Contig 012075:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF032H20Sequence691012075 (2)ref|XP_010647822.1|5e-101PREDICTED: cyclin-J18 isoform X1 [Vitis vinifera]681012075 (2)emb|CBI26779.3|6e-33unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF032H20-                                                     CATTCATATTGATTCGC
                      ____________________________________________________________
consensus                                                        CATTCATATTGATTCGC
 
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rJMSF032H20-          AGGTTCTCACGAGATGATGTGCTCTCATTGATCATTAATATATATCTATACACGTATACT
                      ____________________________________________________________
consensus             AGGTTCTCACGAGATGATGTGCTCTCATTGATCATTAATATATATCTATACACGTATACT
 
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rJMSF032H20-          CCGTATATACCTGCTGATGTGGTCCTGGTGGACCTAAAATAACATAAATCTGTCCCAATT
                      ____________________________________________________________
consensus             CCGTATATACCTGCTGATGTGGTCCTGGTGGACCTAAAATAACATAAATCTGTCCCAATT
 
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rJMSF032H20-          TGCAATAGCAACATGTCATAAATGCCAAGCTCTCAAATTCTGAGAGTCCGTGAACAAAGA
                      ____________________________________________________________
consensus             TGCAATAGCAACATGTCATAAATGCCAAGCTCTCAAATTCTGAGAGTCCGTGAACAAAGA
 
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rJMSF032H20-          ATTTTCTAAGCCAAAGTGCAATGTGCAATTAAGCCATCCACAATCCCAGCCGTCAGTCGT
                      ____________________________________________________________
consensus             ATTTTCTAAGCCAAAGTGCAATGTGCAATTAAGCCATCCACAATCCCAGCCGTCAGTCGT
 
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rJMSF032H20-          GGAACCATTTCTGCTGCCTCTTCCATCCCAATGGCTAATGTTGTCGTCCTAACTCCTAAC
                      ____________________________________________________________
consensus             GGAACCATTTCTGCTGCCTCTTCCATCCCAATGGCTAATGTTGTCGTCCTAACTCCTAAC
 
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rJMSF032H20-          AACAGGGCATCCTTCTACATCCACTTCCCACAGACATACCTCTAAACTCTAAACCCCCCC
                      ____________________________________________________________
consensus             AACAGGGCATCCTTCTACATCCACTTCCCACAGACATACCTCTAAACTCTAAACCCCCCC
 
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rJMSF032H20-          TCAAATGAAAGTAGTTGGTGAGGTTCAACGCTCAAACACATGCTTCAGAATGATTCTGAC
JMSF032H20+                                        GCTCAAACACATGCTTCAGAATGATTCTGAC
                      ____________________________________________________________
consensus             TCAAATGAAAGTAGTTGGTGAGGTTCAACGCTCAAACACATGCTTCAGAATGATTCTGAC
 
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rJMSF032H20-          CCTTCCCACAATATCCTGTTCCTTGCATGAGGTAACCAACACAACCCAAGGGAGAACAGG
JMSF032H20+           CCTTCCCACAATATCCTGTTCCTTGCATGAGGTAACCAACACAACCCAAGGGAGAACAGG
                      ____________________________________________________________
consensus             CCTTCCCACAATATCCTGTTCCTTGCATGAGGTAACCAACACAACCCAAGGGAGAACAGG
 
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rJMSF032H20-          GAATTCCCACCTTTGTACTGGAACTGTAATAACATACGTGGCAACCAATATAGATGCAGC
JMSF032H20+           GAATTCCCACCTTTGTACTGGAACTGTAATAACATACGTGGCAACCAATATAGATGCAGC
                      ____________________________________________________________
consensus             GAATTCCCACCTTTGTACTGGAACTGTAATAACATACGTGGCAACCAATATAGATGCAGC
 
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rJMSF032H20-          TAAACAATTAGAAGTATTGAAAAGATCCAAAAACTCCTCCTTTTCATAAAGTAGGTCCAT
JMSF032H20+           TAAACAATTAGAAGTATTGAAAAGATCCAAAAACTCCTCCTTTTCATAAAGTAGGTCCAT
                      ____________________________________________________________
consensus             TAAACAATTAGAAGTATTGAAAAGATCCAAAAACTCCTCCTTTTCATAAAGTAGGTCCAT
 
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rJMSF032H20-          GATATCCATGCAAGCTTCAAAATTCATATGTTCACCAACCCGTGCAACATCCTTCAATTG
JMSF032H20+           GATATCCATGCAAGCTTCAAAATTCATATGTTCACCAACCCGTGCAACATCCTTCAATTG
                      ____________________________________________________________
consensus             GATATCCATGCAAGCTTCAAAATTCATATGTTCACCAACCCGTGCAACATCCTTCAATTG
 
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rJMSF032H20-          AATA                                                        
JMSF032H20+           AATAACAAGATCCTCCAGGAATCTATAAGCAATGTTTGACACGCCAATCTCAAATTTCAG
                      ____________________________________________________________
consensus             AATAACAAGATCCTCCAGGAATCTATAAGCAATGTTTGACACGCCAATCTCAAATTTCAG
 
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JMSF032H20+           TACCTGCATTAGCAATAATTCAGCTTCCAAAAAGTCCCTTGTTGTAAAATGCTGCTCTGT
                      ____________________________________________________________
consensus             TACCTGCATTAGCAATAATTCAGCTTCCAAAAAGTCCCTTGTTGTAAAATGCTGCTCTGT
 
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JMSF032H20+           AATACTCTTGTCTCCTAATGACTTTAAACACTTGACAGATAGGGGAGGAGACATGTGTAT
                      ____________________________________________________________
consensus             AATACTCTTGTCTCCTAATGACTTTAAACACTTGACAGATAGGGGAGGAGACATGTGTAT
 
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JMSF032H20+           TTTGCAAGAGATCCATACAGAAGCAAGAGCAAATAACTGCAAGTTGCTTTCTCTCATGGG
                      ____________________________________________________________
consensus             TTTGCAAGAGATCCATACAGAAGCAAGAGCAAATAACTGCAAGTTGCTTTCTCTCATGGG
 
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JMSF032H20+           ATCTAAAAGCCAGTTTTCTTTGTCCATGCCCTTTCTGGAGAGAGAGGGGTAAAACCGGTC
                      ____________________________________________________________
consensus             ATCTAAAAGCCAGTTTTCTTTGTCCATGCCCTTTCTGGAGAGAGAGGGGTAAAACCGGTC
 
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JMSF032H20+           GGCGAAAAGCGAAAGCGCGGAGTATTTGACAATCGGAGAGACATGCAGATCGTGAGCGGA
                      ____________________________________________________________
consensus             GGCGAAAAGCGAAAGCGCGGAGTATTTGACAATCGGAGAGACATGCAGATCGTGAGCGGA
 
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JMSF032H20+           CTGGATAAGAAATCCCAGCACACGACGGCGACGGAGCAATGCATCGTTCTTCATCTCTCC
                      ____________________________________________________________
consensus             CTGGATAAGAAATCCCAGCACACGACGGCGACGGAGCAATGCATCGTTCTTCATCTCTCC