Contig 012096:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF041J07-                                 AGCTTGCTACATCATTATATGAAAACGTACAAAGAAA
rJMSF035J12-          CTCATCCTATTAACACTTTCTCCAGCTTGCTACATCATTATATGAAAACGTACAAAGAAA
                      ____________________________________________________________
consensus             CTCATCCTATTAACACTTTCTCCAGCTTGCTACATCATTATATGAAAACGTACAAAGAAA
 
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rJMSF041J07-          AGGAATAAGGAAAAGTGAATACAGCAACGAACACAACAATTTCAAAACATAAAAATAAAA
rJMSF035J12-          AGGAATAAGGAAAAGTGAATACAGCAACGAACACAACAATTTCAAAACATAAAAATAAAA
                      ____________________________________________________________
consensus             AGGAATAAGGAAAAGTGAATACAGCAACGAACACAACAATTTCAAAACATAAAAATAAAA
 
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rJMSF041J07-          AACTGGGCCAAATAGAACTTGCCTTAATGTTCCTAATAGAGTAAAAACTAGGAAGTAATC
rJMSF035J12-          AACTGGGCCAAATAGAACTTGCCTTAATGTTCCTAATAGAGTAAAAACTAGGAAGTAATC
                      ____________________________________________________________
consensus             AACTGGGCCAAATAGAACTTGCCTTAATGTTCCTAATAGAGTAAAAACTAGGAAGTAATC
 
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rJMSF041J07-          CTGACAAAAGAAGCTTTCAAGAACTGGCTTTCATTTTCAATCTGTAGCAGCAAGAGCTGA
rJMSF035J12-          CTGACAAAAGAAGCTTTCAAGAACTGGCTTTCATTTTCAATCTGTAGCAGCAAGAGCTGA
                      ____________________________________________________________
consensus             CTGACAAAAGAAGCTTTCAAGAACTGGCTTTCATTTTCAATCTGTAGCAGCAAGAGCTGA
 
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rJMSF041J07-          CTGCAACACATCTTCAAGGTACTTCTCAGCATCACCATACTGCCTTTTCTTCTCCTCAAT
rJMSF035J12-          CTGCAACACATCTTCAAGGTACTTCTCAGCATCACCATACTGCCTTTTCTTCTCCTCAAT
                      ____________________________________________________________
consensus             CTGCAACACATCTTCAAGGTACTTCTCAGCATCACCATACTGCCTTTTCTTCTCCTCAAT
 
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rJMSF041J07-          TGCCAATGCAGCCAAGGCTTTATCCGGAGGCAGGTCTTGGTAGCTTCTCAAAGTATCAAG
rJMSF035J12-          TGCCAATGCAGCCAAGGCTTTATCCGGAGGCAGGTCTTGGTAGCTTCTCAAAGTATCAAG
                      ____________________________________________________________
consensus             TGCCAATGCAGCCAAGGCTTTATCCGGAGGCAGGTCTTGGTAGCTTCTCAAAGTATCAAG
 
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rJMSF041J07-          AATAGGTTTTGTTTTGTTCTCCAAATCCTTTCTGTGCTCCGCCATTTCAACCAGCACTCC
rJMSF035J12-          AATAGGTTTTGTTTTGTTCTCCAAATCCTTTCTGTGCTCCGCCATTTCAACCAGCACTCC
                      ____________________________________________________________
consensus             AATAGGTTTTGTTTTGTTCTCCAAATCCTTTCTGTGCTCCGCCATTTCAACCAGCACTCC
 
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rJMSF041J07-          ATGACTTATCTCTGGGGTATAGCCAACACGGTTGAGCATTGCCTTGTAATTAGAATACTG
rJMSF035J12-          ATGACTTATCTCTGGGGTATAGCCAACACGGTTGAGCATTGCCTTGTAATTAGAATACTG
JMSF041J07+                       TGGGGTATAGCCAACACGGTTGAGCATTGCCTTGTAATTAGAATACTG
                      ____________________________________________________________
consensus             ATGACTTATCTCTGGGGTATAGCCAACACGGTTGAGCATTGCCTTGTAATTAGAATACTG
 
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rJMSF041J07-          TTGAAAATATTGCCTCTCTTTGGAATCCATAATTGTCAGGTTCGTTTTCCAATTTTCCAT
rJMSF035J12-          TTGAAAATTTTGCCTCTCTTTGGAATCCATAATTGTCAGGTTCGTTTTCCAATTTTCCAT
JMSF041J07+           TTGAAAATATTGCCTCTCTTTGGAATCCATAATTGTCAGGTTCGTTTTCCAATTTTCCAT
                      ____________________________________________________________
consensus             TTGAAAATATTGCCTCTCTTTGGAATCCATAATTGTCAGGTTCGTTTTCCAATTTTCCAT
 
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rJMSF041J07-          TTGTGCTTCACAAGGAGCAATGTCATCTTCAAGCTGAGCAAGCGTTCTTTTCAAGTAAGT
rJMSF035J12-          TTGTGCTTCACAAGGAGCAATGTCATCTTCAAGCTGAGCAAGCGTTCTTTTCAAGTAAGT
JMSF041J07+           TTGTGCTTCACAAGGAGCAATGTCATCTTCAAGCTGAGCAAGCGTTCTTTTCAAGTAAGT
JMSF035J12+                                                                 GTAAGT
                      ____________________________________________________________
consensus             TTGTGCTTCACAAGGAGCAATGTCATCTTCAAGCTGAGCAAGCGTTCTTTTCAAGTAAGT
 
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rJMSF041J07-          CAATCTTGCTATTGCCTTCCGAGTGTAATCAAGAA                         
rJMSF035J12-          CAATCTTGCTATTGCCTTCCGAGTGTAATCAAGAAGAACTTTAGATTCCTGTTGCACTTT
JMSF041J07+           CAATCTTGCTATTGCCTTCCGAGTGTAATCAAGAAGAACTTTAGATTCCTGTTGCACTTT
JMSF035J12+           CAATCTTGCTATTGCCTTCCGAGTGTAATCAAGAAGAACTTTAGATTCCTGTTGCACTTT
                      ____________________________________________________________
consensus             CAATCTTGCTATTGCCTTCCGAGTGTAATCAAGAAGAACTTTAGATTCCTGTTGCACTTT
 
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rJMSF035J12-          AGCCCTCTTCTCTTCTACTGCTGTTTTCCTAAGAGAAAGATCTGCCATTGCTACAAGAAA
JMSF041J07+           AGCCCTCTTCTCTTCTACTGCTGTTTTCCTAAGAGAAAGATCTGCCATTGCTACAAGAAA
JMSF035J12+           AGCCCTCTTCTCTTCTACTGCTGTTTTCCTAAGAGAAAGATCTGCCATTGCTACAAGAAA
                      ____________________________________________________________
consensus             AGCCCTCTTCTCTTCTACTGCTGTTTTCCTAAGAGAAAGATCTGCCATTGCTACAAGAAA
 
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rJMSF035J12-          GCTACTCAATTCAGTG                                            
JMSF041J07+           GCTACTCAATTCAGTGTCTCTAATATTCAACAAATTCGCCATACTGGCAAGCACTTGTGC
JMSF035J12+           GCTACTCAATTCAGTGTCTCTAATATTCAACAAATTCGCCATACTGGCAAGCACTTGTGC
                      ____________________________________________________________
consensus             GCTACTCAATTCAGTGTCTCTAATATTCAACAAATTCGCCATACTGGCAAGCACTTGTGC
 
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JMSF041J07+           AGATGAAACCACATTCGGCGTCAAACTCTCTTGGGCCAATCCCACATTTTCTAATACCTC
JMSF035J12+           AGATGAAACCACATTCGGCGTCAAACTCTCTTGGGCCAATCCCACATTTTCTAATACCTC
                      ____________________________________________________________
consensus             AGATGAAACCACATTCGGCGTCAAACTCTCTTGGGCCAATCCCACATTTTCTAATACCTC
 
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JMSF041J07+           TCTTATCCTCGCAGCTTGAGACCTATACTCGGCAGCTTTTCGACGGAAATCATTGGCTAC
JMSF035J12+           TCTTATCCTCGCAGCTTGAGACCTATACTCGGCAGCTTTTTGACGGAAATCATTGGCTAC
                      ____________________________________________________________
consensus             TCTTATCCTCGCAGCTTGAGACCTATACTCGGCAGCTTTTTGACGGAAATCATTGGCTAC
 
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JMSF041J07+           GATCCCTGCGGCTTGATTTTTGGCCTGAGAAATGGTCGCAATATTGTGCAAATGCGCAAC
JMSF035J12+           GATCCCTGCGGCTTGATTTTTGGCCTGAGAAATGGTCGCAATATTGTGCAAATGCGCAAC
                      ____________________________________________________________
consensus             GATCCCTGCGGCTTGATTTTTGGCCTGAGAAATGGTCGCAATATTGTGCAAATGCGCAAC
 
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JMSF041J07+           GCTTCGTGCAGTGTACTCGAAATCAGGGACGTCCTTCCCAACAGCGTCGAATTGGGAAAC
JMSF035J12+           GCTTCGTGCAGTGTACTCGAAATCAGGGACGTCCTTCCCAACAGCGTCGAATTGGGAAAC
                      ____________________________________________________________
consensus             GCTTCGTGCAGTGTACTCGAAATCAGGGACGTCCTTCCCAACAGCGTCGAATTGGGAAAC
 
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JMSF041J07+           TAGCCATGATTTTACCTCTGCGATTCGGCTCGCATCTAAAGCACTACTCCCCTTCGTTGT
JMSF035J12+           TAGCCATGATTTTACCTCTGCGATTCGGCTCGCATCTAAAGCACTACTCCCCTTCGTTGT
                      ____________________________________________________________
consensus             TAGCCATGATTTTACCTCTGCGATTCGGCTCGCATCTAAAGCACTACTCCCCTTCGTTGT
 
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JMSF041J07+           TTCCGTCGATACTGAAGGATCGCTTCCGCCCAACATTTCACTCATCTTGCTAAAATGCAG
JMSF035J12+           TTCCGTCGATACTGAAGGATCGCTTCCGCCCAACATTTCACTCATCTTGCTAAAATGCAG
                      ____________________________________________________________
consensus             TTCCGTCGATACTGAAGGATCGCTTCCGCCCAACATTTCACTCATCTTGCTAAAATGCAG
 
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JMSF041J07+           ACAGATAAGTTATATGTAATTGCTTAGAAAAAGAAATCACAACGCCGGTCTTCCCCGCAA
JMSF035J12+           ACAGATAAGTTATATGTAATTGCTTAGAAAAAGAAATCACAACGCCGGTCTTCCCCGCAA
                      ____________________________________________________________
consensus             ACAGATAAGTTATATGTAATTGCTTAGAAAAAGAAATCACAACGCCGGTCTTCCCCGCAA
 
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JMSF041J07+           AAACTTCAATTTTCTTTCTGTTCGATCGCCGGCGAAGCTGAGGGTCGAGTGTC       
JMSF035J12+           AAACTTCAATTTTCTTTCTGTTCGATCGCCGGCGAAGCTGAGGGTCGAGTGTCTACTTCC
                      ____________________________________________________________
consensus             AAACTTCAATTTTCTTTCTGTTCGATCGCCGGCGAAGCTGAGGGTCGAGTGTCTACTTCC