Contig 012106:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038F03Sequence673012106 (2)ref|XP_007014830.1|4e-78KH domain-containing protein / zinc finger family protein isoform 1 [Theobroma 939012106 (2)emb|CDP17507.1|4e-121unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF038F03-                                                        CAAAACCTAATGCA
                      ____________________________________________________________
consensus                                                           CAAAACCTAATGCA
 
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rJMSF038F03-          ATTTTAACATTCCATCTATAATGAGATCAATCCCAGACAAAACAAAAATAAAAATAAAAA
                      ____________________________________________________________
consensus             ATTTTAACATTCCATCTATAATGAGATCAATCCCAGACAAAACAAAAATAAAAATAAAAA
 
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rJMSF038F03-          TAACAAACTACAGCCACATGATTATGCACCAAAGTACTACACATGAAACAATAATCCTGA
                      ____________________________________________________________
consensus             TAACAAACTACAGCCACATGATTATGCACCAAAGTACTACACATGAAACAATAATCCTGA
 
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rJMSF038F03-          ATTAAAACTCCAAAGCTCACATTCCACCGCCACGCAGCTCTTCGGCTCCATGTGCAAAGT
                      ____________________________________________________________
consensus             ATTAAAACTCCAAAGCTCACATTCCACCGCCACGCAGCTCTTCGGCTCCATGTGCAAAGT
 
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rJMSF038F03-          GGCACCTATCACCAAAAGTGCATGAGCCTTTCACAAAATTGTCACAAAGTTTCGTTTTAT
                      ____________________________________________________________
consensus             GGCACCTATCACCAAAAGTGCATGAGCCTTTCACAAAATTGTCACAAAGTTTCGTTTTAT
 
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rJMSF038F03-          AGTTGTTTGCTGGAGCAGAGCGTGGTCCTTTCATGGATTTTGCATTTGAACTGACTGTTG
                      ____________________________________________________________
consensus             AGTTGTTTGCTGGAGCAGAGCGTGGTCCTTTCATGGATTTTGCATTTGAACTGACTGTTG
 
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rJMSF038F03-          CTATAAGCTCCCGAACCATTTGACTGGCTTGCTGAATCTGGTCAATTGTACCTTCAAGTT
                      ____________________________________________________________
consensus             CTATAAGCTCCCGAACCATTTGACTGGCTTGCTGAATCTGGTCAATTGTACCTTCAAGTT
 
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rJMSF038F03-          CAATGTTCTTCAAGTTAGGATCAGATTCATTATCCCTTATTGAGAGCTTGGCTCCAGTCA
                      ____________________________________________________________
consensus             CAATGTTCTTCAAGTTAGGATCAGATTCATTATCCCTTATTGAGAGCTTGGCTCCAGTCA
 
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rJMSF038F03-          CACGGCATATCTGCTTTGAGTTTACACCACCTTTTCCGATTATGGCTCCAGACAGAGAAG
JMSF038F03+                                                          CCAGACAGAGAAG
                      ____________________________________________________________
consensus             CACGGCATATCTGCTTTGAGTTTACACCACCTTTTCCGATTATGGCTCCAGACAGAGAAG
 
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rJMSF038F03-          CATCGATACTTATCTTAGCTGTGGCAGATGAACCAAAGCTTGCAGCTGCTCCAAGCCCGG
JMSF038F03+           CATCGATACTTATCTTAGCTGTGGCAGATGAACCAAAGCTTGCAGCTGCTCCAAGCCCGG
                      ____________________________________________________________
consensus             CATCGATACTTATCTTAGCTGTGGCAGATGAACCAAAGCTTGCAGCTGCTCCAAGCCCGG
 
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rJMSF038F03-          CTTGACTTGGCTCAGGTCTACCAAACCTAGACGCATGACCCATTCCACGAGGGTCCTCAT
JMSF038F03+           CTTGACTTGGCTCAGGTCTACCAAACCTAGACGCATGACCCATTCCACGAGGGTCCTCAT
                      ____________________________________________________________
consensus             CTTGACTTGGCTCAGGTCTACCAAACCTAGACGCATGACCCATTCCACGAGGGTCCTCAT
 
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rJMSF038F03-          GAGCAGGAAGTGCTGACCTGCCAAGTTCCCACTCACCATGTGCAAAATGGCACTTGTCAC
JMSF038F03+           GAGCAGGAAGTGCTGACCTGCCAAGTTCCCACTCACCATGTGCAAAATGGCACTTGTCAC
                      ____________________________________________________________
consensus             GAGCAGGAAGTGCTGACCTGCCAAGTTCCCACTCACCATGTGCAAAATGGCACTTGTCAC
 
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rJMSF038F03-          CAAATTTGCAACCCTCAGCTGAGTTGTATTTGGTGCATAAACGAGTCTTAACACCTGTTG
JMSF038F03+           CAAATTTGCAACCCTCAGCTGAGTTGTATTTGGTGCATAAACGAGTCTTAACACCTGTTG
                      ____________________________________________________________
consensus             CAAATTTGCAACCCTCAGCTGAGTTGTATTTGGTGCATAAACGAGTCTTAACACCTGTTG
 
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rJMSF038F03-          GAGATGGTGCATCTGGGAAAGACGGCATGGCCATAGAGTTTCTAGTAGCCACAGGCAGAG
JMSF038F03+           GAGATGGTGCATCTGGGAAAGACGGCATGGCCATAGAGTTTCTAGTAGCCACAGGCAGAG
                      ____________________________________________________________
consensus             GAGATGGTGCATCTGGGAAAGACGGCATGGCCATAGAGTTTCTAGTAGCCACAGGCAGAG
 
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rJMSF038F03-          CAGGATTGTTGCCAAGCATTTGAGTCACAGATTTGAGCCCACCAGGCACATAATGCAAAA
JMSF038F03+           CAGGATTGTTGCCAAGCATTTGAGTCACAGATTTGAGCCCACCAGGCACATAATGCAAAA
                      ____________________________________________________________
consensus             CAGGATTGTTGCCAAGCATTTGAGTCACAGATTTGAGCCCACCAGGCACATAATGCAAAA
 
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rJMSF038F03-          AGTGGCAGCTCTCTCCAAATTGGCATCCTGAGGTACTGAAAAACTTTGTGCATGGCTTTG
JMSF038F03+           AGTGGCAGCTCTCTCCAAATTGGCATCCTGAGGTACTGAAAAACTTTGTGCATGGCTTTG
                      ____________________________________________________________
consensus             AGTGGCAGCTCTCTCCAAATTGGCATCCTGAGGTACTGAAAAACTTTGTGCATGGCTTTG
 
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rJMSF038F03-          A-TTGCTCCCTATACCACTTGAATAC                                  
JMSF038F03+           ATTTGCTCCCTATACCACTTGAATACTCTGATTCTTGTCTGGATTTCTTGTAGCCGCCAT
                      ____________________________________________________________
consensus             ATTTGCTCCCTATACCACTTGAATACTCTGATTCTTGTCTGGATTTCTTGTAGCCGCCAT
 
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JMSF038F03+           TGCCGTTCAAGCCGGCGTCGAATCTTCCTCTCTTCCGAGCTCCTCCGAACTCCATTGCGA
                      ____________________________________________________________
consensus             TGCCGTTCAAGCCGGCGTCGAATCTTCCTCTCTTCCGAGCTCCTCCGAACTCCATTGCGA
 
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JMSF038F03+           AAGAAATTAGTTGTAGGGTTGAAGATTCGGAGGAGAGAAAGTAGAGAGTTGTAGAGAGAG
                      ____________________________________________________________
consensus             AAGAAATTAGTTGTAGGGTTGAAGATTCGGAGGAGAGAAAGTAGAGAGTTGTAGAGAGAG
 
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JMSF038F03+           AATGGTGGCGTCGAAGAGAAGAAAGAGAAGGCCGGAAGAGAAGAGTATATCGGAACCCTC
                      ____________________________________________________________
consensus             AATGGTGGCGTCGAAGAGAAGAAAGAGAAGGCCGGAAGAGAAGAGTATATCGGAACCCTC