| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF009M24 | Sequence | 344 | 012089 (7) | emb|CDO99091.1| | 2e-45 | unnamed protein product [Coffea canephora] | 754 | 012089 (7) | ref|XP_011032656.1| | 9e-112 | PREDICTED: homocysteine S-methyltransferase 2-like [Populus euphratica] |
| JMSF014I20 | Sequence | 439 | 012089 (7) | emb|CDO99091.1| | 4e-49 | unnamed protein product [Coffea canephora] | 750 | 012089 (7) | emb|CDO99091.1| | 3e-106 | unnamed protein product [Coffea canephora] |
| JMSF035A23 | Sequence | 704 | 012089 (7) | ref|XP_009804559.1| | 1e-78 | PREDICTED: homocysteine S-methyltransferase 2-like [Nicotiana sylvestris] | |||||
| JMSF048G11 | Sequence | 664 | 012089 (7) | ref|XP_009804559.1| | 5e-90 | PREDICTED: homocysteine S-methyltransferase 2-like [Nicotiana sylvestris] | 773 | 012089 (7) | ref|XP_011032656.1| | 1e-111 | PREDICTED: homocysteine S-methyltransferase 2-like [Populus euphratica] |
This contig is upended
. : . : . : . : . : . :
rJMSF014I20- GTACATTATTATTATTATTATTAACATGAAGATATTCAGTGGCACAT
rJMSF048G11- AGATATTCAGTGGCACAT
____________________________________________________________
consensus GTACATTATTATTATTATTATTAACATGAAGATATTCAGTGGCACAT
. : . : . : . : . : . :
rJMSF014I20- GCCAAATAGATAGATAAGGATACAACACCATTGATTCAACAAGCTAGCTAGTAGCTAGTA
rJMSF009M24- GATTCAACAAGCTAGCTAGTAGCTAGTA
rJMSF048G11- GCCAAATAGATAGATAAGGATACAACACCATTGATTCAACAAGCTAGCTAGTAGCTAGTA
____________________________________________________________
consensus GCCAAATAGATAGATAAGGATACAACACCATTGATTCAACAAGCTAGCTAGTAGCTAGTA
. : . : . : . : . : . :
rJMSF014I20- GCTAGTATAGGTGCTTCAATTCGGTCTAAGCGTGAGAAGACTTGGTGGAGAGAAGCTTGG
rJMSF009M24- GCTAGTATAGGTGCTTCAATTCGGTCTAAGCGTGAGAAGACTTGGTGGAGAGAAGCTTGG
rJMSF048G11- GCTAGTATAGGTGCTTCAATTCGGTCTAAGCGTGAGAAGACTTGGTGGAGAGAAGCTTGG
____________________________________________________________
consensus GCTAGTATAGGTGCTTCAATTCGGTCTAAGCGTGAGAAGACTTGGTGGAGAGAAGCTTGG
. : . : . : . : . : . :
rJMSF014I20- AAATTGCTCTGATGGTGTTAGGAGTTGTCCTACAGCAGCCTCCCACCAGTGAAGCTCCAA
rJMSF009M24- AAATTGCTCTGATGGTGTTAGGAGTTGTCCTACAGCAGCCTCCCACCAGTGAAGCTCCAA
rJMSF048G11- AAATTGCTCTGATGGTGTTAGGAGTTGTCCTACAGCAGCCTCCCACCAGTGAAGCTCCAA
____________________________________________________________
consensus AAATTGCTCTGATGGTGTTAGGAGTTGTCCTACAGCAGCCTCCCACCAGTGAAGCTCCAA
. : . : . : . : . : . :
rJMSF014I20- CCTCGCACCATTTCCCAACATACGACACGAAGTCTCCATCTGCAACGCCCGTGGACGCCA
rJMSF009M24- CCTCGCACCATTTCCCAACATACGACACGAAGTCTCCATCTGCAACGCCCGTGGACGCCA
rJMSF048G11- CCTCGCACCATTTCCCAACATACGACACGAAGTCTCCATCTGCAACGCCCGTGGACGCCA
____________________________________________________________
consensus CCTCGCACCATTTCCCAACATACGACACGAAGTCTCCATCTGCAACGCCCGTGGACGCCA
. : . : . : . : . : . :
rJMSF014I20- CCCACAACTTTCTCTCACCATCGTAAGTCTCACCGCTGTTGGGATACACAAGTATGGGCT
rJMSF009M24- CCCACAACTTTCTCTCACCATCGTAAGTCTCACCGCTGTTGGGATACACAAGTATGGGCT
rJMSF048G11- CCCACAACTTTCTCTCACCATCGTAAGTCTCACCGCTGTTGGGATACACAAGTATGGGCT
____________________________________________________________
consensus CCCACAACTTTCTCTCACCATCGTAAGTCTCACCGCTGTTGGGATACACAAGTATGGGCT
. : . : . : . : . : . :
rJMSF014I20- TGTTCGTGACCTTTTGTATTGCTTGTACCAGTCCATGAATATATCTGGGAGGAGTGCAAT
rJMSF009M24- TGTTCGTGACCTTTTGTATTGCTTGTACCAGTCCATGAATATATCTGGGAGGAGTGCAAT
rJMSF048G11- TGTTCGTGACCTTTTGTATTGCTTGTACCAGTCCATGAATATATCTGGGAGGAGTGCAAT
____________________________________________________________
consensus TGTTCGTGACCTTTTGTATTGCTTGTACCAGTCCATGAATATATCTGGGAGGAGTGCAAT
. : . : . : . : . : . :
rJMSF014I20- TGATTCCAACGCTGACAACTTGCGCACATGAATCAGCAATTGAAGCGCAATCTTCTATTG
rJMSF009M24- TGATTCCAACGCTGACAACTTGCGCACATGAATCAGCAATTGAAGCGCAATCTTCTATTG
rJMSF048G11- TGATTCCAACGCTGACAACTTGCGCACATGAATCAGCAATTGAAGCGCAATCTTCTATTG
____________________________________________________________
consensus TGATTCCAACGCTGACAACTTGCGCACATGAATCAGCAATTGAAGCGCAATCTTCTATTG
. : . : . : . : . : . :
rJMSF014I20- AATCTCCACTCACTACGTTAATCCCATCCTTAGAATTGAAGGAAAACCAAGCTGGAACTT
rJMSF009M24- AATCTCCACTCACTACGTTAATCCCATCCTTAGAATTGAAGGAAAACCAAGCTGGAACTT
rJMSF048G11- AATCTCCACTCACTACGTTAATCCCATCCTTAGAATTGAAGGAAAACCAAGCTGGAACTT
____________________________________________________________
consensus AATCTCCACTCACTACGTTAATCCCATCCTTAGAATTGAAGGAAAACCAAGCTGGAACTT
. : . : . : . : . : . :
rJMSF014I20- TGATCTTTTCTTCCTCAAGAAGTTGGGCATAGGCCTGGGCTTCCAATTTGTTTGGGATTG
rJMSF009M24- TGATCTTTTCTTCCTCAAGAAGTTGGGCATAGGCCTGGGCTTCCAATTTGTTTGGGATTG
rJMSF048G11- TGATCTTTTCTTCCTCAAGAAGTTGGGCATAGGCCTGGGCTTCCAATTTGTTTGGGATTG
____________________________________________________________
consensus TGATCTTTTCTTCCTCAAGAAGTTGGGCATAGGCCTGGGCTTCCAATTTGTTTGGGATTG
. : . : . : . : . : . :
rJMSF014I20- TCTCAAATGCTATGAGATCAGCTCCAGAATCCGCTAGAACTTGAACTCTTCTCCGGTGAA
rJMSF009M24- TCTCAAATGCTATGAGATCAGCTCCAGAATCCGCTAGAACTTGAACTCTTCTCCGGTGAA
rJMSF048G11- TCTCAAATGCTATGAGATCAGCTCCAGAATCCGCTAGAACTTGAACTCTTCTCCGGTGAA
JMSF048G11+ CCGGTGAA
____________________________________________________________
consensus TCTCAAATGCTATGAGATCAGCTCCAGAATCCGCTAGAACTTGAACTCTTCTCCGGTGAA
. : . : . : . : . : . :
rJMSF014I20- AATTCTTCAAGGTCTCAATGGTGACGGTATCCCCGTACATCCCACTGTATTCAGAACCAT
rJMSF009M24- AATTCTTCAAGGTCTCAATGGTGACGGTATCCCCGTACATCCCACTGTATTCAGAACCAT
rJMSF048G11- AATTCTTCAAGGTCTCAATGGTGACGGTATCCCCGTACATCCCACTGTATTCAGAACCAT
JMSF048G11+ AATTCTTCAAGGTCTCAATGGTGACGGTATCCCCGTACATCCCACTGTATTCAGAACCAT
JMSF035A23+ CTGTATTCAGAACCAT
____________________________________________________________
consensus AATTCTTCAAGGTCTCAATGGTGACGGTATCCCCGTACATCCCACTGTATTCAGAACCAT
. : . : . : . : . : . :
rJMSF014I20- CAGCCAAATAAGCTCCATAACTCCCAACAGAGGCAGCACCTAA
rJMSF009M24- CAGCCAAATAAGCTCCATAACTCCCAACAGAGGCAGCAACTAAGATGGGTCGTTGCTTTA
rJMSF048G11- CAGCCAAATAAGCTCCATAACTCCCAACAGAGGCAGCAACTAAGATTGGTCGTTGCTTTA
JMSF048G11+ CAGCCAAATAAGCTCCATAACTCCCAACAGAGGCAGCAACTAAGATTGGTCGTTGCTTTA
JMSF035A23+ CAGCCAAATAAGCTCCATAACTCCCAACAGAGGCAGCAACTAAGATTGGTCGTTGCTTTA
____________________________________________________________
consensus CAGCCAAATAAGCTCCATAACTCCCAACAGAGGCAGCAACTAAGATTGGTCGTTGCTTTA
. : . : . : . : . : . :
rJMSF009M24- TGCTTGTTTCATCTCCATTAATAATGTCAAA
rJMSF048G11- TGCTTGTTTCATCTCCATTAATAATGTCAAA
JMSF048G11+ TGCTTGTTTCATCTCCATTAATAATGTCAAAACCACCTTTGGTGGCTCTGTCATTATATA
JMSF035A23+ TGCTTGTTTCATCTCCATTAATAATGTCAAAACCACCTTTGGTGGCTCTGTCATTATATA
____________________________________________________________
consensus TGCTTGTTTCATCTCCATTAATAATGTCAAAACCACCTTTGGTGGCTCTGTCATTATATA
. : . : . : . : . : . :
JMSF009M24+ TCTTCCC
JMSF048G11+ TGTCCCGTGCCTCACATGCGATTTGCACGCTTCGTTTCAATAGGGATTCTCCTTCTTCCC
JMSF035A23+ TGTCCCGTGCCTCACATGCGATTTGCACGCTTCGTTTCAATAGGGATTCTCCTTCTTCCC
____________________________________________________________
consensus TGTCCCGTGCCTCACATGCGATTTGCACGCTTCGTTTCAATAGGGATTCTCCTTCTTCCC
. : . : . : . : . : . :
JMSF014I20+ CCTGATAAGATGCAGATATTATGA
JMSF009M24+ TCGGTATGCCCTTGGCTTCAAATCCCTGGAGGGTAGCCTGATAAGATGCAGATATTATGA
JMSF048G11+ TCGGTATGCCCTTGGCTTCAAATCCCTGGAGGGTAGCCTGATAAGATGCAGATATTATGA
JMSF035A23+ TCGGTATGCCCTTGGCTTCAAATCCCTGGAGGGTAGCCTGATAAGATGCAGATATTATGA
____________________________________________________________
consensus TCGGTATGCCCTTGGCTTCAAATCCCTGGAGGGTAGCCTGATAAGATGCAGATATTATGA
. : . : . : . : . : . :
JMSF014I20+ TGTTTCCCCCAGCTTCAAGGTAATCTAAGTGCACCCTTCGAATGAGGTGAGGAGAGCTGA
JMSF009M24+ TGTTTCCCCCAGCTTCAAGGTAATCTAAGTGCACCCTTCGAATGAGGTGAGGAGAGCTGA
JMSF048G11+ TGTTTCCCCCAGCTTCAAGGTAATCTAAGTGCACCCTTCGAATGAGGTGAGGAGAGCTGA
JMSF035A23+ TGTTTCCCCCAGCTTCAAGGTAATCTAAGTGCACCCTTCGAATGAGGTGAGGAGAGCTGA
____________________________________________________________
consensus TGTTTCCCCCAGCTTCAAGGTAATCTAAGTGCACCCTTCGAATGAGGTGAGGAGAGCTGA
. : . : . : . : . : . :
JMSF014I20+ GGAGGCATTTGGCACTCCAAAGAGGGTCATCGAGGTCGGCGCCATGCCGCTCGAGCTCCG
JMSF009M24+ GGAGGCATTTGGCACTCCAAAGAGGGTCATCGAGGTCGGCGCCATGCCGCTCGAGCTCCG
JMSF048G11+ GGAGGCATTTGGCACTCCAAAGAGGGTCATCGAGGTCGGCGCCATGCCGCTCGAGCTCCG
JMSF035A23+ GGAGGCATTTGGCACTCCAAAGAGGGTCATCGAGGTCGGCGCCATGCCGCTCGAGCTCCG
____________________________________________________________
consensus GGAGGCATTTGGCACTCCAAAGAGGGTCATCGAGGTCGGCGCCATGCCGCTCGAGCTCCG
. : . : . : . : . : . :
JMSF014I20+ TCGCCAGGCCGCCGTCTATGACGGCGTAGCCACCGCACCGGCGGAGGAGATCCGTCATGA
JMSF009M24+ TCGCCAGGCCGCCGTCTATGACGGCGTAGCCACCGCACCGGCGGAGGAGATCCGTCATGA
JMSF048G11+ TCGCCAGGCCGCCGTCTATGACGGCGTAGCCACCGCACCGGCGGAGGAGATCCGTCATGA
JMSF035A23+ TCGCCAGGCCGCCGTCTATGACGGCGTAGCCACCGCACCGGCGGAGGAGATCCGTCATGA
____________________________________________________________
consensus TCGCCAGGCCGCCGTCTATGACGGCGTAGCCACCGCACCGGCGGAGGAGATCCGTCATGA
. : . : . : . : . : . :
JMSF014I20+ TCGAAGATGATGACGACTGTTCAAAGCTTTTCAGGCCCATGATATGATGATGGATTATTG
JMSF009M24+ TCGAAGATGATGACGACTGTTCAAAGCTTTTCAGGCCCATGATATGATGATGGATTATTG
JMSF048G11+ TCGAAGATGATGACGACTGTTCAAAGCTTTTCAGGCCCATGATATGATGATGGATTATTG
JMSF035A23+ TCGAAGATGATGACGACTGTTCAAAGCTTTTCAGGCCCATGATATGATGATGGATTATTG
____________________________________________________________
consensus TCGAAGATGATGACGACTGTTCAAAGCTTTTCAGGCCCATGATATGATGATGGATTATTG
. : . : . : . : . : . :
JMSF014I20+ TAGCCTAAAATTTGCAGGTGTTAAGGGAAAGAGGTTGGCGAGTTAAGAAGGGAAGTAGAT
JMSF009M24+ TAGCCTAAAATTTGCAGGTGTTAAGGGAAAGAGGT
JMSF048G11+ TAGCCTAAAATTTGCAGGTGTTAAGGGAAAGAGGTTGGCGAGTTAAGAAGGGAAGTAGAT
JMSF035A23+ TAGCCTAAAATTTGCAGGTGTTAAGGGAAAGAGGTTGGCGAGTTAAGAAGGGAAGTAGAT
____________________________________________________________
consensus TAGCCTAAAATTTGCAGGTGTTAAGGGAAAGAGGTTGGCGAGTTAAGAAGGGAAGTAGAT
. : . : . : . : . : . :
JMSF014I20+ TGAAGTAATATGAACTTCAAGTCTAGTAGTTGTCTAGGTGCAATGACTACAC
JMSF048G11+ TGAAGTAATATGAACTTCAAGTCTAGTAGTTGTCTAGGTGCAATGACTACAC
JMSF035A23+ TGAAGTAATATGAACTTCAAGTCTAGTAGTTGTCTAGGTGCAATGACTACACGTCTCCCA
____________________________________________________________
consensus TGAAGTAATATGAACTTCAAGTCTAGTAGTTGTCTAGGTGCAATGACTACACGTCTCCCA