Contig 012076:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF032C08-                                                                   AGT
                      ____________________________________________________________
consensus                                                                      AGT
 
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rJMSF032C08-          TATCTTATCACGCTGTTTAGCCCAACTAAAAAAAAAAAGAAGTAAAGAGTGCAAATCCAG
                      ____________________________________________________________
consensus             TATCTTATCACGCTGTTTAGCCCAACTAAAAAAAAAAAGAAGTAAAGAGTGCAAATCCAG
 
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rJMFF044O17-                 GTCCATGAACAGAAGAAGAATAGAGCATAGAACTACATAGTATACAGACTGAC
rJMSF032C08-          CGAAAGTGTCCATGAACAGAAGAAGAATAGAGCATAGAACTACATAGTATACAGACTGAC
rJMSF032I22-                                                     ATAGTATACAGACTGAC
                      ____________________________________________________________
consensus             CGAAAGTGTCCATGAACAGAAGAAGAATAGAGCATAGAACTACATAGTATACAGACTGAC
 
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rJMFF044O17-          TGCGAGTCTGTCATGATCGTTTTTATTGCTTGCAAACACAAAGAAAACCATGGCTTCCTC
rJMSF032C08-          TGCGAGTCTGTCATGATCGTTTTTATTGCTTGCAAACNCAAAGAAAACCATGGCTTCCTC
rJMSF032I22-          TGCGAGTCTGTCATGATCGTTTTTATTGCTTGCAAACACAAAGAAAACCATGGCTTCCTC
                      ____________________________________________________________
consensus             TGCGAGTCTGTCATGATCGTTTTTATTGCTTGCAAACACAAAGAAAACCATGGCTTCCTC
 
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rJMFF044O17-          AACCATTATCGAAATGACATCAACCAAAGGCTCATCAAGAGAAGTATCGATCCTCACTA 
rJMSF032C08-          AACCATTATCGAAATGACATCAACCAAAGGCTCATCAAGAGAAGTATCGATCCTCACTAA
rJMSF032I22-          AACCATTATCGAAATGACATCAACCAAAGGCTCATCAAGAGAAGTATCGATCCTCACTAA
                      ____________________________________________________________
consensus             AACCATTATCGAAATGACATCAACCAAAGGCTCATCAAGAGAAGTATCGATCCTCACTAA
 
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rJMSF032C08-          NATCAACTCGCANGTTACTACAATCGTTATGCCTAGGCTTACAGCTTTGAAGCGGCTTCC
rJMSF032I22-          GATCAACTCGCATGTTACTACAATCGTTATGCCTAGGCTTACAGCTTTGAAGCGGCTTCC
                      ____________________________________________________________
consensus             GATCAACTCGCATGTTACTACAATCGTTATGCCTAGGCTTACAGCTTTGAAGCGGCTTCC
 
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rJMSF032C08-          TTATCCAAAAACCACACCAATTCCTTTTCTGGNGAAACCATTTGCACGGGCAGTGAAATG
rJMSF032I22-          TTATCCAAAAACCACACCAATTCCTTTTCTGGTGAAACCATTTGCACGGGCAGTGAAATG
                      ____________________________________________________________
consensus             TTATCCAAAAACCACACCAATTCCTTTTCTGGTGAAACCATTTGCACGGGCAGTGAAATG
 
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rJMSF032C08-          GGATTTTGACTGCTGCCTAANGCTGTGCCCACAGCATCCGCCTTANATGCGCCNGGTACA
rJMSF032I22-          GGATTTTGACTGCTGCCTAATGCTGTGCCCACAGCATCCGCCTTAGATGCGCCTGGTACA
                      ____________________________________________________________
consensus             GGATTTTGACTGCTGCCTAATGCTGTGCCCACAGCATCCGCCTTAGATGCGCCTGGTACA
 
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rJMSF032C08-          ACAAGAGCAACGTTTGCGGAANAGTTGATAACAGGGAGCGTGAAAGTGATCCTTTCCGGA
rJMSF032I22-          ACAAGAGCAACGTTTGCGGAAGAGTTGATAACAGGGAGCGTGAAAGTGATCCTTTCCGGA
                      ____________________________________________________________
consensus             ACAAGAGCAACGTTTGCGGAAGAGTTGATAACAGGGAGCGTGAAAGTGATCCTTTCCGGA
 
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rJMSF032C08-          GGGGGTTTTGGANAGTCCTTGATGAACGTAACCCACTTCTCTTTCTCTTGGANAANAGGA
rJMSF032I22-          GGGGGTTTTGGAGAGTCCTTGATGAACGTAACCCACTTCTCTTTCTCTTGGAGAAGAGGA
                      ____________________________________________________________
consensus             GGGGGTTTTGGAGAGTCCTTGATGAACGTAACCCACTTCTCTTTCTCTTGGAGAAGAGGA
 
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rJMSF032C08-          TGCCCGGGAAATAGAGAAGCAAGATGCCCATCAGGGCCCATGCCCAAAAGCATTAGGTCA
rJMSF032I22-          TGCCCGGGAAATAGAGAAGCAAGATGCCCATCAGGGCCCATGCCCAAAAGCATTAGGTCA
JMSF032C08+                 GGAAATAGAGAAGCAAGATGCCCATCAGGGCCCATGCCCAAAAGCATTAGGTCA
                      ____________________________________________________________
consensus             TGCCCGGGAAATAGAGAAGCAAGATGCCCATCAGGGCCCATGCCCAAAAGCATTAGGTCA
 
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rJMSF032C08-          AATTGTGGAAATCCACTTGCCTCANATGTGCTTACGATCTTCAGTTTCACCAAATGCTTT
rJMSF032I22-          AATTGTGGAAATCCACTTGCCTCAGATGTGCTTACGATCTTCAGTTTCACCAAATGCTTT
JMSF032C08+           AATTGTGGAAATCCACTTGCNTCAGATGTGCTTACGATCTTCAGTTTCACCAAATGCTTT
                      ____________________________________________________________
consensus             AATTGTGGAAATCCACTTGCCTCAGATGTGCTTACGATCTTCAGTTTCACCAAATGCTTT
 
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rJMSF032C08-          ANACAGGTTTCATAATCCTCTGCTGCACCTTCAGCTGACAAGGCATCATTTATGGC    
rJMSF032I22-          AGACAGGTTTCATAATCCTCTGCTGCACCTTCAGCTGACAAGGCATCATTTATGGCGTAT
JMSF032C08+           AGACAGGTTTCATAATCCTCTGCTGCACCTTCAGCTGACAAGGCATCATTTATGGCGTAT
JMFF044O17+                                           AGCTGACAAGGCATCATTTATGGCGTAT
JMSF032I22+                          TCCTCTGCTGCACCTTCAGCTGACAAGGCATCATTTATGGCGTAT
                      ____________________________________________________________
consensus             AGACAGGTTTCATAATCCTCTGCTGCACCTTCAGCTGACAAGGCATCATTTATGGCGTAT
 
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rJMSF032I22-          ACATTACCAGCAGGAATAGGTACCTTGGA                               
JMSF032C08+           ACATTACCAGCAGGAATAGGTACCTTGGATAGAAAACCATTATAAGCGAGCAAGTAATTG
JMFF044O17+           ACATTACCAGCAGGAATAGGTACCTTGGATAGAAAACCATTATAAGCGAGCAAGTAATTG
JMSF032I22+           ACATTACCAGCAGGAATAGGTACCTTGGATAGAAAACCATTATAAGCGAGCAAGTAATTG
                      ____________________________________________________________
consensus             ACATTACCAGCAGGAATAGGTACCTTGGATAGAAAACCATTATAAGCGAGCAAGTAATTG
 
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JMSF032C08+           CTATCCGGGTGATCCTTTGGAACCACACGCTCATCCACCCAGAAAATGTGCCATTTTGAC
JMFF044O17+           CTATCCGGGTGATCCTTTGGAACCACACGCTCATCCACCCAGAAAATGTGCCATTTTGAC
JMSF032I22+           CTATCCGGGTGATCCTTTGGAACCACACGCTCATCCACCCAGAAAATGTGCCATTTTGAC
                      ____________________________________________________________
consensus             CTATCCGGGTGATCCTTTGGAACCACACGCTCATCCACCCAGAAAATGTGCCATTTTGAC
 
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JMSF032C08+           CAGTCTACAGAGTTGATATAAGGAGGCTCCAGCAATTTACTGAGACAGTTTATAAGAGAC
JMFF044O17+           CAGTCTACAGAGTTGATATAAGGAGGCTCCAGCAATTTACTGAGACAGTTTATAAGAGAC
JMSF032I22+           CAGTCTACAGAGTTGATATAAGGAGGCTCCAGCAATTTACTGAGACAGTTTATAAGAGAC
                      ____________________________________________________________
consensus             CAGTCTACAGAGTTGATATAAGGAGGCTCCAGCAATTTACTGAGACAGTTTATAAGAGAC
 
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JMSF032C08+           CCGCCGGAGACAACGACGGAGAACGAAGCTCTCTCCTTGCAAACTTTCTCCGATAAATCG
JMFF044O17+           CCGCCGGAGACAACGACGGAGAACGAAGCTCTCTCCTTGCAAACTTTCTCCGATAAATCG
JMSF032I22+           CCGCCGGAGACAACGACGGAGAACGAAGCTCTCTCCTTGCAAACTTTCTCCGATAAATCG
                      ____________________________________________________________
consensus             CCGCCGGAGACAACGACGGAGAACGAAGCTCTCTCCTTGCAAACTTTCTCCGATAAATCG
 
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JMSF032C08+           GCAGTGTATTTCGCCACAGAAGCCTTCAGTTCCTCCTCCGAATCGAACACTTGAACTTTC
JMFF044O17+           GCAGTGTATTTCGCCACAGAAGCCTTCAGTTCCTCCTCCGAATCGAACACTTGAACTTTC
JMSF032I22+           GCAGTGTATTTCGCCACAGAAGCCTTCAGTTCCTCCTCCGAATCGAACACTTGAACTTTC
                      ____________________________________________________________
consensus             GCAGTGTATTTCGCCACAGAAGCCTTCAGTTCCTCCTCCGAATCGAACACTTGAACTTTC
 
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JMSF032C08+           GCTTTCCCCTTCCCAGTCACTGCTTCCGCCATCGATGATGCTTTCGTTCGGGATCCAAAT
JMFF044O17+           GCTTTCCCCTTCCCAGTCACTGCTTCCGCCATCGATGATGCTTTCGTTCGGGATCCAAAT
JMSF032I22+           GCTTTCCCCTTCCCAGTCACTGCTTCCGCCATCGATGATGCTTTCGTTCGGGATCCAAAT
                      ____________________________________________________________
consensus             GCTTTCCCCTTCCCAGTCACTGCTTCCGCCATCGATGATGCTTTCGTTCGGGATCCAAAT
 
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JMSF032C08+           ACTTTAATATCCTTATCTGTTGAGGACACGCTTTTCAGCCAAACGGAGCAAGATGGCGGC
JMFF044O17+           ACTTTAATATCCTTATCTGTTGAGGACACGCTTTTCAGCCAAACGGAGCAAGATGGCGGC
JMSF032I22+           ACTTTAATATCCTTATCTGTTGAGGACACGCTTTTCAGCCAAACGGAGCAAGATGGCGGC
                      ____________________________________________________________
consensus             ACTTTAATATCCTTATCTGTTGAGGACACGCTTTTCAGCCAAACGGAGCAAGATGGCGGC
 
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JMSF032C08+           GTTGCTGAGAAAGAGGCGCAGGTCAACGGAACGGACGGCGATGAACGCCGGAAAGAAGAG
JMFF044O17+           GTTGCTGAGAAAGAGGCGCAGGTCAACGGAACGGACGGCGATGAACGCCGGAAAGAAGAG
JMSF032I22+           GTTGCTGAGAAAGAGGCGCAGGTCAACGGAACGGACGGCGATGAACGCCGGAAAGAAGAG
                      ____________________________________________________________
consensus             GTTGCTGAGAAAGAGGCGCAGGTCAACGGAACGGACGGCGATGAACGCCGGAAAGAAGAG
 
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JMSF032C08+           AAACGGATAGGTAAAGTGCGCACGTTAGAAGAAGAGAGCAGAGGAGGTGAGGCGGC    
JMFF044O17+           AAACGGATAGGTAAAGTGCGCACGTTAGAAGAAGAGAGCAGAGGAGGTGAGGCGGCGATG
JMSF032I22+           AAACGGATAGGTAAAGTGCGCACGTTAGAAGAAGAGAGCAGAGGAGGTGAGGCGGCGATG
                      ____________________________________________________________
consensus             AAACGGATAGGTAAAGTGCGCACGTTAGAAGAAGAGAGCAGAGGAGGTGAGGCGGCGATG
 
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JMFF044O17+           CGCATTGTAGACTCCGCAAGCTTTTATACGGAATTGTGGAAAGACCGTCCACC       
JMSF032I22+           CGCATTGTAGACTCCGCAAGCTTTTATACGGAATTGTGGAAAGACCGTCCACCGGAGACC
                      ____________________________________________________________
consensus             CGCATTGTAGACTCCGCAAGCTTTTATACGGAATTGTGGAAAGACCGTCCACCGGAGACC