| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016I04 | Sequence | 604 | 012117 (4) | ref|XP_006340574.1| | 4e-94 | PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum] | 749 | 002725 (4) | ref|XP_006340574.1| | 6e-96 | PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum] |
| JMFF049F15 | Sequence | 621 | 012117 (4) | ref|XP_006340574.1| | 6e-98 | PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum] | 341 | 002725 (4) | |||
| JMFS153H07 | Sequence | 640 | 012117 (4) | ref|XP_006340574.1| | 7e-102 | PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum] | |||||
| JMSF039P16 | Sequence | 671 | 012117 (4) | ref|XP_006340574.1| | 1e-66 | PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum] | 849 | 002725 (4) | ref|XP_006340574.1| | 3e-119 | PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF039P16+ GCCATGAGAAA
____________________________________________________________
consensus GCCATGAGAAA
. : . : . : . : . : . :
JMSF039P16+ TGCACATAGATACTATCCTAGAATATAATTCAATCAAAATATAGAATCATTGTAGTCTAG
____________________________________________________________
consensus TGCACATAGATACTATCCTAGAATATAATTCAATCAAAATATAGAATCATTGTAGTCTAG
. : . : . : . : . : . :
JMSF039P16+ ACAAATGATACTCTAGCCTTACATTATTTCAGAAATCAGAAAACTATTAAAATACCAGAA
____________________________________________________________
consensus ACAAATGATACTCTAGCCTTACATTATTTCAGAAATCAGAAAACTATTAAAATACCAGAA
. : . : . : . : . : . :
JMSF039P16+ TGAAACAATCACTAAAAACTTCTAGTTTTATTCCCTCTTTTGAGTGATTGAGTCTAAAAG
____________________________________________________________
consensus TGAAACAATCACTAAAAACTTCTAGTTTTATTCCCTCTTTTGAGTGATTGAGTCTAAAAG
. : . : . : . : . : . :
JMFF016I04+ CATTTCCTCTCTGATCAGTGTTTGGTACTTCAACTTTAATT
JMFF049F15+ CATTTCCTCTCTGATCAGTGTTTGGTACTTCAACTTTAATT
JMFS153H07+ CATTTCCTCTCTGATCAGTGTTTGGTACTTCAACTTTAATT
JMSF039P16+ GCAGTAGTATAAATCCTTACATTTCCTCTCTGATCAGTGTTTGGTACTTCAACTTTAATT
____________________________________________________________
consensus GCAGTAGTATAAATCCTTACATTTCCTCTCTGATCAGTGTTTGGTACTTCAACTTTAATT
. : . : . : . : . : . :
JMFF016I04+ GGAGAACCAGTTGTTAACCCTTCAGCAACACCAGATGCTATCTTGCAGGTGTCAGTCTCT
JMFF049F15+ GGAGAACCAGTTGTTAACCCTTCAGCAACACCAGATGCTATCTTGCAGGTGTCAGTCTCT
JMFS153H07+ GGAGAACCAGTTGTTAACCCTTCAGCAACACCAGATGCTATCTTGCAGGTGTCAGTCTCT
JMSF039P16+ GGAGAACCAGTTGTTAACCCTTCAGCAACACCAGATGCTATCTTGCAGGTGTCAGTCTCT
____________________________________________________________
consensus GGAGAACCAGTTGTTAACCCTTCAGCAACACCAGATGCTATCTTGCAGGTGTCAGTCTCT
. : . : . : . : . : . :
JMFF016I04+ TTTCTAGGCGTTGTGATTCGACTTTGACCTGGCCTCCTCCTATCAAGCTCCACCTGCATA
JMFF049F15+ TTTCTAGGCGTTGTGATTCGACTTTGACCTGGCCTCCTCCTATCAAGCTCCACCTGCATA
JMFS153H07+ TTTCTAGGCGTTGTGATTCGACTTTGACCTGGCCTCCTCCTATCAAGCTCCACCTGCATA
JMSF039P16+ TTTCTAGGCGTTGTGATTCGACTTTGACCTGGCCTCCTCCTATCAAGCTCCACCTGCATA
____________________________________________________________
consensus TTTCTAGGCGTTGTGATTCGACTTTGACCTGGCCTCCTCCTATCAAGCTCCACCTGCATA
. : . : . : . : . : . :
JMFF016I04+ TCAGATTCCGAAAGGGGAAGCCGAGGAGGACATCCATCAATGATGCAGCCAACACCTCCA
JMFF049F15+ TCAGATTCCGAAAGGGGAAGCCGAGGAGGACATCCATCAATGATGCAGCCAACACCTCCA
JMFS153H07+ TCAGATTCCGAAAGGGGAAGCCGAGGAGGACATCCATCAATGATGCAGCCAACACCTCCA
JMSF039P16+ TCAGATTCCGAAAGGGGAAGCCGAGGAGGACATCCATCAATGATGCAGCCAACACCTCCA
____________________________________________________________
consensus TCAGATTCCGAAAGGGGAAGCCGAGGAGGACATCCATCAATGATGCAGCCAACACCTCCA
. : . : . : . : . : . :
JMFF016I04+ CCATGAGATTCTCCGAATGTTGTAACGCGGAAATAATTTCCAAATGTACTACCAGCAGCC
JMFF049F15+ CCATGAGATTCTCCGAATGTTGTAACGCGGAAATAATTTCCAAATGTACTACCAGCAGCC
JMFS153H07+ CCATGAGATTCTCCGAATGTTGTAACGCGGAAATAATTTCCAAATGTACTACCAGCAGCC
JMSF039P16+ CCATGAGATTCTCCGAATGTTGTAACGCGGAAATAATTTCCAAATGTACTACCAGCAGCC
____________________________________________________________
consensus CCATGAGATTCTCCGAATGTTGTAACGCGGAAATAATTTCCAAATGTACTACCAGCAGCC
. : . : . : . : . : . :
JMFF016I04+ TTTATCTCGAGGCGTTTGGAGTGCGATCGTCGAGCAGGGAGTTGGAGGCTGGAAGATGAT
JMFF049F15+ TTTATCTCGAGGCGTTTGGAGTGCGATCGTCGAGCAGGGAGTTGGAGGCTGGAAGATGAT
JMFS153H07+ TTTATCTCGAGGCGTTTGGAGTGCGATCGTCGAGCAGGGAGTTGGAGGCTGGAAGATGAT
JMSF039P16+ TTTATCTCGAGGCGTTTGGAGTGCGATCGTCGAGCAGGGAGTTGGAGGCTGGAAGATGAT
____________________________________________________________
consensus TTTATCTCGAGGCGTTTGGAGTGCGATCGTCGAGCAGGGAGTTGGAGGCTGGAAGATGAT
. : . : . : . : . : . :
JMFF016I04+ AGATTGGATGGTGCCTGGAACGATCCGAGACGTGAAGATGACGGAGCTCCGAGGAATTGC
JMFF049F15+ AGATTGGATGGTGCCTGGAACGATCCGAGACGTGAAGATGACGGAGCTCCGAGGAATTGC
JMFS153H07+ AGATTGGATGGTGCCTGGAACGATCCGAGACGTGAAGATGACGGAGCTCCGAGGAATTGC
JMSF039P16+ AGATTGGATGGTGCCTGGAACGATCCGAGACGTGAAGATGACGGAGCTCCGAGGAATTGC
____________________________________________________________
consensus AGATTGGATGGTGCCTGGAACGATCCGAGACGTGAAGATGACGGAGCTCCGAGGAATTGC
. : . : . : . : . : . :
JMFF016I04+ TTGGTGGTTGAGAGAGACGACGCCATTTCTACGTCGTCGTTTTTGCCTTCTTCTACCTT
JMFF049F15+ TTGGTGGTTGAGAGAGACGACGCCATTTCTACGTCGTCGTTTTTGCCTTCTTCTACCTT
JMFS153H07+ TTGGTGGTTGAGAGAGACGACGCCATTTCTACGTCGTCGTTTTTG
JMSF039P16+ TTGGTGGTTGAGAGAGACGACGCCATTTCTACGTCGTCGTTTTTGCCTTCTTCTACCTTC
____________________________________________________________
consensus TTGGTGGTTGAGAGAGACGACGCCATTTCTACGTCGTCGTTTTTGCCTTCTTCTACCTTC