Contig 012108:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006C18Sequence491012108 (4)ref|XP_009615358.1|2e-09PREDICTED: nephrocystin-3 [Nicotiana tomentosiformis]779002514 (4)ref|XP_011070356.1|5e-94PREDICTED: nephrocystin-3 [Sesamum indicum]
JMFF029K18Sequence247012108 (4)743002514 (4)ref|XP_011070356.1|1e-112PREDICTED: nephrocystin-3 [Sesamum indicum]
JMSF013M23Sequence254012108 (4)752002514 (4)ref|XP_011070356.1|2e-122PREDICTED: nephrocystin-3 [Sesamum indicum]
JMSF038G01Sequence611012108 (4)ref|XP_009615358.1|4e-33PREDICTED: nephrocystin-3 [Nicotiana tomentosiformis]874002514 (4)ref|XP_011070356.1|7e-138PREDICTED: nephrocystin-3 [Sesamum indicum]

Alignment

This contig is upended


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JMSF038G01+                                                            ACCCTCACCGG
                      ____________________________________________________________
consensus                                                              ACCCTCACCGG
 
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JMSF038G01+           ACGCAATCGTGTCCCGAGCGAGCTTCAACAGGAATGGCCCGAGATCCGGGTTGTCAAGCG
                      ____________________________________________________________
consensus             ACGCAATCGTGTCCCGAGCGAGCTTCAACAGGAATGGCCCGAGATCCGGGTTGTCAAGCG
 
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JMFF006C18+                                                    TTTCCGGAGCCCCGATCCG
JMSF038G01+           ACGATTCGTCGATAACAGCCTTCTCCGGCGGCGATTTCTTCTTTCCGGAGCCCCGATCCG
                      ____________________________________________________________
consensus             ACGATTCGTCGATAACAGCCTTCTCCGGCGGCGATTTCTTCTTTCCGGAGCCCCGATCCG
 
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JMFF006C18+           GCGACGGCTTGGCTCGTGAGGTGGACGGGGAAGGAGAGGGAGGACGCCGTGGAGCTGGCG
JMSF038G01+           GCGACGGCTTGGCTCGTGAGGTGGACGGGGAAGGAGAGGGAGGACGCCGTGGAGCTGGCG
                      ____________________________________________________________
consensus             GCGACGGCTTGGCTCGTGAGGTGGACGGGGAAGGAGAGGGAGGACGCCGTGGAGCTGGCG
 
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JMFF006C18+           AGCTGGGCTTCGTGTTAACATTCTCGGATCTACTCGAATTAGCTCCGATCTGGCCNTGAC
JMSF038G01+           AGCTGGGCTTCGTGTTAACATTCTCGGATCTACTCGAATTAGCTCCGATCTGGCCTTGAC
                      ____________________________________________________________
consensus             AGCTGGGCTTCGTGTTAACATTCTCGGATCTACTCGAATTAGCTCCGATCTGGCCTTGAC
 
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JMFF006C18+           TCTCGTCTGGAACTGTGATTCTCAATGGCGTAGCTTCCGGCGGCGTTTTAACTGAAACTA
JMSF038G01+           TCTCGTCTGGAACTGTGATTCTCAATGGCGTAGCTTCCGGCGGCGTTTTAACTGAAACTA
                      ____________________________________________________________
consensus             TCTCGTCTGGAACTGTGATTCTCAATGGCGTAGCTTCCGGCGGCGTTTTAACTGAAACTA
 
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JMSF013M23+                                                       CAAANCAAAAAAATCC
JMFF029K18+                                                       CAAAACAAAAAAATCC
JMFF006C18+           TTCCCGGCATTTCCTCAATTCACAACAGAAAAACAAAAACAAAACAAAACAAAAAAATCC
JMSF038G01+           TTCCCGGCATTTCCTCAATTCACAACAGAAAAACAAAAACAAAACAAAACAAAAAAATCC
                      ____________________________________________________________
consensus             TTCCCGGCATTTCCTCAATTCACAACAGAAAAACAAAAACAAAACAAAACAAAAAAATCC
 
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JMSF013M23+           CTCTTTCCCCTAAGAAAACCGATCGAATTTATCAAACCGATATCCTGTATTATACAATCG
JMFF029K18+           CTCTTTCCCCTAAGAAAACCGATCGAATTTATCAAACCGATATCCTGTATTATACAATCG
JMFF006C18+           CTCTTTCCCCTAAGAAAACCGATCGAATTTATCAAACCGATATCCTGTATTATACAATCG
JMSF038G01+           CTCTTTCCCCTAAGAAAACCGATCGAATTTATCAAACCGATATCCTGTATTATACAATCG
                      ____________________________________________________________
consensus             CTCTTTCCCCTAAGAAAACCGATCGAATTTATCAAACCGATATCCTGTATTATACAATCG
 
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JMSF013M23+           CCAAAAAGCGTTACCAATAAGTAATTAATGAGAGATTAAGAGACTGAATTATAGACTACA
JMFF029K18+           CCAAAAAGCGTTACCAATAAGTAATTAATGAGAGATTAAGAGANTGAATTATAGACTACA
JMFF006C18+           CCAAAAAGCGTTACCAATAAGTAATTAATGAGAGATTAAGAGACTGAATTATAGACTACA
JMSF038G01+           CCAAAAAGCGTTACCAATAAGTAATTAATGAGAGATTAAGAGACTGAATTATAGACTACA
                      ____________________________________________________________
consensus             CCAAAAAGCGTTACCAATAAGTAATTAATGAGAGATTAAGAGACTGAATTATAGACTACA
 
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JMSF013M23+           ACAGGCCACCATTCTCTACTGTTGAAGAACAGTTTAGAGCTTAGGAGATAGAGAGAGAGA
JMFF029K18+           ACAGGCCACCATTCTCTACTGNTGAAGAACAGTTTAGAGCTTAGGAGATAGAGAGAGAGA
JMFF006C18+           ACAGGCCACCATTCTCTACTGTTGAAGAACAGTTTAGAGCTTAGGAGATAGAGAGAGAGA
JMSF038G01+           ACAGGCCACCATTCTCTACTGTTGAAGAACAGTTTAGAGCTTAGGAGATAGAGAGAGAGA
                      ____________________________________________________________
consensus             ACAGGCCACCATTCTCTACTGTTGAAGAACAGTTTAGAGCTTAGGAGATAGAGAGAGAGA
 
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JMSF013M23+           GAGAGAGAGGGAGGAAGATGAAGTTCAGCTGAAGACGAGACTGGGGACC           
JMFF029K18+           GAGAGAGAGGGAGGAAGATGAAGTTCAGCTGAAGACGAGACTGGGGACC           
JMFF006C18+           GAGAGAGAGGGAGGAAGATGAAGTTCAGCTGAAGACGAGACTGGGGACC           
JMSF038G01+           GAGAGAGAGGGAGGAAGATGAAGTTCAGCTGAAGACGAGACTGGGGACCAGCGGTCAGTC
                      ____________________________________________________________
consensus             GAGAGAGAGGGAGGAAGATGAAGTTCAGCTGAAGACGAGACTGGGGACCAGCGGTCAGTC