Contig 012121:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN030J14Sequence541012121 (6)ref|XP_009604116.1|2e-69PREDICTED: ferredoxin, root R-B1-like [Nicotiana tomentosiformis]
JMFN033I07Sequence630012121 (6)ref|XP_009604116.1|7e-69PREDICTED: ferredoxin, root R-B1-like [Nicotiana tomentosiformis]
JMSF021B03Sequence626012121 (6)ref|XP_009604116.1|7e-69PREDICTED: ferredoxin, root R-B1-like [Nicotiana tomentosiformis]631012121 (6)ref|XP_009604116.1|7e-69PREDICTED: ferredoxin, root R-B1-like [Nicotiana tomentosiformis]
JMSF040L19Sequence715012121 (6)ref|XP_009604116.1|2e-68PREDICTED: ferredoxin, root R-B1-like [Nicotiana tomentosiformis]777012121 (6)ref|XP_009604116.1|4e-68PREDICTED: ferredoxin, root R-B1-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF021B03-                                                         CCTGACAATTCAA
JMSF021B03+                                                          CCTGACAATTCAA
JMFN033I07+                                                     ATAATCCTGACAATTCAA
rJMSF040L19-             AAAATGCTGAAATGGGGGGAAGGCAATGCCAATTGAATCATAATCCTGACAATTCAA
                      ____________________________________________________________
consensus                AAAATGCTGAAATGGGGGGAAGGCAATGCCAATTGAATCATAATCCTGACAATTCAA
 
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rJMSF021B03-          GAAAACAAGCTAACATACTGTTGTCAGTCATGTAACTGCTACAAGGGAATAAGCTGTGAA
JMSF021B03+           GAAAACAAGCTAACATACTGTTGTCAGTCATGTAACTGCTACAAGGGAATAAGCTGTGAA
JMFN033I07+           GAAAACAAGCTAACATACTGTTGTCAGTCATGTAACTGCTACAAGGGAATAAGCTGTGAA
rJMSF040L19-          GAAAACAAGCTAACATACTGTTGTCAGTCATGTAACTGCTACAAGGGAATAAGCTGTGAA
JMSF040L19+                CAAGCTAACATACTGNTGTCAGTCATGTAACTGCTACAAGGGAATAAGCTGTGAA
                      ____________________________________________________________
consensus             GAAAACAAGCTAACATACTGTTGTCAGTCATGTAACTGCTACAAGGGAATAAGCTGTGAA
 
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rJMSF021B03-          GTAATACCTAGAAAAGCTCAGTCTCCTTGTGAGTGTGAATCACACAATCTGAGGTCGGGT
JMSF021B03+           GTAATACCTAGAAAAGCTCAGTCTCCTTGTGAGTGTGAATCACACAATCTGAGGTCGGGT
JMFN033I07+           GTAATACCTAGAAAAGCTCAGTCTCCTTGTGAGTGTGAATCACACAATCTGAGGTCGGGT
JMFN030J14+                    AGAAAAGCTCAGTCTCCTTGTGAGTGTGAATCACACAATCTGAGGTCGGGT
rJMSF040L19-          GTAATACCTAGAAAAGCTCAGTCTCCTTGTGAGTGTGAATCACACAATCTGAGGTCGGGT
JMSF040L19+           GTAATACCTAGAAAAGCTCAGTCTCCTTGTGAGTGTGAATCACACAATCTGAGGTCGGGT
                      ____________________________________________________________
consensus             GTAATACCTAGAAAAGCTCAGTCTCCTTGTGAGTGTGAATCACACAATCTGAGGTCGGGT
 
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rJMSF021B03-          AAGCGACACAAGTCAGCAAATATCCCTCTTCCATTTGGCTATCATCAAGAAACGATCCAT
JMSF021B03+           AAGCGACACAAGTCAGCAAATATCCCTCTTCCATTTGGCTATCATCAAGAAACGATCCAT
JMFN033I07+           AAGCGACACAAGTCAGCAAATATCCCTCTTCCATTTGGCTATCATCAAGAAACGATCCAT
JMFN030J14+           AAGCGACACAAGTCAGCAAATATCCCTCTTCCATTTGGCTATCATCAAGAAACGATCCAT
rJMSF040L19-          AAGCGACACAAGTCAGCAAATATCCCTCTTCCATTTGGCTATCATCAAGAAACGATCCAT
JMSF040L19+           AAGCGACACAAGTCAGCAAATATCCCTCTTCCATTTGGCTATCATCAAGAAACGATCCAT
                      ____________________________________________________________
consensus             AAGCGACACAAGTCAGCAAATATCCCTCTTCCATTTGGCTATCATCAAGAAACGATCCAT
 
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rJMSF021B03-          CAGATTGATCAACAGAACCGGACGCGATCTTCCCAGCACAAGTGCAGCATGCACCAGCCC
JMSF021B03+           CAGATTGATCAACAGAACCGGACGCGATCTTCCCAGCACAAGTGCAGCATGCACCAGCCC
JMFN033I07+           CAGATTGATCAACAGAACCGGACGCGATCTTCCCAGCACAAGTGCAGCATGCACCAGCCC
JMFN030J14+           CAGATTGATCAACAGAACCGGACGCGATCTTCCCAGCACAAGTGCAGCATGCACCAGCCC
rJMSF040L19-          CAGATTGATCAACAGAACCGGACGCGATCTTCCCAGCACAAGTGCAGCATGCACCAGCCC
JMSF040L19+           CAGATTGATCAACAGAACCGGACGCGATCTTCCCAGCACAAGTGCAGCATGCACCAGCCC
                      ____________________________________________________________
consensus             CAGATTGATCAACAGAACCGGACGCGATCTTCCCAGCACAAGTGCAGCATGCACCAGCCC
 
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rJMSF021B03-          TGCAAGAATAGGGCAGGTCCATCCCTGCCGCCTCTGCAGAGTCCAGGATGTAAGCATCGG
JMSF021B03+           TGCAAGAATAGGGCAGGTCCATCCCTGCCGCCTCTGCAGAGTCCAGGATGTAAGCATCGG
JMFN033I07+           TGCAAGAATAGGGCAAGTCCATCCCTGCCGCCTCTGCAGAGTCCAGGATGTAAGCATCGG
JMFN030J14+           TGCAAGAATAGGGCAAGTCCATCCCTGCCGCCTCTGCAGAGTCCAGGATGTAAGCATCGG
rJMSF040L19-          TGCAAGAATAGGGCAGGTCCATCCCTGCCGCCTCTGCAGAGTCCAGGATGTAAGCATCGG
JMSF040L19+           TGCAAGAATAGGGCAGGTCCATCCCTGCCGCCTCTGCAGAGTCCAGGATGTAAGCATCGG
                      ____________________________________________________________
consensus             TGCAAGAATAGGGCAGGTCCATCCCTGCCGCCTCTGCAGAGTCCAGGATGTAAGCATCGG
 
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rJMSF021B03-          CAGGTGCATCAAACTCGTGCTCATTGCCATCAGGGTCTATCAACTTGACCTTGTATACTG
JMSF021B03+           CAGGTGCATCAAACTCGTGCTCATTGCCATCAGGGTCTATCAACTTGACCTTGTATACTG
JMFN033I07+           CAGGTGCATCAAACTCGTGCTCATTGCCATCAGGGTCTATCAACTTGACCTTGTATACTG
JMFN030J14+           CAGGTGCATCAAACTCGTGCTCATTGCCATCAGGGTCTATCAACTTGACCTTGTATACTG
rJMSF040L19-          CAGGTGCATCAAACTCGTGCTCATTGCCATCAGGGTCTATCAACTTGACCTTGTATACTG
JMSF040L19+           CAGGTGCATCAAACTCGTGCTCATTGCCATCAGGGTCTATCAACTTGACCTTGTATACTG
                      ____________________________________________________________
consensus             CAGGTGCATCAAACTCGTGCTCATTGCCATCAGGGTCTATCAACTTGACCTTGTATACTG
 
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rJMSF021B03-          CATTTGCAGATGCTCTGAAGCGAGAGTCAGCTTTCAAGTTCAAACCGAAAGATTTAGTGG
JMSF021B03+           CATTTGCAGATGCTCTGAAGCGAGAGTCAGCTTTCAAGTTCAAACCGAAAGATTTAGTGG
JMFN033I07+           CATTTGCAGATGCTCTGAAGCGAGAGTCAGCTTTCAAGTTCAAACCGAAAGATTTAGTGG
JMFN030J14+           CATTTGCAGATGCTCTGAAGCGAGAGTCAGCTTTCAAGTTCAAACCGAAAGATTTAGTGG
rJMSF040L19-          CATTTGCAGATGCTCTGAAGCGAGAGTCAGCTTTCAAGTTCAAACCGAAAGATTTAGTGG
JMSF040L19+           CATTTGCAGATGCTCTGAAGCGAGAGTCAGCTTTCAAGTTCAAACCGAAAGATTTAGTGG
                      ____________________________________________________________
consensus             CATTTGCAGATGCTCTGAAGCGAGAGTCAGCTTTCAAGTTCAAACCGAAAGATTTAGTGG
 
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rJMSF021B03-          TGCTTTTAATAGACACTGGAGACGATGGGAACTTGACAGAGGCACTCTTAGTTCTGGCAT
JMSF021B03+           TGCTTTTAATAGACACTGGAGACGATGGGAACTTGACAGAGGCACTCTTAGTTCTGGCAT
JMFN033I07+           TGCTTTTAATAGACACTGGAGACGATGGGAACTTGACAGAGGCACTCTTAGTTCTGGCAT
JMFN030J14+           TGCTTTTAATAGACACTGGAGACGATGGGAACTTGACAGAGGCACTCTTAGTTCTGGCAT
rJMSF040L19-          TGCTTTTAATAGACACTGGAGACGATGGGAACTTGACAGAGGCACTCTTAGTTCTGGCAT
JMSF040L19+           TGCTTTTAATAGACACTGGAGACGATGGGAACTTGACAGAGGCACTCTTAGTTCTGGCAT
                      ____________________________________________________________
consensus             TGCTTTTAATAGACACTGGAGACGATGGGAACTTGACAGAGGCACTCTTAGTTCTGGCAT
 
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rJMSF021B03-          GAGTTGCAGGAATGGACACACAACTAGATGGGAGACCGACAGTCGACATGTTTACCAAGA
JMSF021B03+           GAGTTGCAGGAATGGACACACAACTAGATGGGAGACCGACAGTCGACATGTTTACCAAGA
JMFN033I07+           GAGTTGCAGGAATGGACACACAACTAGATGGGAGACCGACAGTCGACATGTTTACCAAGA
JMFN030J14+           GAGTTGCAGGAATGGACACACAACTAGATGGGAGACCGACAGTCGACATGTTTACCAAGA
rJMSF040L19-          GAGTTGCAGGAATGGACACACAACTAGATGGGAGACCGACAGTCGACATGTTTACCAAGA
JMSF040L19+           GAGTTGCAGGAATGGACACACAACTAGATGGGAGACCGACAGTCGACATGTTTACCAAGA
                      ____________________________________________________________
consensus             GAGTTGCAGGAATGGACACACAACTAGATGGGAGACCGACAGTCGACATGTTTACCAAGA
 
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rJMSF021B03-          CGGGATTTGTGATTGTGGAGTCAAGAATGAGCTAATGAGAGAGTGAAGAAGCGGCGCAGT
JMSF021B03+           CGGGATTTGTGATTGTGGAGTCAAGAATGAGCTAATGAGAGAGTGAAGAAGCGGCGCAGT
JMFN033I07+           CGGGATTTGTGATTGTGGAGTCAAGAATGAGCTAATGAGAGAGTGAAGAAGCGGCGCAGT
JMFN030J14+           CGGGATTTGTGATTGTGGAGTCAAGAATGAGCTAATGAGAGAGTGAAGAAGCGGCGCAGT
rJMSF040L19-          CGGGATTTGTGATTGTGGAGTCAAGAATGAGCTAATGAGAGAGTGAAGAAGCGGCGCAGT
JMSF040L19+           CGGGATTTGTGATTGTGGAGTCAAGAATGAGCTAATGAGAGAGTGAAGAAGCGGCGCAGT
                      ____________________________________________________________
consensus             CGGGATTTGTGATTGTGGAGTCAAGAATGAGCTAATGAGAGAGTGAAGAAGCGGCGCAGT
 
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rJMSF021B03-          AGAGGAATCGGC                                                
JMSF021B03+           AGAGGAATCGGC                                                
JMFN033I07+           AGAGGAA                                                     
JMFN030J14+           AGAGGAA                                                     
rJMSF040L19-          AGAGGAATCGGCGCTTAGAAAAGTGGCTCCAAAATGCGGATTTATAGAAAGACAGATGGT
JMSF040L19+           AGAGGAATCGGCGCTTAGAAAAGTGGCTCCAAAATGCGGATTTATAGAAAGACAGATGGT
                      ____________________________________________________________
consensus             AGAGGAATCGGCGCTTAGAAAAGTGGCTCCAAAATGCGGATTTATAGAAAGACAGATGGT
 
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rJMSF040L19-          TCGATGATCTAAACTCCGTCCAGAGCCGACGAATCGCCTCGCGCCTGCATTTGTACAGCC
JMSF040L19+           TCGATGATCTAAACTCCGTCCAGAGCCGACGAATCGCCTCGCGCCTGCATTTGTACAGCC
                      ____________________________________________________________
consensus             TCGATGATCTAAACTCCGTCCAGAGCCGACGAATCGCCTCGCGCCTGCATTTGTACAGCC