Contig 012113:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018C18Sequence529012113 (3)ref|XP_006351637.1|3e-52PREDICTED: probable fructokinase-4-like [Solanum tuberosum]759013682 (3)ref|XP_009757358.1|1e-69PREDICTED: fructokinase-1 [Nicotiana sylvestris]
JMSF038B17Sequence722012113 (3)ref|XP_006351637.1|6e-58PREDICTED: probable fructokinase-4-like [Solanum tuberosum]872013682 (3)ref|XP_009757358.1|1e-88PREDICTED: fructokinase-1 [Nicotiana sylvestris]
JMSF039L03Sequence680012113 (3)ref|XP_006351637.1|1e-49PREDICTED: probable fructokinase-4-like [Solanum tuberosum]867013682 (3)ref|XP_009757358.1|3e-82PREDICTED: fructokinase-1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF038B17+                                                                 CGGTTC
                      ____________________________________________________________
consensus                                                                   CGGTTC
 
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JMFF018C18+                                          TGAAGCACATCTGAGAGGAAACGTCCATA
JMSF038B17+           ATTCATCCCAACCATACTGATTCCTTCACTATGAAGCACATCTGAGAGGAAACGTCCATA
JMSF039L03+                                                   TCTGAGAGGAAACGTCCATA
                      ____________________________________________________________
consensus             ATTCATCCCAACCATACTGATTCCTTCACTATGAAGCACATCTGAGAGGAAACGTCCATA
 
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JMFF018C18+           GACATCATTGCCAACATGACCAATTGTAGTACAGCAAAGCCCAAGTCTCGCTGCTGCTAT
JMSF038B17+           GACATCATTGCCAACATGACCAATTGTAGTACAGCAAAGCCCAAGTCTCGCTGCTGCTAT
JMSF039L03+           GACATCATTGCCAACATGACCAATTGTAGTACAGCAAAGCCCAAGTCTCGCTGCTGCTAT
                      ____________________________________________________________
consensus             GACATCATTGCCAACATGACCAATTGTAGTACAGCAAAGCCCAAGTCTCGCTGCTGCTAT
 
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JMFF018C18+           TGCTACATTGCTGTTGCCACCAGCTTCCCAGTATTCCTTATCCGGTGGAGTTTTGGACAG
JMSF038B17+           TGCTACATTGCTGTTGCCACCAGCTTCCCAGTATTCCTTATCCGGTGGAGTTTTGGACAG
JMSF039L03+           TGCTACATTGCTGTTGCCACCAGCTTCCCAGTATTCCTTATCCGGTGGAGTTTTGGACAG
                      ____________________________________________________________
consensus             TGCTACATTGCTGTTGCCACCAGCTTCCCAGTATTCCTTATCCGGTGGAGTTTTGGACAG
 
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JMFF018C18+           CTCATCCATGTAAGCCTTGCGCTGGTCACGGGGCTTGGGGGGCAGTTTAGGGACATTGAG
JMSF038B17+           CTCATCCATGTAAGCCTTGCGCTGGTCACGGGGCTTGGGGGGCAGTTTAGGGACATTGAG
JMSF039L03+           CTCATCCATGTAAGCCTTGCGCTGGTCACGGGGCTTGGGGGGCAGTTTAGGGACATTGAG
                      ____________________________________________________________
consensus             CTCATCCATGTAAGCCTTGCGCTGGTCACGGGGCTTGGGGGGCAGTTTAGGGACATTGAG
 
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JMFF018C18+           CACAATATCAACGCAGAGGTTCCCGAGCGTCGCGACATCTATGTCCTTAACCCCGACCGC
JMSF038B17+           CACAATATCAACGCAGAGGTTCCCGAGCGTCGCGACATCTATGTCCTTAACCCCGACCGC
JMSF039L03+           CACAATATCAACGCAGAGGTTCCCGAGCGTCGCGACATCTATGTCCTTAACCCCGACCGC
                      ____________________________________________________________
consensus             CACAATATCAACGCAGAGGTTCCCGAGCGTCGCGACATCTATGTCCTTAACCCCGACCGC
 
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JMFF018C18+           CCTGAGGCGGCGGTCTTCGCCGGAGCCGTTGGAACGCCGGAGCTTTGTTGCCGGAATTTC
JMSF038B17+           CCTGAGGCGGCGGTCTTCGCCGGAGCCGTTGGAACGCCGGAGCTTTGTTGCCGGAATTTC
JMSF039L03+           CCTGAGGCGGCGGTCTTCGCCGGAGCCGTTGGAACGCCGGAGCTTTGTTGCCGGAATTTC
                      ____________________________________________________________
consensus             CCTGAGGCGGCGGTCTTCGCCGGAGCCGTTGGAACGCCGGAGCTTTGTTGCCGGAATTTC
 
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JMFF018C18+           TATCCCCCGGCTATTGAGAACCGAACAACGAGCCCTACTTCTATTGAGCGAGACGGAACG
JMSF038B17+           TATCCCCCGGCTATTGAGAACCGAACAACGAGCCCTACTTCTATTGAGCGAGACGGAACG
JMSF039L03+           TATCCCCCGGCTATTGAGAACCGAACAACGAGCCCTACTTCTATTGAGCGAGACGGAACG
                      ____________________________________________________________
consensus             TATCCCCCGGCTATTGAGAACCGAACAACGAGCCCTACTTCTATTGAGCGAGACGGAACG
 
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JMFF018C18+           AATTACAGGCAGTCTAGGGTTTTGAGCAGAGGTCGGGTGTGAGAAAAGGCCATTTGGTGG
JMSF038B17+           AATTACAGGCAGTCTAGGGTTTTGAGCAGAGGTCGGGTGTGAGAAAAGGCCATTTGGTGG
JMSF039L03+           AATTACAGGCAGTCTAGGGTTTTGAGCAGAGGTCGGGTGTGAGAAAAGGCCATTTGGTGG
                      ____________________________________________________________
consensus             AATTACAGGCAGTCTAGGGTTTTGAGCAGAGGTCGGGTGTGAGAAAAGGCCATTTGGTGG
 
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JMFF018C18+           AACTAGCGTCGATTTCCCGGTTATAGCTTGATGATGCATTCAGGTAACAAAAACCACAAA
JMSF038B17+           AACTAGCGTCGATTTCCCGGTTATAGCTTGATGATGCATTCAGGTAACAAAAACCACAAA
JMSF039L03+           AACTAGCGTCGATTTCCCGGTTATAGCTTGATGATGCATTCAGGTAACAAAAACCACAAA
                      ____________________________________________________________
consensus             AACTAGCGTCGATTTCCCGGTTATAGCTTGATGATGCATTCAGGTAACAAAAACCACAAA
 
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JMFF018C18+           TCACAATCTCAAATTCAACA                                        
JMSF038B17+           TCACAATCTCAAATTCAACAGAGTAACAGTGGAGAAGAGAATGGCGGTGTTATCACGATT
JMSF039L03+           TCACAATCTCAAATTCAACAGAGTAACAGTGGAGAAGAGAATGGCGGTGTTATCACGATT
                      ____________________________________________________________
consensus             TCACAATCTCAAATTCAACAGAGTAACAGTGGAGAAGAGAATGGCGGTGTTATCACGATT
 
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JMSF038B17+           GTGAAATGCGCAATCTCTTACGAATCTGAGAATCTTGGAATGGAATTGATTCAATTGAAT
JMSF039L03+           GTGAAATGCGCAATCTCTTACGAATCTGAGAATCTTGGAATGGAATTGATTCAATTGAAT
                      ____________________________________________________________
consensus             GTGAAATGCGCAATCTCTTACGAATCTGAGAATCTTGGAATGGAATTGATTCAATTGAAT
 
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JMSF038B17+           GGAAGGTTCATAACTTCTTAGGAATAACCGTAGTCATTCCACTATCCACTCCAA      
JMSF039L03+           GGAAGGTTCATAACTTCTTAGGAATAACCGTAGTCATTCCACTATCCACTCCAATGAATC
                      ____________________________________________________________
consensus             GGAAGGTTCATAACTTCTTAGGAATAACCGTAGTCATTCCACTATCCACTCCAATGAATC