| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS037C03 | Sequence | 208 | 012105 (9) | ||||||||
| JMFS038H10 | Sequence | 597 | 012105 (9) | ref|XP_009805047.1| | 3e-21 | PREDICTED: phototropin-2 [Nicotiana sylvestris] ref|XP_009805048.1| PREDICTED: p | |||||
| JMFS076D04 | Sequence | 627 | 012105 (9) | ref|XP_009805047.1| | 7e-32 | PREDICTED: phototropin-2 [Nicotiana sylvestris] ref|XP_009805048.1| PREDICTED: p | |||||
| JMFS094E12 | Sequence | 614 | 012105 (9) | ref|XP_009805047.1| | 2e-41 | PREDICTED: phototropin-2 [Nicotiana sylvestris] ref|XP_009805048.1| PREDICTED: p | |||||
| JMFS106E12 | Sequence | 627 | 012105 (9) | ref|XP_009805047.1| | 7e-33 | PREDICTED: phototropin-2 [Nicotiana sylvestris] ref|XP_009805048.1| PREDICTED: p | |||||
| JMFS135G07 | Sequence | 632 | 012105 (9) | ref|XP_009805047.1| | 7e-33 | PREDICTED: phototropin-2 [Nicotiana sylvestris] ref|XP_009805048.1| PREDICTED: p | |||||
| JMFS157H12 | Sequence | 514 | 012105 (9) | ref|XP_009805047.1| | 8e-15 | PREDICTED: phototropin-2 [Nicotiana sylvestris] ref|XP_009805048.1| PREDICTED: p | |||||
| JMFS165E06 | Sequence | 602 | 012105 (9) | ref|XP_009805047.1| | 3e-37 | PREDICTED: phototropin-2 [Nicotiana sylvestris] ref|XP_009805048.1| PREDICTED: p | |||||
| JMSF038D11 | Sequence | 666 | 012105 (9) | ref|XP_009805047.1| | 7e-39 | PREDICTED: phototropin-2 [Nicotiana sylvestris] ref|XP_009805048.1| PREDICTED: p | 881 | 003002 (2) | ref|XP_006347791.1| | 2e-136 | PREDICTED: phototropin-2-like isoform X1 [Solanum tuberosum] ref|XP_006347792.1| |
This contig is upended
. : . : . : . : . : . :
JMFS094E12+ ACCAGTCATTGCAAAGAA
JMFS165E06+ A
JMSF038D11+ A
____________________________________________________________
consensus ACCAGTCATTGCAAAGAA
. : . : . : . : . : . :
JMFS094E12+ GCCAGTGCTGGCGTACACAATAGGGCAATCAGGCTTAGTAGCATCGGAGACGACGAATGT
JMFS076D04+ GCAATCAGGCTTAGTAGCATCGGAGACGACGAATGT
JMFS106E12+ AGGGCAATCAGGCTTAGTAGCATCGGAGACGACGAATGT
JMFS135G07+ TAGGGCAATCAGGCTTAGTAGCATCGGAGACGACGAATGT
JMFS165E06+ GCCAGTGCTGGCGTACACAATAGGGCAATCAGGCTTAGTAGCATCGGAGACGACGAATGT
JMSF038D11+ GCCAGTGCTGGCGTACACAATAGGGCAATCAGGCTTAGTAGCATCGGAGACGACGAATGT
____________________________________________________________
consensus GCCAGTGCTGGCGTACACAATAGGGCAATCAGGCTTAGTAGCATCGGAGACGACGAATGT
. : . : . : . : . : . :
JMFS094E12+ CTGCTGCAACGTTGATAAAGCGTCCTTCAGTTCTTGAGAAACGCGAGGCATATCCGATCC
JMFS076D04+ CTGCTGCAACGTTGATAAAGCGTCCTTCAGTTCTTGAGAAACGCGAGGCATATCCGATCC
JMFS106E12+ CTGCTGCAACGTTGATAAAGCGTCCTTCAGTTCTTGAGAAACGCGAGGCATATCCGATCC
JMFS135G07+ CTGCTGCAACGTTGATAAAGCGTCCTTCAGTTCTTGAGAAACGCGAGGCATATCCGATCC
JMFS165E06+ CTGCTGCAACGTTGATAAAGCGTCCTTCAGTTCTTGAGAAACGCGAGGCATATCCGATCC
JMFS038H10+ TGCTGCAACGTTGATANAGCGTCCTTCAGTTCTTGAGAAACGCGAGGCATATCCGATCC
JMSF038D11+ CTGCTGCAACGTTGATAAAGCGTCCTTCAGTTCTTGAGAAACGCGAGGCATATCCGATCC
____________________________________________________________
consensus CTGCTGCAACGTTGATAAAGCGTCCTTCAGTTCTTGAGAAACGCGAGGCATATCCGATCC
. : . : . : . : . : . :
JMFS094E12+ GTGACTTGAAGAATCAGTTGATAACTTCTCCAGTGAGGTTTTCCTCCTGCTCTCTGCTTC
JMFS076D04+ GTGACTTGAAGAATCAGTTGATAACTTCTCCAGTGAGGTTTTCCTCCTGCTCTCTGCTTC
JMFS106E12+ GTGACTTGAAGAATCAGTTGATAACTTCTCCAGTGAGGTTTTCCTCCTGCTCTCTGCTTC
JMFS135G07+ GTGACTTGAAGAATCAGTTGATAACTTCTCCAGTGAGGTTTTCCTCCTGCTCTCTGCTTC
JMFS165E06+ GTGACTTGAAGAATCAGTTGATAACTTCTCCAGTGAGGTTTTCCTCCTGCTCTCTGCTTC
JMFS157H12+ CAGTTGATAACTTCTCCAGTGAGGTTTTCCTCCTGCTCTCTGCTTC
JMFS038H10+ GTGACTTGAAGAATCAGTTGATAACTTCTCCAGTGAGGTTTTCCTCCTGCTCTCTGCTTC
JMSF038D11+ GTGACTTGAAGAATCAGTTGATAACTTCTCCAGTGAGGTTTTCCTCCTGCTCTCTGCTTC
____________________________________________________________
consensus GTGACTTGAAGAATCAGTTGATAACTTCTCCAGTGAGGTTTTCCTCCTGCTCTCTGCTTC
. : . : . : . : . : . :
JMFS094E12+ TCCAACTGAATTTTTGGGGAACGCATAGAAGCGACCTTCTTCCACGTCGTCTTTCTTCAT
JMFS076D04+ TCCAACTGAATTTTTGGGGAACGCATAGAAGCGACCTTCTTCCACGTCGTCTTTCTTCAT
JMFS106E12+ TCCAACTGAATTTTTGGGGAACGCATAGAAGCGACCTTCTTCCACGTCGTCTTTCTTCAT
JMFS135G07+ TCCAACTGAATTTTTGGGGAACGCATAGAAGCGACCTTCTTCCACGTCGTCTTTCTTCAT
JMFS165E06+ TCCAACTGAATTTTTGGGGAACGCATAGAAGCGACCTTCTTCCACGTCGTCTTTCTTCAT
JMFS157H12+ TCCAACTGAATTTTTGGGGAACGCATAGAAGCGACCTTCTTCCACGTCGTCTTTCTTCAT
JMFS038H10+ TCCAACTGAATTTTTGGGGAACGCATAGAAGCGACCTTCTTCCACGTCGTCTTTCTTCAT
JMSF038D11+ TCCAACTGAATTTTTGGGGAACGCATAGAAGCGACCTTCTTCCACGTCGTCTTTCTTCAT
____________________________________________________________
consensus TCCAACTGAATTTTTGGGGAACGCATAGAAGCGACCTTCTTCCACGTCGTCTTTCTTCAT
. : . : . : . : . : . :
JMFS094E12+ CACAGTCAATCCCCATTCCGCAGTCCTCTGTGCTATGGTGGCTTCTGTAGGGTCTCCATC
JMFS076D04+ CACAGTCAATCCCCATTCCGCAGTCCTCTGTGCTATGGTGGCTTCTGTAGGGTCTCCATC
JMFS106E12+ CACAGTCAATCCCCATTCCGCAGTCCTCTGTGCTATGGTGGCTTCTGTAGGGTCTCCATC
JMFS135G07+ CACAGTCAATCCCCATTCCGCAGTCCTCTGTGCTATGGTGGCTTCTGTAGGGTCTCCATC
JMFS165E06+ CACAGTCAATCCCCATTCCGCAGTCCTCTGTGCTATGGTGGCTTCTGTAGGGTCTCCATC
JMFS157H12+ CACAGTCAATCCCCATTCCGCAGTCCTCTGTGCTATGGTGGCTTCTGTAGGGTCTCCATC
JMFS038H10+ CACAGTCAATCCCCATTCCGCAGTCCTCTGTGCTATGGTGGCTTCTGTAGGGTCTCCATC
JMSF038D11+ CACAGTCAATCCCCATTCCGCAGTCCTCTGTGCTATGGTGGCTTCTGTAGGGTCTCCATC
____________________________________________________________
consensus CACAGTCAATCCCCATTCCGCAGTCCTCTGTGCTATGGTGGCTTCTGTAGGGTCTCCATC
. : . : . : . : . : . :
JMFS094E12+ CCCCCCATTAGCCTTCGCGGCGGTTCTAGAGTCGAAAGCCATCCACTTCCCAACTGGCTC
JMFS076D04+ CCCCCCATTAGCCTTCGCGGCGGTTCTAGAGTCGAAAGCCATCCACTTCCCAACTGGCTC
JMFS106E12+ CCCCCCATTAGCCTTCGCGGCGGTTCTAGAGTCGAAAGCCATCCACTTCCCAACTGGCTC
JMFS135G07+ CCCCCCATTAGCCTTCGCGGCGGTTCTAGAGTCGAAAGCCATCCACTTCCCAACTGGCTC
JMFS165E06+ CCCCCCATTAGCCTTCGCGGCGGTTCTAGAGTCGAAAGCCATCCACTTCCCAACTGGCTC
JMFS157H12+ CCCCCCATTAGCCTTCGCGGCGGTTCTAGAGTCGAAAGCCATCCACTTCCCAACTGGCTC
JMFS038H10+ CCCCCCATTAGCCTTCGCGGCGGTTCTAGAGTCGAAAGCCATCCACTTCCCAACTGGCTC
JMSF038D11+ CCCCCCATTAGCCTTCGCGGCGGTTCTAGAGTCGAAAGCCATCCACTTCCCAACTGGCTC
____________________________________________________________
consensus CCCCCCATTAGCCTTCGCGGCGGTTCTAGAGTCGAAAGCCATCCACTTCCCAACTGGCTC
. : . : . : . : . : . :
JMFS094E12+ CTTGTTGAGCGTTGAATTCCCAGATGGTCCTTGTCCGAGCACCTGCACATCGATATTCTG
JMFS076D04+ CTTGTTGAGCGTTGAATTCCCAGATGGTCCTTGTCCGAGCACCTGCACATCGATATTCTG
JMFS106E12+ CTTGTTGAGCGTTGAATTCCCAGATGGTCCTTGTCCGAGCACCTGCACATCGATATTCTG
JMFS135G07+ CTTGTTGAGCGTTGAATTCCCAGATGGTCCTTGTCCGAGCACCTGCACATCGATATTCTG
JMFS165E06+ CTTGTTGAGCGTTGAATTCCCAGATGGTCCTTGTCCGAGCACCTGCACATCGATATTCTG
JMFS157H12+ CTTGTTGAGCGTTGAATTCCCAGATGGTCCTTGTCCGAGCACCTGCACATCGATATTCTG
JMFS038H10+ CTTGTTGAGCGTTGAATTCCCAGATGGTCCTTGTCCGAGCACCTGCACATCGATATTCTG
JMSF038D11+ CTTGTTGAGCGTTGAATTCCCAGATGGTCCTTGTCCGAGCACCTGCACATCGATATTCTG
____________________________________________________________
consensus CTTGTTGAGCGTTGAATTCCCAGATGGTCCTTGTCCGAGCACCTGCACATCGATATTCTG
. : . : . : . : . : . :
JMFS094E12+ GATCCTGTTACTAACCGCCTCGCCGATTTGGCGCCTCAATTTGGGTTCAAACACTTGGAT
JMFS076D04+ GATCCTGTTACTAACCGCCTCGCCGATTTGGCGCCTCAATTTGGGTTCAAACACTTGGAT
JMFS106E12+ GATCCTGTTACTAACCGCCTCGCCGATTTGGCGCCTCAATTTGGGTTCAAACACTTGGAT
JMFS135G07+ GATCCTGTTACTAACCGCCTCGCCGATTTGGCGCCTCAATTTGGGTTCAAACACTTGGAT
JMFS165E06+ GATCCTGTTACTAACCGCCTCGCCGATTTGGCGCCTCAATTTGGGTTCAAACACTTGGAT
JMFS037C03+ AACCGCCTCGCCGATTTGGCGCCTCAATTTGGGTTCAAACACTTGGAT
JMFS157H12+ GATCCTGTTACTAACCGCCTCGCCGATTTGGCGCCTCAATTTGGGTTCAAACACTTGGAT
JMFS038H10+ GATCCTGTTACTAACCGCCTCGCCGATTTGGCGCCTCAATTTGGGTTCAAACACTTGGAT
JMSF038D11+ GATCCTGTTACTAACCGCCTCGCCGATTTGGCGCCTCAATTTGGGTTCAAACACTTGGAT
____________________________________________________________
consensus GATCCTGTTACTAACCGCCTCGCCGATTTGGCGCCTCAATTTGGGTTCAAACACTTGGAT
. : . : . : . : . : . :
JMFS094E12+ TGATCGTTTAGTAGCAGCACTTGATGACTCCATATATAAATAATATTATATTCACACACT
JMFS076D04+ TGATCGTTTAGTAGCAGCACTTGATGACTCCATATATAAATAATATTATATTCACACACT
JMFS106E12+ TGATCGTTTAGTAGCAGCACTTGATGACTCCATATATAAATAATATTATATTCACACACT
JMFS135G07+ TGATCGTTTAGTAGCAGCACTTGATGACTCCATATATAAATAATATTATATTCACACACT
JMFS165E06+ TGATCGTTTAGTAGCAGCACTTGATGACTCCATATATAAATAATATTATATTCACACACT
JMFS037C03+ TGATCGTTTAGAAACAGCACTTGATGACTCCATATATAAATAATATTATATTCACACACT
JMFS157H12+ TGATCGTTTAGTAGCAGCACTTGATGACTCCATATATAAATAATATTATATTCACACACT
JMFS038H10+ TGATCGTTTAGTAGCAGCACTTGATGACTCCATATATAAATAATATTATATTCACACACT
JMSF038D11+ TGATCGTTTAGTAGCAGCACTTGATGACTCCATATATAAATAATATTATATTCACACACT
____________________________________________________________
consensus TGATCGTTTAGTAGCAGCACTTGATGACTCCATATATAAATAATATTATATTCACACACT
. : . : . : . : . : . :
JMFS094E12+ CATATGTATCGCCGCGAAGAATTGGAAACACTTCAATTCAATTCCTGTGCTGCTAC
JMFS076D04+ CATATGTATCGCCGCGAAGAATTGGAAACACTTCAATTCAATTCCTGTGCTGCTACTGGA
JMFS106E12+ CATATGTATCGCCGCGAAGAATTGGAAACACTTCAATTCAATTCCTGTGCTGCTACTGGA
JMFS135G07+ CATATGTATCGCCGCGAAGAATTGGAAACACTTCAATTCAATTCCTGTGCTGCTACTGGA
JMFS165E06+ CATATGTATCGCCGCGAAGAATTGGAAACACTTCAATTCAATTCCTGTGCTGCTACTGGA
JMFS037C03+ CATATGTATCGCCGCGAAGAATTGGAAACACTTCAACTCAATTCCTGTGCTGATACAGGA
JMFS157H12+ CATATGTATCGCCGCGAAGAATTGGAAACACTTCAATTCAATTCCTGTGCTGCTACTGGA
JMFS038H10+ CATATGTATCGCCGCGAAGAATTGGAAACACTTCAATTCAATTCCTGTGCTGCTACTGGA
JMSF038D11+ CATATGTATCGCCGCGAAGAATTGGAAACACTTCAATTCAATTCCTGTGCTGCTACTGGA
____________________________________________________________
consensus CATATGTATCGCCGCGAAGAATTGGAAACACTTCAATTCAATTCCTGTGCTGCTACTGGA
. : . : . : . : . : . :
JMFS076D04+ CACATTAAATCAAGTGATCGAAGTAAACAGTACAGTTCCAAAATGAAACGA
JMFS106E12+ CACATTAAATCAAGTGATCGAAGTAAACAGTACAGTTCCAAAATGAAA
JMFS135G07+ CACATTAAATCAAGTGATCGAAGTAAACAGTACAGTTCCAAAATGAAACGA
JMFS165E06+ C
JMFS037C03+ CACATTAAATCAAGTGATCGAAGTAAACAGTACAGTTCCA
JMFS157H12+ CACATTAAATCAAGTGATCGAAGTAAACAGTACAGTTCCAAAATGAAA
JMFS038H10+ CACATTAAATCAAGTGATCGAAGTAAACAGTACAGTTCCAAAATGAAACGA
JMSF038D11+ CACATTAAATCAAGTGATCGAAGTAAACAGTACAGTTCCAAAATGAAACGAGTGTAGCTC
____________________________________________________________
consensus CACATTAAATCAAGTGATCGAAGTAAACAGTACAGTTCCAAAATGAAACGAGTGTAGCTC