| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020H11 | Sequence | 466 | 012091 (9) | 736 | 013699 (8) | ref|XP_009601214.1| | 1e-82 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana tomentosiformis] | |||
| JMSF010K03 | Sequence | 360 | 012091 (9) | 756 | 013699 (8) | ref|XP_009601214.1| | 4e-90 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana tomentosiformis] | |||
| JMSF025P16 | Sequence | 693 | 012091 (9) | ref|XP_009783985.1| | 2e-52 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana sylvestris] | 781 | 013699 (8) | ref|XP_009601214.1| | 4e-87 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana tomentosiformis] |
| JMSF031H15 | Sequence | 671 | 012091 (9) | ref|XP_009783985.1| | 1e-47 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana sylvestris] | 694 | 013699 (8) | ref|XP_009601214.1| | 2e-73 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana tomentosiformis] |
| JMSF033O09 | Sequence | 700 | 012091 (9) | ref|XP_009783985.1| | 3e-47 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana sylvestris] | 753 | 013699 (8) | ref|XP_009601214.1| | 1e-93 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana tomentosiformis] |
| JMSF035B23 | Sequence | 672 | 012091 (9) | gb|EYU42561.1| | 3e-41 | hypothetical protein MIMGU_mgv1a002602mg [Erythranthe guttata] | 628 | 009281 (6) | ref|XP_009791062.1| | 8e-70 | PREDICTED: mRNA turnover protein 4 homolog [Nicotiana sylvestris] |
| JMSF039D15 | Sequence | 711 | 012091 (9) | ref|XP_009783985.1| | 8e-54 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana sylvestris] | 771 | 013699 (8) | ref|XP_009601214.1| | 2e-90 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana tomentosiformis] |
| JMSF049E19 | Sequence | 711 | 012091 (9) | ref|XP_009783985.1| | 3e-47 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana sylvestris] | 750 | 013699 (8) | ref|XP_009601214.1| | 5e-90 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana tomentosiformis] |
| JMSF051F15 | Sequence | 701 | 012091 (9) | ref|XP_009783985.1| | 9e-55 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana sylvestris] | 786 | 013699 (8) | ref|XP_009601214.1| | 2e-94 | PREDICTED: protein EXECUTER 1, chloroplastic [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF025P16+ AATAAACCTGCCCA
JMSF051F15+ GTCCTGCCAATAAACCTGCCCA
____________________________________________________________
consensus GTCCTGCCAATAAACCTGCCCA
. : . : . : . : . : . :
JMSF025P16+ TCCCAGGAGTTATACGTACTAATCTACCAAATAGATCACCAGAATCCTTTGAATAGCCAA
JMSF051F15+ TCCCAGGAGTTATACGTACTAATCTACCAAATAGATCACCAGAATCCTTTGAATAGCCAA
JMSF039D15+ GTTATACGTACTNATCTACCAAATAGATCACCAGAATCCTTTGAATAGCCAA
JMSF033O09+ TATACGTACTAATCTACCAAATAGATCACCAGAATCCTTTGAATAGCCAA
JMSF031H15+ GAATAGCCAA
JMSF049E19+ GTTATACGTACTAATCTACCAAATAGATCACCAGAATCCTTTGAATAGCCAA
JMSF035B23+ TTGAATAGCCAA
____________________________________________________________
consensus TCCCAGGAGTTATACGTACTAATCTACCAAATAGATCACCAGAATCCTTTGAATAGCCAA
. : . : . : . : . : . :
JMSF025P16+ CCCACCAACCAACCAGACCACTTCCAGTGCTTCGGCATAATCTTGAAGCATCATGGTAAC
JMSF051F15+ CCCACCAACCAACCAGACCACTTCCAGTGCTTCGGCATAATCTTGAAGCATCATGGTAAC
JMSF039D15+ CCCACCAACCAACCAGACCACTTCCAGTGCTTCGGCATAATCTTGAAGCATCATGGTAAC
JMSF033O09+ CCCACCAACCAACCAGACCACTTCCAGTGCTTCGGCATAATCTTGAAGCATCATGGTAAC
JMSF031H15+ CCCACCAACCAACCAGACCACTTCCAGTGCTTCGGCATAATCTTGAAGCATCATGGTAAC
JMSF049E19+ CCCACCAACCAACCAGACCACTTCCAGTGCTTCGGCATAATCTTGAAGCATCATGGTAAC
JMSF035B23+ CCCACCAACCAACCAGACCACTTCCAGTGCTTCGGCATAATCTTGAAGCATCATGGTAAC
____________________________________________________________
consensus CCCACCAACCAACCAGACCACTTCCAGTGCTTCGGCATAATCTTGAAGCATCATGGTAAC
. : . : . : . : . : . :
JMSF025P16+ GCTCTTCAACTATTGCATTCTTCAATTGCAACATAATTTCCGAAGTAGTATCCTTCGAAG
JMSF051F15+ GCTCTTCAACTATTGCATTCTTCAATTGCAACATAATTTCCGCAATAGTATCCTTCGAAG
JMSF039D15+ GCTCTTCAACTATTGCATTCTTCAATTGCAACATAATTTCCGCAATAGTATCCTTCGAAG
JMSF033O09+ GCTCTTCAACTATTGCATTCTTCAATTGCAACATAATTTCCGCAATAGTATCCTTCGAAG
JMSF031H15+ GCTCTTCAACTATTGCATTCTTCAATTGCAACATAATTTCCGCAATAGTATCCTTCGAAG
JMSF049E19+ GCTCTTCAACTATTGCATTCTTCAATTGCAACATAATTTCCGCAATAGTATCCTTCGAAG
JMSF035B23+ GCTCTTCAACTATTGCATTCTTCAATTGCAACATAATTTCCGCAATAGTATCCTTCGAAG
____________________________________________________________
consensus GCTCTTCAACTATTGCATTCTTCAATTGCAACATAATTTCCGCAATAGTATCCTTCGAAG
. : . : . : . : . : . :
JMSF025P16+ TTGCTTCTGCAATGGCTGTTTTCAACTTTGCAGCTTCCAGGAAGTCTTCATTTTCTACCG
JMSF051F15+ TTGCTTCTGCAATGGCTGTTTTCAACTTTGCAGCTTCCAGGAAGTCTTCATTTTCTACCG
JMSF039D15+ TTGCTTCTGCAATGGCTGTTTTCAACTTTGCAGCTTCCAGGAAGTCTTCATTTTCTACCG
JMSF033O09+ TTGCTTCTGCAATGGCTGTTTTCAACTTTGCAGCTTCCAGGAAGTCTTCATTTTCTACCG
JMSF031H15+ TTGCTTCTGCAATGGCTGTTTTCAACTTTGCAGCTTCCAGGAAGTCTTCATTTTCTACCG
JMSF049E19+ TTGCTTCTGCAATGGCTGTTTTCAACTTTGCAGCTTCCAGGAAGTCTTCATTTTCTACCG
JMSF035B23+ TTGCTTCTGCAATGGCTGTTTTCAACTTTGCAGCTTCCAGGAAGTCTTCATTTTCTACCG
____________________________________________________________
consensus TTGCTTCTGCAATGGCTGTTTTCAACTTTGCAGCTTCCAGGAAGTCTTCATTTTCTACCG
. : . : . : . : . : . :
JMSF025P16+ CATCTTCTAGTTGAAACTTAAGAACAGAAGCATAGCTCTCAGCTTGTTCCATCTCAGAGA
JMSF051F15+ CATCTTCTAGTTGAAACTTAAGAACAGAAGCATAGCTCTCAGCTTGTTCCATCTCAGAGA
JMSF039D15+ CATCTTCTAGTTGAAACTTAAGAACAGAAGCATAGCTCTCAGCTTGTTCCATCTCAGAGA
JMSF033O09+ CATCTTCTAGTTGAAACTTAAGAACAGAAGCATAGCTCTCAGCTTGTTCCATCTCAGAGA
JMSF031H15+ CATCTTCTAGTTGAAACTTAAGAACAGAAGCATAGCTCTCAGCTTGTTCCATCTCAGAGA
JMFF020H11+ GAAACTTAAGAACAGAAGCATAGCTCTCAGCTTGTTCCATCTCAGAGA
JMSF049E19+ CATCTTCTAGTTGAAACTTAAGAACAGAAGCATAGCTCTCAGCTTGTTCCATCTCAGAGA
JMSF035B23+ CATCTTCTAGTTGAAACTTAAGAACAGAAGCATAGCTCTCAGCTTGTTCCATCTCAGAGA
____________________________________________________________
consensus CATCTTCTAGTTGAAACTTAAGAACAGAAGCATAGCTCTCAGCTTGTTCCATCTCAGAGA
. : . : . : . : . : . :
JMSF025P16+ AATGCCGAGTCCATCGATTCCAGTCCCAATTGGAGGAATCAGAAGCACTAGTATTATCGG
JMSF051F15+ AATGCCGAGTCCATCGATTCCAGTCCCAATTGGAGGAATCAGAAGCACTAGTATTATCGG
JMSF039D15+ AATGCCGAGTCCATCGATTCCAGTACCAATTGGAGGAATCAGAAGCACTAGTATTATCGG
JMSF010K03+ GGAATCAGAAGCACTAGTATTATCGG
JMSF033O09+ AATGCCGAGTCCATCGATTCCAGTCCCAATTGGAGGAATCAGAAGCACTAGTATTATCGG
JMSF031H15+ AATGCCGAGTCCATCGATTCCAGTACCAATTGGAGGAATCAGAAGCACTAGTATTATCGG
JMFF020H11+ AATGCCGAGTCCATCGATTCCAGTCCCAATTGGAGGAATCAGAAGCACTAGTATTATCGG
JMSF049E19+ AATGCCGAGTCCATCGATTCCAGTCCCAATTGGAGGAATCAGAAGCACTAGTATTATCGG
JMSF035B23+ AATGCCGAGTCCATCGATTCCAGTCCCAATTGGAGGAATCAGAAGCACTAGTATTATCGG
____________________________________________________________
consensus AATGCCGAGTCCATCGATTCCAGTCCCAATTGGAGGAATCAGAAGCACTAGTATTATCGG
. : . : . : . : . : . :
JMSF025P16+ AAGAGCAGCTAGTGTTGCTGCCGGGGGCAATAGCAGAAGGAGAGGCCGGACCGTCGTCTT
JMSF051F15+ AAGAGCAGCTAGTGTTGCTGCCGGGGACAATAGCAGAAGGAGAGGCCGGACCGTCGTCTT
JMSF039D15+ AAGAGCAGCTAGTGTTGCTGCCGGGGACAATAGCAGAAGGAGAGGCCGGACCGTCGTCTT
JMSF010K03+ AAGAGCAGCTAGTGTTGCTGCCGGGGACAATAGCAGAAGGAGAGGCCGGACCGTCGTCTT
JMSF033O09+ AAGAGCAGCTAGTGTTGCTGCCGGGGACAATAGCAGAAGGAGAGGCCGGACCGTCGTCTT
JMSF031H15+ AAGAGCAGCTAGTGTTGCTGCCGGGGACAATAGCAGAAGGAGAGGCCGGACCGTCGTCTT
JMFF020H11+ AAGAGCAGCTAGTGTTGCTGCCGGGGACAATAGCAGAAGGAGAGGCCGGACCGTCGTCTT
JMSF049E19+ AAGAGCAGCTAGTGTTGCTGCCGGGGACAATAGCAGAAGGAGAGGCCGGACCGTCGTCTT
JMSF035B23+ AAGAGCAGCTAGTGTTGCTGCCGGGGACAATAGCAGAAGGAGAGGCCGGACCGTCGTCTT
____________________________________________________________
consensus AAGAGCAGCTAGTGTTGCTGCCGGGGACAATAGCAGAAGGAGAGGCCGGACCGTCGTCTT
. : . : . : . : . : . :
JMSF025P16+ TGCTACATCGACAGCGGAGCTTCGAGTAAAGGCGGTCTCTGAGGAACAACAATTTATTGT
JMSF051F15+ TGCTACATCGACAGCGGAGCTTCGAGTAAAGGCGGTCTCTGAGGAACAACAATTTATTGT
JMSF039D15+ TGCTACATCGACAGCGGAGCTTCGAGTAAAGGCGGTCTCTGAGGAACAACAATTTATTGT
JMSF010K03+ TGCTACATCGACAGCGGAGCTTCGAGTAAAGGCGGTCTCTGAGGAACAACAATTTATTGT
JMSF033O09+ TGCTACATCGACAGCGGAGCTTCGAGTAAAGGCGGTCTCTGAGGAACAACAATTTATTGT
JMSF031H15+ TGCTACATCGACAGCGGAGCTTCGAGTAAAGGCGGTCTCTGAGGAACAACAATTTATTGT
JMFF020H11+ TGCTACATCGACAGCGGAGCTTCGAGTAAAGGCGGTCTCTGAGGAACAACAATTTATTGT
JMSF049E19+ TGCTACATCGACAGCGGAGCTTCGAGTAAAGGCGGTCTCTGAGGAACAACAATTTATTGT
JMSF035B23+ TGCTACATCGACAGCGGAGCTTCGAGTAAAGGCGGTCTCTGAGGAACAACAATTTATTGT
____________________________________________________________
consensus TGCTACATCGACAGCGGAGCTTCGAGTAAAGGCGGTCTCTGAGGAACAACAATTTATTGT
. : . : . : . : . : . :
JMSF025P16+ TTCCATTGGGAAAAAGAAGAATCGGATTTCGCCGCGGAAAAACACGATGATCGTGTGAAG
JMSF051F15+ TTCCATTGGGAAAAAGAAGAATCGGATTTCGCCGCGGAAAAACACGATGATCGTGTGAAG
JMSF039D15+ TTCCATTGGGAAAAAGAAGAATCGGATTTCGCCGCGGAAAAACACGATGATCGTGTGAAG
JMSF010K03+ TTCCATTGGGAAAAAGAAGAATCGGATTTCGCCGCGGAAAAACACGATGATCGTGTGAAG
JMSF033O09+ TTCCATTGGGAAAAAGAAGAATCGGATTTCGCCGCGGAAAAACACGATGATCGTGTGAAG
JMSF031H15+ TTCCATTGGGAAAAAGAAGAATCGGATTTCGCCGCGGAAAAACACGATGATCGTGTGAAG
JMFF020H11+ TTCCATTGGGAAAAAGAAGAATCGGATTTCGCCGCGGAAAAACACGATGATCGTGTGAAG
JMSF049E19+ TTCCATTGGGAAAAAGAAGAATCGGATTTCGCCGCGGAAAAACACGATGATCGTGTGAAG
JMSF035B23+ TTCCATTGGGAAAAAGAAGAATCGGATTTCGCCGCGGAAAAACACGATGATCGTGTGAAG
____________________________________________________________
consensus TTCCATTGGGAAAAAGAAGAATCGGATTTCGCCGCGGAAAAACACGATGATCGTGTGAAG
. : . : . : . : . : . :
JMSF025P16+ ATGAAGATGAGGGAAAGGATGATGATGACGAAGAAGACGAAGACAAGGAAGGCCTGGGTT
JMSF051F15+ ATGAAGATGAGGGAAAGGATGATGATGACGAAGAAGACGAAGACAAGGAAGGCCTGGGTT
JMSF039D15+ ATGAAGATGAGGGAAAGGATGATGATGACGAAGAAGACGAAGACAAGGAAGGCCTGGGTT
JMSF010K03+ ATGAAGATGAGGGAAAGGATGATGATGACGAAGAAGACGAAGACAAGGAAGGCCTGGGTT
JMSF033O09+ ATGAAGATGAGGGAAAGGATGATGATGACGAAGAAGACGAAGACAAGGAAGGCCTGGGTT
JMSF031H15+ ATGAAGATGAGGGAAAGGATGATGATGACGAAGAAGACGAAGACAAGGAAGGCCTGGGTT
JMFF020H11+ ATGAAGATGAGGGAAAGGATGATGATGACGAAGAAGACGAAGACAAGGAAGGCCTGGGTT
JMSF049E19+ ATGAAGATGAGGGAAAGGATGATGATGACGAAGAAGACGAAGACAAGGAAGGCCTGGGTT
JMSF035B23+ ATGAAGATGAGGGAAAGGATGATGATGACGAAGAAGACGAAGACAAGGAAGGCCTGGGTT
____________________________________________________________
consensus ATGAAGATGAGGGAAAGGATGATGATGACGAAGAAGACGAAGACAAGGAAGGCCTGGGTT
. : . : . : . : . : . :
JMSF025P16+ GACTGTGTGGTGCGTGCCAGGCGTTGGCAACCGCCATATTATCTTCTGTTCTCTCCTCTT
JMSF051F15+ GACTGTGTGGTGCGTGCCAGGCGTTGGCAACCGCCATATTATCTTCTGTTCTCTCCTCTT
JMSF039D15+ GACTGTGTGGTGCGTGCCAGGCGTTGGCAACCGCCATATTATCTTCTGTTCTCTCCTCTT
JMSF010K03+ GACTGTGTGGTGCGTGCCAGGCGTTGGCAACCGCCATATTATCTTCTGTTCTCTCCTCTT
JMSF033O09+ GACTGTGTGGTGCGTGCCAGGCGTTGGCAACCGCCATATTATCTTCTGTTCTCTCCTCTT
JMSF031H15+ GACTGTGTGGTGCGTGCCAGGCGTTGGCAACCGCCATATTATCTTCTGTTCTCTCCTCTT
JMFF020H11+ GACTGTGTGGTGCGTGCCAGGCGTTGGCAACCGCCATATTATCTTCTGTTCTCTCCTCTT
JMSF049E19+ GACTGTGTGGTGCGTGCCAGGCGTTGGCAACCGCCATATTATCTTCTGTTCTCTCCTCTT
JMSF035B23+ GACTGTGTGGTGCGTGCCAGGCGTTGGCAACCGCCATATTATCTTCTGTTCTCTCCTCTT
____________________________________________________________
consensus GACTGTGTGGTGCGTGCCAGGCGTTGGCAACCGCCATATTATCTTCTGTTCTCTCCTCTT
. : . : . : . : . : . :
JMSF025P16+ TTCCTTCGCTTTTCTC
JMSF051F15+ TTCCTTCGCTTTTCTCTC
JMSF039D15+ TTCCTTCGCTTTTCTCTCTCTGCTTCTCACTGTGAGAATTCGGCTTTTCGTCTC
JMSF010K03+ TTCCTTCGCTTTTCTCTCTCTGCTTCTCACTGT
JMSF033O09+ TTCCTTCGCTTTTCTCTCTCTGCTTCTCACTGTGAGAATTCGGCTTTTC
JMSF031H15+ TTCCTTCGCTTTTCTCTCTCTGCTTCTCACTGTGAGAATTCGGCTTTTCGTCTCCTTC
JMFF020H11+ TTCCTTCGCTTTTCTCTCTCTGCTTCTCACTGTGAGAATTCGGCTTTTCGTCTCCTTC
JMSF049E19+ TTCCTTCGCTTTTCTCTCTCTGCTTCTCACTGTGAGAATTCGGCTTTTCGTCTCCTTC
JMSF035B23+ TTCCTTCGCTTTTCTCTCTCTGCTTCTCACTGTGAGAATTCGGCTTTTCGTCTCCTTCTC
____________________________________________________________
consensus TTCCTTCGCTTTTCTCTCTCTGCTTCTCACTGTGAGAATTCGGCTTTTCGTCTCCTTCTC