Contig 012120:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN006P18Sequence618012120 (3)ref|XP_006366224.1|1e-46PREDICTED: prohibitin-3, mitochondrial-like [Solanum tuberosum]
JMSF040K20Sequence640012120 (3)gb|EYU34781.1|3e-113hypothetical protein MIMGU_mgv1a011486mg [Erythranthe guttata]802012120 (3)ref|XP_006366224.1|1e-62PREDICTED: prohibitin-3, mitochondrial-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF040K20-                        AGTCTGGGTTCCTAGTAAACTAGCTGCCTAGTTATTATAGATTGTT
                      ____________________________________________________________
consensus                           AGTCTGGGTTCCTAGTAAACTAGCTGCCTAGTTATTATAGATTGTT
 
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rJMSF040K20-          TGCTTATCAAAAGAAGAAAAAAATCGTGTAAATTGTTTGTAATCAAGCAGCACCTTATTG
                      ____________________________________________________________
consensus             TGCTTATCAAAAGAAGAAAAAAATCGTGTAAATTGTTTGTAATCAAGCAGCACCTTATTG
 
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JMFN006P18+                       TTATCAAAACAAAATAAGCTGTTTGTAAGCAAACACCTAGGTGCTCTC
rJMSF040K20-          TAAATTGTTTGCTTATCAAAACAAAATAAGCTGTTTGTAAGCAAACACCTAGGTGCTCTC
                      ____________________________________________________________
consensus             TAAATTGTTTGCTTATCAAAACAAAATAAGCTGTTTGTAAGCAAACACCTAGGTGCTCTC
 
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JMFN006P18+           TTTTGCAACTAAAAANAACTAAAGAAAAATAGAATCAAATGAGAAAGCTGCAAAAGAATC
rJMSF040K20-          TTTTGCAACTAAAAAAAACTAAAGAAAAATAGAATCAAATGAGAAAGCTGCAAAAGAATC
                      ____________________________________________________________
consensus             TTTTGCAACTAAAAAAAACTAAAGAAAAATAGAATCAAATGAGAAAGCTGCAAAAGAATC
 
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JMFN006P18+           ATTCCAAACAGAAAGAATGCACAATGTCCAATCAGTATACCAGCACCAACTGAGAAAGCT
rJMSF040K20-          ATTCCAAACAGAAAGAATGCACAATGTCCAATCAGTATACCAGCACCAACTGAGAAAGCT
                      ____________________________________________________________
consensus             ATTCCAAACAGAAAGAATGCACAATGTCCAATCAGTATACCAGCACCAACTGAGAAAGCT
 
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JMFN006P18+           ACCTGTTCGCCAGTACAAATCCTGCTTAACGATTTTGGAGACCAAGGAGAAGGTTGTTGC
rJMSF040K20-          ACCTGTTCGCCAGTACAAATCCTGCTTAACGATTTTGGAGACCAAGGAGAAGGTTGTTGC
                      ____________________________________________________________
consensus             ACCTGTTCGCCAGTACAAATCCTGCTTAACGATTTTGGAGACCAAGGAGAAGGTTGTTGC
 
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JMFN006P18+           CCTTAGGAAGGTACTGAATATTAGGAGTCTTGGCCAAGGTGGATGCGATCTCATTCGAGG
rJMSF040K20-          CCTTAGGAAGGTACTGAATATTAGGAGTCTTGGCCAAGGTGGATGCGATCTCCTTCGAGG
                      ____________________________________________________________
consensus             CCTTAGGAAGGTACTGAATATTAGGAGTCTTGGCCAAGGTGGATGCGATCTCCTTCGAGG
 
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JMFN006P18+           CCTCGATCCTCCTGAGCTCTATTAAACCCATGCCGGCAGCAGAAGTAGCGTCAGAAATGA
rJMSF040K20-          CCTCGATCCTCCTGAGCTCTATTAAACCCATGCCGGCAGCAGAAGTAGCGTCAGAAATGA
                      ____________________________________________________________
consensus             CCTCGATCCTCCTGAGCTCTATTAAACCCATGCCGGCAGCAGAAGTAGCGTCAGAAATGA
 
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JMFN006P18+           GTTTAGCAGACTCACTCTCACCTTCAGCTCGAATAATTGCGGCTCTCCGCTCTTGTTCAG
rJMSF040K20-          GTTTAGCAGACTCACTCTCACCTTCAGCTCGAATAATTGCGGCTCTCCGCTCTTGTTCAG
                      ____________________________________________________________
consensus             GTTTAGCAGACTCACTCTCACCTTCAGCTCGAATAATTGCGGCTCTCCGCTCTTGTTCAG
 
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JMFN006P18+           CCTTCATCACAACAAACTTGGACCGCTCCGCTTCCTGCTGAGCAACCTGCTTTTGTTCAA
rJMSF040K20-          CCTTCATCACAACAAACTTGGACCGCTCCGCTTCCTGCTGAGCAACCTGCTTTTGTTCAA
                      ____________________________________________________________
consensus             CCTTCATCACAACAAACTTGGACCGCTCCGCTTCCTGCTGAGCAACCTGCTTTTGTTCAA
 
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JMFN006P18+           CGGCTTTGGAGAACTCCGCACCGTAAGACAAATGCGTTATAGCGACATCATCAAGCACAA
rJMSF040K20-          CGGCTTTGGAGAACTCCGCACCGTAAGACAAATGCGTTATAGCGACATCATCAAGCACAA
JMSF040K20+                               CCGTAAGACAAATGCGTTATAGCGACATCATCAAGCACAA
                      ____________________________________________________________
consensus             CGGCTTTGGAGAACTCCGCACCGTAAGACAAATGCGTTATAGCGACATCATCAAGCACAA
 
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JMFN006P18+           TGTCAAAATCCTTAGCTCGGCAAATCAAGCTCTCCCGGACCTGAGCCGACACGTGGGGGC
rJMSF040K20-          TGTCAAAATCCTTAGCTCGGCAAATCAAGCTCTCCCGGACCTGAGCCGACACGTGGGGGC
JMSF040K20+           TGTCAAAATCCTTAGCTCGGCAAATCAAGCTCTCCCGGACCTGAGCCGACACGTGGGGGC
                      ____________________________________________________________
consensus             TGTCAAAATCCTTAGCTCGGCAAATCAAGCTCTCCCGGACCTGAGCCGACACGTGGGGGC
 
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JMFN006P18+           GCTCCGTCAGTAGCTGATCAGCATTAAACT                              
rJMSF040K20-          GCTCCGTCAGTAGCTGATCAGCATTAAACTGAGCAACCACGGATTTAAGAACCTCGTTGC
JMSF040K20+           GCTCCGTCAGTAGCTGATCAGCATTAAACTGAGCAACCACGGATTTAAGAACCTCGTTGC
                      ____________________________________________________________
consensus             GCTCCGTCAGTAGCTGATCAGCATTAAACTGAGCAACCACGGATTTAAGAACCTCGTTGC
 
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rJMSF040K20-          CGATCGAGGGAAGCACCTTCTCGTCATACTCTAACC                        
JMSF040K20+           CGATCGAGGGAAGCACCTTCTCGTCATACTCTAACCCCAATGTTTTGAAAATATTGGGGA
                      ____________________________________________________________
consensus             CGATCGAGGGAAGCACCTTCTCGTCATACTCTAACCCCAATGTTTTGAAAATATTGGGGA
 
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JMSF040K20+           GATGGCCGACCTCGGGGCGGGATAGGACCCGGAGGGTCAGATTAACCATCTGCAAATCCT
                      ____________________________________________________________
consensus             GATGGCCGACCTCGGGGCGGGATAGGACCCGGAGGGTCAGATTAACCATCTGCAAATCCT
 
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JMSF040K20+           TTGTTCCAGACACGGACGAGAAAGTGTGTGGCCTAGTGCGAATATCAAAGATGAACGGCT
                      ____________________________________________________________
consensus             TTGTTCCAGACACGGACGAGAAAGTGTGTGGCCTAGTGCGAATATCAAAGATGAACGGCT
 
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JMSF040K20+           TCTGTAGCCACGGGACCAGAAAGTGCGTCCCCTCGCCTACGGTATGGTCGATCACACCAC
                      ____________________________________________________________
consensus             TCTGTAGCCACGGGACCAGAAAGTGCGTCCCCTCGCCTACGGTATGGTCGATCACACCAC
 
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JMSF040K20+           GGAACCGATCAAAAAGCACGGCGCGTTGGCCGCCGTCGACGGTGTACATCGCGGAGTTAA
                      ____________________________________________________________
consensus             GGAACCGATCAAAAAGCACGGCGCGTTGGCCGCCGTCGACGGTGTACATCGCGGAGTTAA
 
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JMSF040K20+           GCACCGTCGCGCCAACTCCGAAGCCGAAAGCGGCCCGAGCAATGCTGGTGAGAAATGAAA
                      ____________________________________________________________
consensus             GCACCGTCGCGCCAACTCCGAAGCCGAAAGCGGCCCGAGCAATGCTGGTGAGAAATGAAA
 
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JMSF040K20+           CGGCTTGTTGGCTTCCCATGATTGAGAACGAAAGTAGAAATCGGAGATTTAGGTAGGGTT
                      ____________________________________________________________
consensus             CGGCTTGTTGGCTTCCCATGATTGAGAACGAAAGTAGAAATCGGAGATTTAGGTAGGGTT
 
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JMSF040K20+           TTAGCTCTGCAACGTCGATGGGGTAAAATGAGGTGTATTTGAACCAAACTGGATTCTTCC
                      ____________________________________________________________
consensus             TTAGCTCTGCAACGTCGATGGGGTAAAATGAGGTGTATTTGAACCAAACTGGATTCTTCC