K03-          CACGGGAGTAGGATGGAGATACGGAGCACTCAACACCTTAACTTGTTCGTGGAGGAAGTT
JMSF041K03+           CACGGGAGTAGGATGGAGATACGGAGCACTCAACACCTTAACTTGTTCGTGGAGGAAGTT
                      ____________________________________________________________
consensus             CACGGGAGTAGGATGGAGATACGGAGCACTCAACACCTTAACTTGTTCGTGGAGGAAGTT
 
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rJMSF041K03-          TATGTACCCCATTGCTTCATGAAGAACTGAGGCTGTGTCTGTCTTTCCAAATGGTGATAC
JMSF041K03+           TATGTACCCCATTGCTTCATGAAGAACTGAGGCTGTGTCTGTCTTTCCAAATGGTGATAC
                      ____________________________________________________________
consensus             TATGTACCCCATTGCTTCATGAAGAACTGAGGCTGTGTCTGTCTTTCCAAATGGTGATAC
 
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rJMSF041K03-          AAGCTGCTGCAGAGCTGCAATACGTTCACCAAACTTCTCTTTCTTTTCCTTGGAAGAAAT
JMSF041K03+           AAGCTGCTGCAGAGCTGCAATACGTTCACCAAACTTCTCTTTCTTTTCCTTGGAAGAAAT
                      ____________________________________________________________
consensus             AAGCTGCTGCAGAGCTGCAATACGTTCACCAAACTTCTCTTTCTTTTCCTTGGAAGAAAT
 
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rJMSF041K03-          AGGCATATCGGCCTTGAGCCGTTTANGTGTCAAAGACGTCATGCTACTGTGG        
JMSF041K03+           AGGCATATCGGCCTTGAGCCGTTTAGGTGTCAAAGACGTCATGCTACTGTGGTCAAGAGA
                      ____________________________________________________________
consensus             AGGCATATCGGCCTTGAGCCGTTTAGGTGTCAAAGACGTCATGCTACTGTGGTCAAGAGA
 
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JMSF041K03+           GACGGGACCCCTTTTGTGTTCCATCATTTTTTGTTTGAATGCTTCCACTCACACCAATTC
                      ____________________________________________________________
consensus             GACGGGACCCCTTTTGTGTTCCATCATTTTTTGTTTGAATGCTTCCACTCACACCAATTC
 
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JMSF041K03+           TAACCATGCAAGATCAGAATCTTCAGAGCTCACTCTGAAACTCAACGGGCTGAAAAATCC
                      ____________________________________________________________
consensus             TAACCATGCAAGATCAGAATCTTCAGAGCTCACTCTGAAACTCAACGGGCTGAAAAATCC
 
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JMSF041K03+           TCTATCTCTGCACAAAATCTCTTACTACTTTGCCTAGGGCACAAAAGCGCCTTATTAGCT
                      ____________________________________________________________
consensus             TCTATCTCTGCACAAAATCTCTTACTACTTTGCCTAGGGCACAAAAGCGCCTTATTAGCT
 
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JMSF041K03+           TGGGGGCTTGTGGCGGTTCACTGAAAACACAACAGTCGAAAAGAAAGTTTCAATCTTTTT
                      ____________________________________________________________
consensus             TGGGGGCTTGTGGCGGTTCACTGAAAACACAACAGTCGAAAAGAAAGTTTCAATCTTTTT
 
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JMSF041K03+           AACTTTTCCTCTCTCTCTCTCTCTCAACGTCTATGTTCACACGGAATTTTGCTGTTTTCA
                      ____________________________________________________________
consensus             AACTTTTCCTCTCTCTCTCTCTCTCAACGTCTATGTTCACACGGAATTTTGCTGTTTTCA
 
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JMSF041K03+           AAGCGGTGATCGTGTGTGAGAACTTTAACCCCCCAAAAGCAGACGTTTATGAAATGCGTC
                      ____________________________________________________________
consensus             AAGCGGTGATCGTGTGTGAGAACTTTAACCCCCCAAAAGCAGACGTTTATGAAATGCGTC
 
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JMSF041K03+           TGGTCGGAGAAAGGCCGGAAAAGGGTGCCGGTGGATCGCCGGAGACGATTAGACAGGGCT
                      ____________________________________________________________
consensus             TGGTCGGAGAAAGGCCGGAAAAGGGTGCCGGTGGATCGCCGGAGACGATTAGACAGGGCT
 
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JMSF041K03+           GAGAGTCTAGTACTCTGGACTCTGCAAGAAGGTGAAAGACAGAGGGAAGAGAACAGGGCC
                      ____________________________________________________________
consensus             GAGAGTCTAGTACTCTGGACTCTGCAAGAAGGTGAAAGACAGAGGGAAGAGAACAGGGCC