| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF032B03 | Sequence | 555 | 012112 (6) | ref|XP_011091432.1| | 8e-93 | PREDICTED: myb family transcription factor APL-like isoform X2 [Sesamum indicum | 679 | 012112 (6) | ref|XP_008380567.1| | 5e-53 | PREDICTED: myb family transcription factor APL isoform X2 [Malus domestica] |
| JMSF008B11 | Sequence | 256 | 012112 (6) | 473 | 012112 (6) | gb|KDO61177.1| | 4e-10 | hypothetical protein CISIN_1g021481mg [Citrus sinensis] | |||
| JMSF039B08 | Sequence | 638 | 012112 (6) | ref|XP_011091432.1| | 2e-109 | PREDICTED: myb family transcription factor APL-like isoform X2 [Sesamum indicum | 815 | 012112 (6) | ref|XP_002300173.2| | 4e-86 | myb family transcription factor family protein [Populus trichocarpa] gb|EEE84978 |
This contig is upended
. : . : . : . : . : . :
rJMSF008B11- TTTTTAAGATCAAGCAAGCTGCCCAGGGTGCATTGGTTTCCATTGAGAGG
rJMFF032B03- GTTTCCATTGAGAGG
rJMSF039B08- GTTTCCATTGAGAGG
____________________________________________________________
consensus TTTTTAAGATCAAGCAAGCTGCCCAGGGTGCATTGGTTTCCATTGAGAGG
. : . : . : . : . : . :
rJMSF008B11- CGTTTGAATATCAAACGTAGAGAATATACATAAGATTGTGCAGTTTTGCAACATGTCAGA
rJMFF032B03- CGTTTGAATATCAAACGTAGAGAATATACATAAGATTGTGCAGTTTTGCAACATGTCAGA
rJMSF039B08- CGTTTGAATATCAAACGTAGAGAATATACATAAGATTGTGCAGTTTTGCAACATGTCAGA
____________________________________________________________
consensus CGTTTGAATATCAAACGTAGAGAATATACATAAGATTGTGCAGTTTTGCAACATGTCAGA
. : . : . : . : . : . :
rJMSF008B11- TTGATGAGAAACATTAAAATGATTACATTGTTCACGAGAACCAGAGACAACCTAGTTTTT
rJMFF032B03- TTGATGAGAAACATTAAAATGATTACATTGTTCACGAGAACCAGAGACAACCTAG-TTTT
rJMSF039B08- TTGATGAGAAACATTAAAATGATTACATTGTTCACGAGAACCAGAGACAACCTAGTTTTT
____________________________________________________________
consensus TTGATGAGAAACATTAAAATGATTACATTGTTCACGAGAACCAGAGACAACCTAGTTTTT
. : . : . : . : . : . :
rJMSF008B11- TTACCCGGCATTAGCCAGTGTCCATTCCACCTGCTGCTTCATGTTGCTGTCCAGAGGCAA
rJMFF032B03- TTACCCGGCATTAGCCAGTGTCCATTCCACCTGCTGCTTCATGTTGCTGTCCAGAGGCAA
JMSF008B11+ TGTCCAGAGGCAA
rJMSF039B08- TTACCCGGCATTAGCCAGTGTCCATTCCACCTGCTGCTTCATGTTGCTGTCCAGAGGCAA
____________________________________________________________
consensus TTACCCGGCATTAGCCAGTGTCCATTCCACCTGCTGCTTCATGTTGCTGTCCAGAGGCAA
. : . : . : . : . : . :
rJMSF008B11- AGACTCCTCGTTAGTAAACCCCCGAGGTCTCTTCTTCAGTGCAGCTAGCGAACTCATGCT
rJMFF032B03- AGACTCCTCGTTAGTAAACCCCCGAGGTCTCTTCTTCAGTGCAGCTAGCGAACTCATGCT
JMSF008B11+ AGACTCCTCGTTAGTAAACCCCCGAGGTCTCTTCTTCAGTGCAGCTAGCGAACTCATGCT
rJMSF039B08- AGACTCCTCGTTAGTAAACCCCCGAGGTCTCTTCTTCAGTGCAGCTAGCGAACTCATGCT
____________________________________________________________
consensus AGACTCCTCGTTAGTAAACCCCCGAGGTCTCTTCTTCAGTGCAGCTAGCGAACTCATGCT
. : . : . : . : . : . :
rJMSF008B11- CATTGTGGAAGCGGGAGTTCCATTCGATGTCAAGCAATCTACAGCAATGTCGGGTAACGA
rJMFF032B03- CATTGTGGAAGCGGGAGTTCCATTCGATGTCAAGCAATCTACAGCAATGTCGGGTAACGA
JMSF008B11+ CATTGTGGAAGCGGGAGTTCCATTCGATGTCAAGCAATCTACAGCAATGTCGGGTAACGA
rJMSF039B08- CATTGTGGAAGCGGGAGTTCCATTCGATGTCAAGCAATCTACAGCAATGTCGGGTAACGA
____________________________________________________________
consensus CATTGTGGAAGCGGGAGTTCCATTCGATGTCAAGCAATCTACAGCAATGTCGGGTAACGA
. : . : . : . : . : . :
rJMSF008B11- AGGGAGGGGAAAGATTGTGTGAGGATCGTTAGCTACCTTTATTGACAGCTCGGAGAGCTC
rJMFF032B03- AGGGAGGGGAAAGATTGTGTGAGGATCGTTAGCTACCTTTATTGACAGCTCGGAGAGCTC
JMSF008B11+ AGGGAGGGGAAAGATTGTGTGAGGATCGTTAGCTACCTTTATTGACAGCTCGGAGAGCTC
rJMSF039B08- AGGGAGGGGAAAGATTGTGTGAGGATCGTTAGCTACCTTTATTGACAGCTCGGAGAGCTC
____________________________________________________________
consensus AGGGAGGGGAAAGATTGTGTGAGGATCGTTAGCTACCTTTATTGACAGCTCGGAGAGCTC
. : . : . : . : . : . :
rJMSF008B11- TTCCCGGGCAGCTTCTAATCCATCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
rJMFF032B03- TTCCCGGGCAGCTTCTAATCCATCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
JMSF008B11+ TTCCCGGGCAGCTTCTAATCCATCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
rJMSF039B08- TTCCCGGGCAGCTTCTAATCCATCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
JMSF039B08+ TCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
____________________________________________________________
consensus TTCCCGGGCAGCTTCTAATCCATCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
. : . : . : . : . : . :
rJMSF008B11- TTT
rJMFF032B03- TTTCTCGAGAATCGATTGCAAATATTTGCTTTGAGCTTCTATACGAAGCTGGAGACGACG
JMSF008B11+ TTT
rJMSF039B08- TTTCTCGAGAATCGATTGCAAATATTTGCTTTGAGCTTCTATACGAAGCTGGAGACGACG
JMFF032B03+ GAAGCTGGAGACGACG
JMSF039B08+ TTTCTCGAGAATCGATTGCAAATATTTGCTTTGAGCTTCTATACGAAGCTGGAGACGACG
____________________________________________________________
consensus TTTCTCGAGAATCGATTGCAAATATTTGCTTTGAGCTTCTATACGAAGCTGGAGACGACG
. : . : . : . : . : . :
rJMFF032B03- TTGAACCTCTAGCTGCTTGTGCAATTTTCGTTGGACTTCCATCTGAGCTCGTAAAGCCTC
rJMSF039B08- TTGAACCTCTAGCTGCTTGTGCAATTTTCGTTGGACTTCCATCTGAGCTCGTAAAGCCTC
JMFF032B03+ TTGAACCTCTAGCTGCTTGTGCAATTTTCGTTGGACTTCCATCTGAGCTCGTAAAGCCTC
JMSF039B08+ TTGAACCTCTAGCTGCTTGTGCAATTTTCGTTGGACTTCCATCTGAGCTCGTAAAGCCTC
____________________________________________________________
consensus TTGAACCTCTAGCTGCTTGTGCAATTTTCGTTGGACTTCCATCTGAGCTCGTAAAGCCTC
. : . : . : . : . : . :
rJMFF032B03- GGTAACCTGGTAGCCATCGTTTAGTTCCTGGGCAATCATTCTAGACGAGCCCGATGTAGG
rJMSF039B08- GGTAACCTGGTAGCCATCGTTTAGTTCCTGGGCAATCATTCTAGACGAGCCCGATGTAGG
JMFF032B03+ GGTAACCTGGTAGCCATCGTTTAGTTCCTGGGCAATCATTCTAGACGAGCCCGATGTAGG
JMSF039B08+ GGTAACCTGGTAGCCATCGTTTAGTTCCTGGGCAATCATTCTAGACGAGCCCGATGTAGG
____________________________________________________________
consensus GGTAACCTGGTAGCCATCGTTTAGTTCCTGGGCAATCATTCTAGACGAGCCCGATGTAGG
. : . : . : . : . : . :
rJMFF032B03- GGAACCAATGTCCTGACTCTCCGCTACACATGATGCATCTTTAG
rJMSF039B08- GGAACCAATGTCCTGACTCTCCGCTACACATGATGCATCTTTAGAGTTGTCAGTTGCCTC
JMFF032B03+ GGAACCAATGTCCTGACTCTCCGCTACACATGATGCATCTTTAGAGTTGTCAGTTGCCTC
JMSF039B08+ GGAACCAATGTCCTGACTCTCCGCTACACATGATGCATCTTTAGAGTTGTCAGTTGCCTC
____________________________________________________________
consensus GGAACCAATGTCCTGACTCTCCGCTACACATGATGCATCTTTAGAGTTGTCAGTTGCCTC
. : . : . : . : . : . :
rJMSF039B08- CTTGGATGATTGCTTCCCGAGACGGTATTTCTGAAGGTGAGACTTTAAATGATATAAGGT
JMFF032B03+ CTTGGATGATTGCTTCCCGAGACGGTATTTCTGAAGGTGAGACTTTAAATGATATAAGGT
JMSF039B08+ CTTGGATGATTGCTTCCCGAGACGGTATTTCTGAAGGTGAGACTTTAAATGATATAAGGT
____________________________________________________________
consensus CTTGGATGATTGCTTCCCGAGACGGTATTTCTGAAGGTGAGACTTTAAATGATATAAGGT
. : . : . : . : . : . :
rJMSF039B08- CAGGCCTTTCACCCCCATTGTCCTCATAATTGATTTTGGTGTCGCTTTGTCGGGGCCGC
JMFF032B03+ CAGGCCTTTCACCCCCATTGTCCTCATAATTGATTTTGGTGTCGCTTTGTCGGGGCCGCC
JMSF039B08+ CAGGCCTTTCACCCCCATTGTCCTCATAATTGATTTTGGTGTCGCTTTGTCGGGGCCGCC
____________________________________________________________
consensus CAGGCCTTTCACCCCCATTGTCCTCATAATTGATTTTGGTGTCGCTTTGTCGGGGCCGCC
. : . : . : . : . : . :
JMFF032B03+ GAGCTGGGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCGGAGGTCCAGCGGAGGCGAGG
JMSF039B08+ GAGCTGGGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCGGAGGTCCAGCGGAGGCGAGG
____________________________________________________________
consensus GAGCTGGGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCGGAGGTCCAGCGGAGGCGAGG
. : . : . : . : . : . :
JMFF032B03+ CTTGGGATCGGCGGTGAGAACAAGACAAGCATCTCCGGGAAGGTTGGTTCCGTCCAAGGA
JMSF039B08+ CTTGGGATCGGCGGTGAGAACAAGACAAGCATCTCCGGGAAGGTTGGTTCCGTCCAAGGA
____________________________________________________________
consensus CTTGGGATCGGCGGTGAGAACAAGACAAGCATCTCCGGGAAGGTTGGTTCCGTCCAAGGA
. : . : . : . : . : . :
JMFF032B03+ CAGAGCTCCCTGGTGGTTGTGGTGGTTATAGTCGCCGCCGTCTAGCCCCAGACCCCGGAG
JMSF039B08+ CAGAGCTCCCTGGTGGTTGTGGTGGTTATAGTCGCCGCCGTCTAGCCCCAGACCCCGGAG
____________________________________________________________
consensus CAGAGCTCCCTGGTGGTTGTGGTGGTTATAGTCGCCGCCGTCTAGCCCCAGACCCCGGAG
. : . : . : . : . : . :
JMFF032B03+ AGGCACCGCCGAGTACATTTTTTCACGGCAGCCCGCAGTAGCAGACGACAACCCAAGCC
JMSF039B08+ AGGCACCGCCGAGTACATTTTTTCACGGCAGCCCGCAGTAGCAGACGACAACCCCAGCCC
____________________________________________________________
consensus AGGCACCGCCGAGTACATTTTTTCACGGCAGCCCGCAGTAGCAGACGACAACCCCAGCCC