Contig 012102:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028F18Sequence484012102 (4)654015935ref|XP_004249906.1|3e-89PREDICTED: BTB/POZ domain-containing protein At2g13690 [Solanum lycopersicum]
JMFF045L08Sequence624012102 (4)ref|XP_004249906.1|3e-13PREDICTED: BTB/POZ domain-containing protein At2g13690 [Solanum lycopersicum]555007213 (2)ref|XP_009621021.1|9e-64PREDICTED: BTB/POZ domain-containing protein At2g13690 [Nicotiana tomentosiform
JMFS032H04Sequence429012102 (4)ref|XP_009761422.1|5e-53PREDICTED: BTB/POZ domain-containing protein At2g13690 [Nicotiana sylvestris]
JMSF037G14Sequence638012102 (4)ref|XP_004249906.1|2e-08PREDICTED: BTB/POZ domain-containing protein At2g13690 [Solanum lycopersicum]724021541ref|XP_004249906.1|5e-85PREDICTED: BTB/POZ domain-containing protein At2g13690 [Solanum lycopersicum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032H04+                                           TAGTCAAAGTTTGAGAATTTGATGAGTT
                      ____________________________________________________________
consensus                                             TAGTCAAAGTTTGAGAATTTGATGAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032H04+           GTCTTCAGTATACAGCCTGCCCAAGATGTCTCTGGTGGTTACATCATCAAACTTGACCCT
                      ____________________________________________________________
consensus             GTCTTCAGTATACAGCCTGCCCAAGATGTCTCTGGTGGTTACATCATCAAACTTGACCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032H04+           ACCAAATAAGCTCCTCAGTTTCTCCTCTTCCTCTTCAGTCCAAGGCATGGCTTCTATGTA
                      ____________________________________________________________
consensus             ACCAAATAAGCTCCTCAGTTTCTCCTCTTCCTCTTCAGTCCAAGGCATGGCTTCTATGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032H04+           CTTTAAACATGACAAAATTCCCCTCACAAATTTAATGCCAGCTGAAACCTCCAGCACATC
                      ____________________________________________________________
consensus             CTTTAAACATGACAAAATTCCCCTCACAAATTTAATGCCAGCTGAAACCTCCAGCACATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032H04+           AATGGCGCGGCAAACCCCCATTCTGAGGAGTGCTCTAGGGATATCTTCCTCGAACATAAG
                      ____________________________________________________________
consensus             AATGGCGCGGCAAACCCCCATTCTGAGGAGTGCTCTAGGGATATCTTCCTCGAACATAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032H04+           CTCAATTGTCTGACGGAAAACGCCCAAATTATCCACATCCGGGACCTCAATCCGGCACAA
JMFF045L08+                                                                    CAA
                      ____________________________________________________________
consensus             CTCAATTGTCTGACGGAAAACGCCCAAATTATCCACATCCGGGACCTCAATCCGGCACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032H04+           ACCCCTAGACTTTTTCCGATAATCCGCAATCAAGTCGGCAAATACCAAGCTATTAGCAGC
JMFF045L08+           ACCCCTAGACTTTTTCCGATAATCCGCAATCAAGTCGGCAAATACCAAGCTATTAGCAGC
JMSF037G14+                                 TCCGCAATCAAGTCGGCAAATACCAAGCTATTAGCAGC
                      ____________________________________________________________
consensus             ACCCCTAGACTTTTTCCGATAATCCGCAATCAAGTCGGCAAATACCAAGCTATTAGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS032H04+           GAGAGCCTCGGCGGAGAGCTCCAGCACCAAGGCACCCCCAT                   
JMFF045L08+           GAGAGCCTCGGCGGAGAGCTCCAGCACCAAGGCACCCCCATCACTCCCCTTGAGACTCAA
JMSF037G14+           GAGAGCCTCGGCGGAGAGCTCCAGCACCAAGGCACCCCCATTACTCCCCTTGAGACTCAA
                      ____________________________________________________________
consensus             GAGAGCCTCGGCGGAGAGCTCCAGCACCAAGGCACCCCCATTACTCCCCTTGAGACTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045L08+           CCTCGCGTCGAAGATTCCCTCGGGACCGCACTCCTCCTCCGTCACGGCGCTAGCATTAGA
JMFF028F18+                              TCGGGACCGCACTCCTCCTCCGTCACGGCGCTAGCATTAGA
JMSF037G14+           CCTCGCGTCGAAGATTCCCTCGGGACCGCACTCCTCCTCCGTCACGGCGCTAGCATTAGA
                      ____________________________________________________________
consensus             CCTCGCGTCGAAGATTCCCTCGGGACCGCACTCCTCCTCCGTCACGGCGCTAGCATTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045L08+           GCCCTCGCGGCGGAGCGGCGAGGGCGACGCAGGAAGCTCAGCAGCGGAGCGGGAGGAATG
JMFF028F18+           GCCCTCGCGGCGGAGCGGCGAGGGCGACGCAGGAAGCTCAGCAGCGGAGCGGGAGGAATG
JMSF037G14+           GCCCTCGCGGCGGAGCGGCGAGGGCGACGCAGGAAGCTCAGCAGCGGAGCGGGAGGAATG
                      ____________________________________________________________
consensus             GCCCTCGCGGCGGAGCGGCGAGGGCGACGCAGGAAGCTCAGCAGCGGAGCGGGAGGAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045L08+           CAGGTGGAGCGGCAGAGGATTGGGGGGAGCTAGGGTTTCGTCGATAGGAGACACCCGGCC
JMFF028F18+           CAGGTGGAGCGGCAGAGGATTGGGGGGAGCTAGGGTTTCGTCGATAGGAGACACCCGGCC
JMSF037G14+           CAGGTGGAGCGGCAGAGGATTGGGGGGAGCTAGGGTTTCGTCGATAGGAGACACCCGGCC
                      ____________________________________________________________
consensus             CAGGTGGAGCGGCAGAGGATTGGGGGGAGCTAGGGTTTCGTCGATAGGAGACACCCGGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045L08+           CGGGGAAAGGATCCGGCGAGTAGTCCGAGTAACAAGAGTGTTAGTGTTGGATTTGCAAGA
JMFF028F18+           CGGGGAAAGGATCCGGCGAGTAGTCCGAGTAACAAGAGTGTTAGTGTTGGATTTGCAAGA
JMSF037G14+           CGGGGAAAGGATCCGGCGAGTAGTCCGAGTAACAAGAGTGTTAGTGTTGGATTTGCAAGA
                      ____________________________________________________________
consensus             CGGGGAAAGGATCCGGCGAGTAGTCCGAGTAACAAGAGTGTTAGTGTTGGATTTGCAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045L08+           GAGAGGGGAGGCGGGGAAGGAATGGGAAATGGAAGATGGGGATTTGGTCTTCTGAGAAAA
JMFF028F18+           GAGAGGGGAGGCGGGGAAGGAATGGGAAATGGAAGATGGGGATTTGGTCTTCTGAGAAAA
JMSF037G14+           GAGAGGGGAGGCGGGGAAGGAATGGGAAATGGAAGATGGGGATTTGGTCTTCTGAGAAAA
                      ____________________________________________________________
consensus             GAGAGGGGAGGCGGGGAAGGAATGGGAAATGGAAGATGGGGATTTGGTCTTCTGAGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045L08+           AGCAGCTGAAGTAGTAGTGGGATTGTCGGGGCTGTGAGGCGGCTCGGCGAAGCAGCACCA
JMFF028F18+           AGCAGCTGAAGTAGTAGTGGGATTGTCGGGGCTGTGAGGCGGCTCGGCGAAGCAGCACCA
JMSF037G14+           AGCAGCTGAAGTAGTAGTGGGATTGTCGGGGCTGTGAGGCGGCTCGGCGAAGCAGCACCA
                      ____________________________________________________________
consensus             AGCAGCTGAAGTAGTAGTGGGATTGTCGGGGCTGTGAGGCGGCTCGGCGAAGCAGCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045L08+           GGAGCGGCGGGGCTTGGGCGGCGGCGGGTCACGGCGGCGGTTGGGTTTGAGGCGCGTGGA
JMFF028F18+           GGAGCGGCGGGGCTTGGGCGGCGGCGGGTCACGGCGGCGGTTGGGTTTGAGGCGCGTGGA
JMSF037G14+           GGAGCGGCGGGGCTTGGGCGGCGGCGGGTCACGGCGGCGGTTGGGTTTGAGGCGCGTGGA
                      ____________________________________________________________
consensus             GGAGCGGCGGGGCTTGGGCGGCGGCGGGTCACGGCGGCGGTTGGGTTTGAGGCGCGTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045L08+           GTGAGACATTTGTACAAAGAAGCTAAAGCTATGGCGAAAGAGACAACAAACGGAAGAAAG
JMFF028F18+           GTGAGACATTTGTACAAAGAAGCTAAAGCTATGGCGAAAGAGACAACAAACGGAAGAAAG
JMSF037G14+           GTGAGACATTTGTACAAAGAAGCTAAAGCTATGGCGAAAGAGACAACAAACGGAAGAAAG
                      ____________________________________________________________
consensus             GTGAGACATTTGTACAAAGAAGCTAAAGCTATGGCGAAAGAGACAACAAACGGAAGAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045L08+           AAGAGAGAGCGAGGAGGAAGA                                       
JMFF028F18+           AAGAGAGAGCGAGGAGGAAGA                                       
JMSF037G14+           AAGAGAGAGCGAGGAGGAAGAAGAGGGAGAAACGTTAAGCAATTAGCAGAGAATTATATC
                      ____________________________________________________________
consensus             AAGAGAGAGCGAGGAGGAAGAAGAGGGAGAAACGTTAAGCAATTAGCAGAGAATTATATC