| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008A10 | Sequence | 516 | 012079 (6) | ref|XP_004238172.1| | 7e-64 | PREDICTED: uncharacterized protein At1g47420, mitochondrial [Solanum lycopersic | 748 | 012079 (6) | emb|CDP01341.1| | 1e-84 | unnamed protein product [Coffea canephora] |
| JMFF051L23 | Sequence | 615 | 012079 (6) | ref|XP_004238172.1| | 1e-54 | PREDICTED: uncharacterized protein At1g47420, mitochondrial [Solanum lycopersic | 569 | 012079 (6) | emb|CDP01341.1| | 9e-47 | unnamed protein product [Coffea canephora] |
| JMSF033C07 | Sequence | 671 | 012079 (6) | ref|XP_004238172.1| | 2e-83 | PREDICTED: uncharacterized protein At1g47420, mitochondrial [Solanum lycopersic | 734 | 012079 (6) | emb|CDP01341.1| | 3e-91 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF051L23- CTTTAACAAGCAAAACAAAGCCTTACAT
____________________________________________________________
consensus CTTTAACAAGCAAAACAAAGCCTTACAT
. : . : . : . : . : . :
rJMFF051L23- TAACAGAACATTTGCTACATCCAAGTGTCAGGCAACACAAAATTTGGGCAAGAATTATTT
rJMFF008A10- AACACTTGCTACATCCAAGTGTCAGGCAACACAAAATTTGGGCAAGAATTATTT
rJMSF033C07- AGTGTCAGGCAACACAAAATTTGGGCAAGAATTATTT
____________________________________________________________
consensus TAACAGAACATTTGCTACATCCAAGTGTCAGGCAACACAAAATTTGGGCAAGAATTATTT
. : . : . : . : . : . :
rJMFF051L23- AAAATCCAAAAGATGACAAATGTTTTATCCAGATGGGAAATTATCGCCATTATTATTATT
rJMFF008A10- AAAATCCAAAAGATGACAAATGTTTTATCCAGATGGGAAATTATCGCCATTATTATTATT
rJMSF033C07- AAAATCCAAAAGATGACAAATGTTTTATCCAGATGGGAAATTATCGCCATTATTATTATT
____________________________________________________________
consensus AAAATCCAAAAGATGACAAATGTTTTATCCAGATGGGAAATTATCGCCATTATTATTATT
. : . : . : . : . : . :
rJMFF051L23- ATCTGCAAGCTGTTCTAATGTCCGATTTCTTCAAATTTGCAAGAAGCTGATTGCAACAGA
rJMFF008A10- ATCTGCAAGCTGTTCTAATGTCCGATTTCTTCAAATTTGCAAGAAGCTGATTGCAACAGA
rJMSF033C07- ATCTGCAAGCTGTTCTAATGTCCGATTTCTTCAAATTTGCAAGAAGCTGATTGCAACAGA
____________________________________________________________
consensus ATCTGCAAGCTGTTCTAATGTCCGATTTCTTCAAATTTGCAAGAAGCTGATTGCAACAGA
. : . : . : . : . : . :
rJMFF051L23- ACAAATTACAGCAACCAGTTGGCTCGAGAACTGAATGGACTTCAAAACATGGTCTTGGTC
rJMFF008A10- ACAAATTACAGCAACCAGTTGGCTCGAGAACTGAATGGACTTCAAAACATGGTCTTGGTC
rJMSF033C07- ACAAATTACAGCAACCAGTTGGCTCGAGAACTGAATGGACTTCAAAACATGGTCTTGGTC
____________________________________________________________
consensus ACAAATTACAGCAACCAGTTGGCTCGAGAACTGAATGGACTTCAAAACATGGTCTTGGTC
. : . : . : . : . : . :
rJMFF051L23- ATCTTTCAAGATTTACGCTCTTTGCTCAACATAAGAACCAGCAAGTCCAGATGTTCCAAG
rJMFF008A10- ATCTTTCAAGATTTACGCTCTTTGCTCAACATAAGAACCAGCAAGTCCAGATGTTCCAAG
rJMSF033C07- ATCTTTCAAGATTTACGCTCTTTGCTCAACATAAGAACCAGCAAGTCCAGATGTTCCAAG
____________________________________________________________
consensus ATCTTTCAAGATTTACGCTCTTTGCTCAACATAAGAACCAGCAAGTCCAGATGTTCCAAG
. : . : . : . : . : . :
rJMFF051L23- AACCGAAACCTTTCCCCAGTCAGAATGTAGGCCACTGCACCTCATCTTCAAGAATATCAT
rJMFF008A10- AACCGAAACCTTTCCCCAGTCAGAATGTAGGCCACTGCACCTCATCTTCAAGAATATCAT
rJMSF033C07- AACCGAAACCTTTCCCCAGTCAGAATGTAGGCCACTGCACCTCATCTTCAAGAATATCAT
____________________________________________________________
consensus AACCGAAACCTTTCCCCAGTCAGAATGTAGGCCACTGCACCTCATCTTCAAGAATATCAT
. : . : . : . : . : . :
rJMFF051L23- CCTACCTCCTAGTTCGGTCTCAACTTTCTTCTTCAAATATCCCTCCTCGGGCCCAAAGGA
rJMFF008A10- CCTACCTCCTAGTTCGGTCTCAACTTTCTTCTTCAAATATCCCTCCTCGGGCCCAAAGGA
rJMSF033C07- CCTACCTCCTAGTTCGGTCTCAACTTTCTTCTTCAAATATCCCTCCTCGGGCCCAAAGGA
JMSF033C07+ GGGCCCAAAGGA
____________________________________________________________
consensus CCTACCTCCTAGTTCGGTCTCAACTTTCTTCTTCAAATATCCCTCCTCGGGCCCAAAGGA
. : . : . : . : . : . :
rJMFF051L23- ATTCAAATATGTATTATAGCGTTGGAAGATTGTATCCAGTGCATTAGCCATATGTTTTGG
rJMFF008A10- ATTCAAATATGTATTATAGCGTTGGAAGATTGTATCCAGTGCATTAGCCATATGTTTTGG
rJMSF033C07- ATTCAAATATGTATTATAGCGTTGGAAGATTGTATCCAGTGCATTAGCCATATGTTTTGG
JMFF051L23+ TTTGG
JMSF033C07+ ATTCAAATATGTATTATAGCGTTGGAAGATTGTATCCAGTGCATTAGCCATATGTTTTGG
____________________________________________________________
consensus ATTCAAATATGTATTATAGCGTTGGAAGATTGTATCCAGTGCATTAGCCATATGTTTTGG
. : . : . : . : . : . :
rJMFF051L23- CATAGGCTTCACATTCTCGCCACTTAACCCAATAGAATCGTCAATTACCATTTTCAAGTT
rJMFF008A10- CATAGGCTTCACATTCTCGCCACTTAACCCAATAGAATCGTCAATTGCCATTTTCAAGTT
rJMSF033C07- CATAGGCTTCACATTCTCGCCACTTAACCCAATAGAATCGTCAATTGCCATTTTCAAGTT
JMFF051L23+ CATAGGCTTCACATTCTCGCCACTTAACCCAATAGAATCGTCAATTACCATTTTCAAG-T
JMFF008A10+ CAATAGAATCGTCAATTGCCATTTTCAAGTT
JMSF033C07+ CATAGGCTTCACATTCTCGCCACTTAACCCAATAGAATCGTCAATTGCCATTTTCAAGTT
____________________________________________________________
consensus CATAGGCTTCACATTCTCGCCACTTAACCCAATAGAATCGTCAATTGCCATTTTCAAGTT
. : . : . : . : . : . :
rJMFF051L23- T
rJMFF008A10- TGTGAGAATCCCAATGAATTCCTCAATGGCTTCTGCTGCGCGGAAAACATTAGCCAAGGC
rJMSF033C07- TGTGAGAATCCCAATGAATTCCTCAATGGCTTCTGCTGCGCGGAAAACATTAGCCAAGGC
JMFF051L23+ TGTGAGAATCCCAATGAATTCCTCAATGGCTTCTGCTGCGCGGAAAACATTAGCCAAGGC
JMFF008A10+ TGTGAGAATCCCAATGAATTCCTCAATGGCTTCTGCTGCGCGGAAAACATTAGCCAAGGC
JMSF033C07+ TGTGAGAATCCCAATGAATTCCTCAATGGCTTCTGCTGCGCGGAAAACATTAGCCAAGGC
____________________________________________________________
consensus TGTGAGAATCCCAATGAATTCCTCAATGGCTTCTGCTGCGCGGAAAACATTAGCCAAGGC
. : . : . : . : . : . :
rJMFF008A10- CTCCTGGCCAGCCTTGTCATCAGTACTTTTGGATAATGCCTTCTTCGTTTCATCGATAAC
rJMSF033C07- CTCCTGGCCAGCCTTGTCATCAGTACTTTTGGATAATGCCTTCTTCGTTTCATCGATAAC
JMFF051L23+ CTCCTGGCCAGCCTTGTCATCAGTACTTTTGGATAATGCCTTCTTCGTTTCATCGATAAC
JMFF008A10+ CTCCTGGCCAGCCTTGTCATCAGTACTTTTGGATAATGCCTTCTTCGTTTCATCGATAAC
JMSF033C07+ CTCCTGGCCAGCCTTGTCATCAGTACTTTTGGATAATGCCTTCTTCGTTTCATCGATAAC
____________________________________________________________
consensus CTCCTGGCCAGCCTTGTCATCAGTACTTTTGGATAATGCCTTCTTCGTTTCATCGATAAC
. : . : . : . : . : . :
rJMFF008A10- AGCTTCTGGAATCTCATCCCAGCTTGCAGCCATTAAGTCTTTAAATGCACACCTGATTTC
rJMSF033C07- AGCTTCTGGAATCTCATCCCAGCTTGCAGCCATTAAGTCTTTAAATGCACACCTGATTT-
JMFF051L23+ AGCTTCTGGAATCTCATCCCAGCTTGCAGCCATTAAGTCTTTAAATGCACACCTGATTT-
JMFF008A10+ AGCTTCTGGAATCTCATCCCAGCTTGCAGCCATTAAGTCTTTAAATGCACACCTGATTT-
JMSF033C07+ AGCTTCTGGAATCTCATCCCAGCTTGCAGCCATTAAGTCTTTAAATGCACACCTGATTT-
____________________________________________________________
consensus AGCTTCTGGAATCTCATCCCAGCTTGCAGCCATTAAGTCTTTAAATGCACACCTGATTT-
. : . : . : . : . : . :
rJMFF008A10- CTTCATCTTGCACATTGGGCATGTGGGCCACATC
rJMSF033C07- CTTCATCTTGCACATTGGGCATGTGGGCCACATCCTC
JMFF051L23+ CTTCATCTTGCACATTGGGCATGTGGGCCACATCCTCGCTGAAAGAACGTACACTTCCCA
JMFF008A10+ CTTCATCTTGCACATTGGGCATGTGGGCCACATCCTCGCTGAAAGAACGTACACTTCCCA
JMSF033C07+ CTTCATCTTGCACATTGGGCATGTGGGCCACATCCTCGCTGAAAGAACGTACACTTCCCA
____________________________________________________________
consensus CTTCATCTTGCACATTGGGCATGTGGGCCACATCCTCGCTGAAAGAACGTACACTTCCCA
. : . : . : . : . : . :
JMFF051L23+ ATCCCAATGAAAATGGATGAAGGCATTCTGGATTAACAGATTTTGGAGAATCCACAAAAG
JMFF008A10+ ATCCCAATGAAAATGGATGAAGGCATTCTGGATTAACAGATTTTGGAGAATCCACAAAAG
JMSF033C07+ ATCCCAATGAAAATGGATGAAGGCATTCTGGATTAACAGATTTTGGAGAATCCACAAAAG
____________________________________________________________
consensus ATCCCAATGAAAATGGATGAAGGCATTCTGGATTAACAGATTTTGGAGAATCCACAAAAG
. : . : . : . : . : . :
JMFF051L23+ AAGGGGGGGAGATATGAAGGTGGCGGAAAGCTTGGTGGTTGGCTGTGGCCGTGGCGGCGA
JMFF008A10+ AAGGGGGGGAGATATGAAGGTGGCGGAAAGCTTGGTGGTTGGCTGTGGCCGTGGCGGCGA
JMSF033C07+ AAGGGGGGGAGATATGAAGGTGGCGGAAAGCTTGGTGGTTGGCTGTGGCCGTGGCGGCGA
____________________________________________________________
consensus AAGGGGGGGAGATATGAAGGTGGCGGAAAGCTTGGTGGTTGGCTGTGGCCGTGGCGGCGA
. : . : . : . : . : . :
JMFF051L23+ GGGCGGCTGTATAACTGGGGAAAACGGAAGATCTGCGGTGAAAACATCGGCATAGCGATC
JMFF008A10+ GGGCGGCTGTATAACTGGGGAAAACGGAAGATCTGCGGTGAAAACATCGGCATAGCGATC
JMSF033C07+ GGGCGGCTGTATAACTGGGGAAAACGGAAGATCTGCGGTGAAAACATCGGCATAGCGATC
____________________________________________________________
consensus GGGCGGCTGTATAACTGGGGAAAACGGAAGATCTGCGGTGAAAACATCGGCATAGCGATC
. : . : . : . : . : . :
JMFF051L23+ TCATTAGCATCATCTTCTCCATCCCTCTTTTCACCTTTCCCTTTTCCTGCTTCTCTGTTT
JMFF008A10+ TCATTAGCATCATCTTCTCCATCCCTCTTTTCACCTTTCCCTTTTCCTGCTTCTCTGTTT
JMSF033C07+ TCATTAGCATCATCTTCTCCATCCCTCTTTTCACCTTTCCCTTTTCCTGCTTCTCTGCTT
____________________________________________________________
consensus TCATTAGCATCATCTTCTCCATCCCTCTTTTCACCTTTCCCTTTTCCTGCTTCTCTGTTT
. : . : . : . : . : . :
JMFF051L23+ CAAGTTTTGGAGCTCCGAATCTCCGATGACCCAGATTACACCTTCCTGTGTTTGGTTAC
JMFF008A10+ CAAGTT
JMSF033C07+ CAAGTTTTGGAGCTCCGAATCTCCGATGACCCAGATTACACCTTCCTGTGTTTGGTTACC
____________________________________________________________
consensus CAAGTTTTGGAGCTCCGAATCTCCGATGACCCAGATTACACCTTCCTGTGTTTGGTTACC