Contig 012101:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-                                                GATCTTGCTTTGTCCTTCACTA
                      ____________________________________________________________
consensus                                                   GATCTTGCTTTGTCCTTCACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-          ATTCAACCACTATATGATAACATTCATATTAATGTAATACCTCCAAGAATCAAAAAGCCC
rJMSF037A13-               ACCACTATATGATAACATTCATATTAATGTAATACCTCCAAGAATCAAAAAGCCC
                      ____________________________________________________________
consensus             ATTCAACCACTATATGATAACATTCATATTAATGTAATACCTCCAAGAATCAAAAAGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-          TCATAAGTAAAAATTTCTACCAGTGCTATCCAATATTCAAAACCATAAACAGACAAACAT
rJMSF037A13-          TCATAAGTAAAAATTTCTACCAGTGCTATCCAATATTCAAAACCATAAACAGACAAACAT
                      ____________________________________________________________
consensus             TCATAAGTAAAAATTTCTACCAGTGCTATCCAATATTCAAAACCATAAACAGACAAACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-          GCTTTGTTGCTTGTGACATAAAGATTATACCACATATCACACATCAAAATGTTTCTCAAC
rJMSF037A13-          GCTTTGTTGCTTGTGACATAAAGATTATACCACATATCACACATCAAAATGTTTCTCAAC
rJMSF019F01-          GCTTTGTTGCTTGTGACATAAAGATTATACCACATATCACACATCAAAATGTTTCTCAAC
                      ____________________________________________________________
consensus             GCTTTGTTGCTTGTGACATAAAGATTATACCACATATCACACATCAAAATGTTTCTCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-          TGGCAAAACTAGGCTGGAAATGAAGCCAAAAACTCGTCTTGCTCACCATTTTTCACTTTG
rJMSF037A13-          TGGCAAAACTAGGCTGGAAATGAAGCCAAAAACTCGTCTTGCTCACCATTTTTCACTTTG
rJMSF019F01-          TGGCAAAACTAGGCTGGAAATGAAGCCAAAAACTCGTCTTGCTCACCATTTTTCACTTTG
                      ____________________________________________________________
consensus             TGGCAAAACTAGGCTGGAAATGAAGCCAAAAACTCGTCTTGCTCACCATTTTTCACTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-          CTGCGGCGAAAAGCTTACTGGCAATCATGGTGTTATCAAGAAATGATGAATAAGGGTGAC
rJMSF037A13-          CTGCGGCGAAAAGCTTACTGGCAATCATGGTGTTATCAAGAAATGATGAATAAGGGTGAC
rJMSF019F01-          CTGCGGCGAAAAGCTTACTGGCAATCATGGTGTTATCAAGAAATGATGAATAAGGGTGAC
                      ____________________________________________________________
consensus             CTGCGGCGAAAAGCTTACTGGCAATCATGGTGTTATCAAGAAATGATGAATAAGGGTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-          CCTCGGGTAAGAGCTCGCGATACATCTGGAAATGCTTCTTGGCTTCTTTATCTTTCCCCA
rJMSF037A13-          CCTCGGGTAAGAGCTCGCGATACATCTGGAAATGCTTCTTGGCTTCTTTATCTTTCCCCA
rJMSF019F01-          CCTCGGGTAAGAGCTCGCGATACATCTGGAAATGCTTCTTGGCTTCTTTATCTTTCCCCA
                      ____________________________________________________________
consensus             CCTCGGGTAAGAGCTCGCGATACATCTGGAAATGCTTCTTGGCTTCTTTATCTTTCCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-          ACATTGTGTACATTATTGCTTGATAGAGATATGGCCTGAAATCTGTGGGTTCCTCCTTTA
rJMSF037A13-          ACATTGTGTACATTATTGCTTGATAGAGATATGGCCTGAAATCTGTGGGTTCCTCCTTTA
rJMSF019F01-          ACATTGTGTACATTATTGCTTGATAGAGATATGGCCTGAAATCTGTGGGTTCCTCCTTTA
                      ____________________________________________________________
consensus             ACATTGTGTACATTATTGCTTGATAGAGATATGGCCTGAAATCTGTGGGTTCCTCCTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-          CCAATTCTTGATAGACTTTCAATGCCTCTTCATAGTCATATTCAATAGCCCGAATTTGTG
rJMSF037A13-          CCAATTCTTGATAGACTTTCAATGCCTCTTCATAGTCATATTCAATAGCCCGAATTTGTG
rJMSF019F01-          CCAATTCTTGATAGACTTTCAATGCCTCTTCATAGTCATATTCAATAGCCCGAATTTGTG
                      ____________________________________________________________
consensus             CCAATTCTTGATAGACTTTCAATGCCTCTTCATAGTCATATTCAATAGCCCGAATTTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-          CCAATAAGAGCTTGAAATCTCTCAATTGGCCCTTTTTATCCTCAGTTTTGCATAGTTTCA
rJMSF037A13-          CCAATAAGAGCTTGAAATCTCTCAATTGGCCCTTTTTATCCTCAGTTTTGCATAGTTTCA
rJMSF019F01-          CCAATAAGAGCTTGAAATCTCTCAATTGGCCCTTTTTATCCTCAGTTTTGCATAGTTTCA
                      ____________________________________________________________
consensus             CCAATAAGAGCTTGAAATCTCTCAATTGGCCCTTTTTATCCTCAGTTTTGCATAGTTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-          TTGCTTTCAGAATCCTCTCCTCAATTCCCTTCAACTCCTCAACTTGATCGTCCTCCGAAA
rJMSF037A13-          TTGCTTTCAGAATCCTCTCCTCAATTCCCTTCAACTCCTCAACTTGATCGTCCTCCGAAA
rJMSF019F01-          TTGCTTTCAGAATCCTCTCCTCAATTCCCTTCAACTCCTCAACTTGATCGTCCTCCGAAA
                      ____________________________________________________________
consensus             TTGCTTTCAGAATCCTCTCCTCAATTCCCTTCAACTCCTCAACTTGATCGTCCTCCGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030B09-          CCGCCGTTATAAGCCCGTGATAA                                     
rJMSF037A13-          CCGCCGTTATAAGCCCGTGATAAGCCTCGACCAGTAAAGGCTCCTTCGACAGAATCTCAT
rJMSF019F01-          CCGCCGTTATAAGCCCGTGATAAGCCTCGACCAGTAAAGGCTCCTTCGACAGAATCTCAT
                      ____________________________________________________________
consensus             CCGCCGTTATAAGCCCGTGATAAGCCTCGACCAGTAAAGGCTCCTTCGACAGAATCTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A13-          TGAATCCCCTTCTCGCCGTTTCAAACTCTCCGGTGAGAACAAACAAGT            
rJMSF019F01-          TGAATCCCCTTCTCGCCGTTTCAAACTCTCCGGTGAGAACAAACAAGTGGTTTCTCAACA
                      ____________________________________________________________
consensus             TGAATCCCCTTCTCGCCGTTTCAAACTCTCCGGTGAGAACAAACAAGTGGTTTCTCAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019F01-          GCGGCCACTCTGTCTCGCTCGGTTCCAGCTCCATCAACCTGTTCACGATGCTAATGGCGT
JMSF037A13+                              CGGTTCCAGCTCCATCAACCTGTTCACGATGCTAATGGCGT
                      ____________________________________________________________
consensus             GCGGCCACTCTGTCTCGCTCGGTTCCAGCTCCATCAACCTGTTCACGATGCTAATGGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019F01-          CGCCGATGTTCTGGTTCTGAATCTTACTCTCCACTAGGCTTTGTAACGCC          
JMSF037A13+           CGCCGATGTTCTGGTTCTGAATCTTACTCTCCACTAGGCTTTGTAACGCCTCGACGTCGT
                      ____________________________________________________________
consensus             CGCCGATGTTCTGGTTCTGAATCTTACTCTCCACTAGGCTTTGTAACGCCTCGACGTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037A13+           TCGGGTTCGCAGCCAAACGTTCTTGGAGAGCCTTCTCGGTTTCCGCGTCGGAAACCGCCG
                      ____________________________________________________________
consensus             TCGGGTTCGCAGCCAAACGTTCTTGGAGAGCCTTCTCGGTTTCCGCGTCGGAAACCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037A13+           CCTCTGCGGTGGCCGGAGCTGAAACCGGGGCTGCAATGGAGGGGTTCACTCTGAGGCTAA
                      ____________________________________________________________
consensus             CCTCTGCGGTGGCCGGAGCTGAAACCGGGGCTGCAATGGAGGGGTTCACTCTGAGGCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030B09+                               GCGGCCGCGACGGTGGCGACGACGGCACAAGAAAAGGGTG
JMSF037A13+           ATCTGCCGAGGAAAACCGCGGCGGCCGCGACGGTGGCGACGACGGCACAAGAAAAGGGTG
                      ____________________________________________________________
consensus             ATCTGCCGAGGAAAACCGCGGCGGCCGCGACGGTGGCGACGACGGCACAAGAAAAGGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030B09+           TTNGAAAATGGGATTGGGTTAGTGTTTCGAGAATTCCCGGGGATGATTTTGCGGTTTCTT
JMSF037A13+           TTTGAAAATGGGATTGGGTTAGTGTTTCGAGAATTCCCGGGGATGATTTTGCGGTTTCTT
                      ____________________________________________________________
consensus             TTTGAAAATGGGATTGGGTTAGTGTTTCGAGAATTCCCGGGGATGATTTTGCGGTTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F01+             TTTGCGGGTTTAGGAACGGAGAACTCCGGCGAGAATGACGACGAGGCTTTGATGGGCA
JMFF030B09+           GCTTTGCGGGTTTAGGAACGGAGAACTCCGGCGAGAATGACGACGAGGCTTTGATGGGCA
JMSF037A13+           GCTTTGCGGGTTTAGGAACGGAGAACTCCGGCGAGAATGACGACGAGGCTTTGATGGGCA
                      ____________________________________________________________
consensus             GCTTTGCGGGTTTAGGAACGGAGAACTCCGGCGAGAATGACGACGAGGCTTTGATGGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F01+           CATGCTGCGGCTGAGTTGTGAAGGAGAGAGACGAAAGGGGTCGGACTAGAACTGGACGGT
JMFF030B09+           CATGCTGCGGCTGAGTTGTGAAGGAGAGAGACGAAAGGGGTCGGACTAGAACTGGACGGT
JMSF037A13+           CATGCTGCGGCTGAGTTGTGAAGGAGAGAGACGAAAGGGGTCGGACTAGAACTGGACGGT
                      ____________________________________________________________
consensus             CATGCTGCGGCTGAGTTGTGAAGGAGAGAGACGAAAGGGGTCGGACTAGAACTGGACGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F01+           GGTTATTGAGAGAAGGAAGAAAGTTAAGGTTTGGTTTTGCAGAGAAATGGGTGAAGGCGT
JMFF030B09+           GGTTATTGAGAGAAGGAAGAAAGTTAAGGTTTGGTTTTGCAGAGAAATGGGTGAAGGCGT
JMSF037A13+           GGTTATTGAGAGAAGGAAGAAAGTTAAGGTTTGGTTTTGCAGAGAAATGGGTGAAGGCGT
                      ____________________________________________________________
consensus             GGTTATTGAGAGAAGGAAGAAAGTTAAGGTTTGGTTTTGCAGAGAAATGGGTGAAGGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F01+           TCATGGCGACAGAAAGTTACAGAGGATACGACTTACGAGTGCTCCAAAACCCCGAGGATT
JMFF030B09+           TCATGGCGACAGAAAGTTACAGAGGATACGACTTACGAGTGCTCCAAAACCCCGAGGATT
JMSF037A13+           TCATGGCGACAGAAAGTTACAGAGGATACGACTTACGAGTGCTCCAAAACCCCGAGGATT
                      ____________________________________________________________
consensus             TCATGGCGACAGAAAGTTACAGAGGATACGACTTACGAGTGCTCCAAAACCCCGAGGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019F01+           GAGGAAGACGACGATAATGGAGGGTTTGATTCAACCC                       
JMFF030B09+           GAGGAAGACGACGATAATGGAGGGTTTGATTCAACCCGAAATCAGAAAAGAC        
JMSF037A13+           GAGGAAGACGACGATAATGGAGGGTTTGATTCAACCCGAAATCAGAAAAGACGGCCCATC
                      ____________________________________________________________
consensus             GAGGAAGACGACGATAATGGAGGGTTTGATTCAACCCGAAATCAGAAAAGACGGCCCATC