Contig 012124:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036M21Sequence580012124 (5)
JMFN029F05Sequence612012124 (5)
JMFN029H06Sequence505012124 (5)
JMSF041C05Sequence767012124 (5)658012124 (5)ref|XP_009618655.1|2e-06PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to

Alignment

This contig is upended


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rJMSF041C05-          CTTCGGTATACTTATCTTCCATGGAAGGAGATGGACACAATTGGCAAGTTGCCGCACCTT
                      ____________________________________________________________
consensus             CTTCGGTATACTTATCTTCCATGGAAGGAGATGGACACAATTGGCAAGTTGCCGCACCTT
 
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rJMSF041C05-          GAGGTGCTTAAACTAAAAGATTTCGCCTGCTATGGTTCCAAGTGGGAACCAACGAAGATA
                      ____________________________________________________________
consensus             GAGGTGCTTAAACTAAAAGATTTCGCCTGCTATGGTTCCAAGTGGGAACCAACGAAGATA
 
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rJMSF041C05-          AGGTTAAAAAAAAAAGATAATAACACAGTAAAATTAAAGAAATGCAAAAAGAAAAATATT
JMSF041C05+                AAAAAAAAAAGATAATAACACAGTAAAATTAAAGAAATGCAAAAAGAAAAATATT
                      ____________________________________________________________
consensus             AGGTTAAAAAAAAAAGATAATAACACAGTAAAATTAAAGAAATGCAAAAAGAAAAATATT
 
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rJMSF041C05-          TTTTAAAAAATGCACTGTGAATAGTCTTCTTCTGCTTCGTCTCTTCTTCGCTTGCTTCAT
JMSF041C05+           TTTTAAAAAATGCACTGTGAATAGTCTTCTTCTGCTTCGTCTCTTCTTCGCTTGCTTCAT
                      ____________________________________________________________
consensus             TTTTAAAAAATGCACTGTGAATAGTCTTCTTCTGCTTCGTCTCTTCTTCGCTTGCTTCAT
 
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rJMSF041C05-          CATCTACAGCTTCGCGATGCACAGAGAGCTTTGACTCTTCGACTCTTCTTCTGCTTCGTC
JMSF041C05+           CATCTACAGCTTCGCGATGCACAGAGAGCTTTGACTCTTCGACTCTTCTTCTGCTTCGTC
                      ____________________________________________________________
consensus             CATCTACAGCTTCGCGATGCACAGAGAGCTTTGACTCTTCGACTCTTCTTCTGCTTCGTC
 
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rJMSF041C05-          TCTTCCTCGCTTGCTTCACCATCTACGGCTTCGCGATGCGCANAGGGCTTTGGCTCTTCA
JMFF036M21+                          TCACCGTCTACGGCTTCGCGATGCGCAGAGGGCTTTGGCTCTTCG
JMFN029H06+                                      GCTTCGCGATGTACAGAAGGCTTTGGCTTTTCG
JMSF041C05+           TCTTCCTCGCTTGCTTCACCATCTACGGCTTCGCGATGCGCAGAGGGCTTTGGCTCTTCA
                      ____________________________________________________________
consensus             TCTTCCTCGCTTGCTTCACCATCTACGGCTTCGCGATGCGCAGAGGGCTTTGGCTCTTCA
 
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rJMSF041C05-          ACTACCAAGCGGCGGTGGCCTCCGAGATCTCCAGATCTGAAGAAAAAAAGGGG-TGATGG
JMFN029F05+                                    GATCTCCAGATCTGAAGAAAAAAAGGGG-TGATGG
JMFF036M21+           ACTACCAAGCAGCGGTGGCCTCTGGGATCTCCAGATCTGAAGAAAAAAAGGGG-TGATGG
JMFN029H06+           ACTACCAAGCAGCGGTGGCCTCCGGGATTTCCAGATCTGAAGAAAAAAAGGGGATGATGG
JMSF041C05+           ACTACCAAGCGGCGGTGGCCTCCGAGATCTCCAGATCTGAAGAAAAAAAGGGG-TGATGG
                      ____________________________________________________________
consensus             ACTACCAAGCGGCGGTGGCCTCCGAGATCTCCAGATCTGAAGAAAAAAAGGGG-TGATGG
 
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rJMSF041C05-          TGGCGGTTCCGGATGTTGGTGGTGGTGGTGGTGGGAGGAGANAANAATCGACAGCTTTTT
JMFN029F05+           TGGCGGTTCCGGATGTTGGTGGTGGTGGTGGTGGGAGGAGAGAAGAATCGACAGCTTTTT
JMFF036M21+           TGGCGGTTCCGGATGTTGGTGGTGGTGCCGGTGAGAAGAGAGAAGAGTCGACAGCTTTTT
JMFN029H06+           TGGCGGTTCCGGATGTTGGTGGTGGTGCCGGTGAGAAGAGAGAAGTGTTGACAGCTTTGT
JMSF041C05+           TGGCGGTTCCGGATGTTGGTGGTGGTGGTGGTGGGAGGAGAGAAGAATCGACAGCTTTTT
                      ____________________________________________________________
consensus             TGGCGGTTCCGGATGTTGGTGGTGGTGGTGGTGGGAGGAGAGAAGAATCGACAGCTTTTT
 
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rJMSF041C05-          GAGAGCTTTATTACCAGATCTATGCCGTCGAAACCATTCCCTCACAATCTGAACGACGAA
JMFN029F05+           GAGAGCTTTATTACCAGATCTATGCCGTCGAAACCATTCCCTCACAATCTGAACGACGAA
JMFF036M21+           GAGAGCTTTATTACCAGATCTATGCCGGCGAAACCATTCCCTCACGATCTGAACGGCGAA
JMFN029H06+           GAGACCCTTATTACTAGATGTATGCCATCGAAACCATTCCCTCACGATTTGAACGGCTAA
JMSF041C05+           GAGAGCTTTATTACCAGATCTATGCCGTCGAAACCATTCCCTCACAATCTGAACGACGAA
                      ____________________________________________________________
consensus             GAGAGCTTTATTACCAGATCTATGCCGTCGAAACCATTCCCTCACAATCTGAACGACGAA
 
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rJMSF041C05-          CGACAAAGGAGCAGTGCGACCAAGCTGATAAA                            
JMFN029F05+           CGACAAAGGAGCAGTGCGACCAAGCTGATAAAC-------CGTTGTCGTCGTCACCGTTG
JMFF036M21+           CGACAAAGGAGCCGTGCGACCAAGCTGATAAA--------GGACCCGTGCGTCACTGTCG
JMFN029H06+           TGACAAAGAAGCCGTGCGACCAAGCTATAAATCTGGTTGTCGAAGTCGTCGTCACAATCG
JMSF041C05+           CGACAAAGGAGCAGTGCGACCAAGCTGATAAAC-------CGTTGTCGTCGTCACCGTTG
                      ____________________________________________________________
consensus             CGACAAAGGAGCAGTGCGACCAAGCTGATAAAC-------CGTTGTCGTCGTCACCGTTG
 
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JMFN029F05+           CCAACAAGTCGTCGCCGTCGAAGCACTACCCGCCACCAACAAGCGTCGTCGTGAGGCCGC
JMFF036M21+           CCAACAAGTCGCCGCCGTCGAAGCACTACCCGCCACCAACAAGCGTCGTCGTGAGGCCAC
JMFN029H06+           CCAACAAGTCGCCGCCGTCGAAGCACTACCCCCCACCAACAAGCGTCGTCGTGAGGCCAC
JMSF041C05+           CCAACAAGTCGTCGCCGTCGAAGCACTACCCGCCACCAACAAGCGTCGTCGTGAGGCCGC
                      ____________________________________________________________
consensus             CCAACAAGTCGTCGCCGTCGAAGCACTACCCGCCACCAACAAGCGTCGTCGTGAGGCCGC
 
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JMFN029F05+           TGTCGAAGCGCTACCCGATGGTGTCTCGTTAGAAGCAGAAAGGAGAAGATTTAAAGGTTC
JMFF036M21+           CGTAGAAGCACTACCCGATGGTGTCTCGTTAGAAGTAGAAAGGAGAAGATTTAAAGGTTC
JMFN029H06+           CGTCGAAGCACTACCCGATGGTGTCTCATTAGAAGCAGAGAGGAGAAGATTTAAAGGTTC
JMSF041C05+           TGTCGAAGCGCTACCCGATGGTGTCTCGTTAGAAGCAGAAAGGAGAAGATTTAAAGGTTC
                      ____________________________________________________________
consensus             TGTCGAAGCGCTACCCGATGGTGTCTCGTTAGAAGCAGAAAGGAGAAGATTTAAAGGTTC
 
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JMFN029F05+           GCCGGTTGATATGATAGATCTGAAGAGAGCAGAAAGGAGAAGATTTAAAGGTTCGCCGGT
JMFF036M21+           G                                                           
JMFN029H06+           GCCGGTTGA                                                   
JMSF041C05+           GCCGGTTGATATGATAGATCTGAAGAGAGCAGAAAGGAGAAGATTTAAAGGTTCGCCGGT
                      ____________________________________________________________
consensus             GCCGGTTGATATGATAGATCTGAAGAGAGCAGAAAGGAGAAGATTTAAAGGTTCGCCGGT
 
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JMFN029F05+           TGATATGATAGATCTGAAGAGAAGAGAAGAGAAGATTTGTATGTTTTGGTGTATTTGGTT
JMSF041C05+           TGATATGATAGATCTGAAGAGAAGAGAAGAGAAGATTTGTATGTTTTGGTGTATTTGGTT
                      ____________________________________________________________
consensus             TGATATGATAGATCTGAAGAGAAGAGAAGAGAAGATTTGTATGTTTTGGTGTATTTGGTT
 
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JMFN029F05+           GAGATGAAAAGAGGA                                             
JMSF041C05+           GAGATGAAAAGAGGAGATCTGATAGATTTGAATGGCCTTAATTAGTAGATCTGAACTCTC
                      ____________________________________________________________
consensus             GAGATGAAAAGAGGAGATCTGATAGATTTGAATGGCCTTAATTAGTAGATCTGAACTCTC