Contig 012065:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006B23Sequence295012065 (3)ref|XP_007019299.1|5e-30Hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides,ATP-519001038 (10)gb|AAT67159.1|2e-67digalactosyldiacylglycerol synthase [Nicotiana tabacum]
JMSF031K17Sequence669012065 (3)ref|XP_004248109.1|3e-115PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 [Solanum lycopersicu689007158 (2)ref|XP_009798713.1|5e-47PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X2 [Nicotian
JMSF052I07Sequence690012065 (3)ref|XP_004248109.1|8e-122PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 [Solanum lycopersicu923007158 (2)ref|XP_009798713.1|3e-58PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X2 [Nicotian

Alignment

This contig is upended


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JMSF052I07+                                TCAGCAAGGNCACTTGGTAAAGTTGCACTGAAAAGCAAA
JMSF031K17+                                                              AAAAGCAAA
                      ____________________________________________________________
consensus                                  TCAGCAAGGNCACTTGGTAAAGTTGCACTGAAAAGCAAA
 
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JMSF052I07+           GTTTGGCGATTCTCACTTAGATGGGTGAGAACTGTGTGCAATTGCTCAGCAAACCCCATG
JMSF031K17+           GTTTGGCGATTCTCACTTAGATGGGTGAGAACTGTGTGCAATTGCTCAGCAAACCCCATG
                      ____________________________________________________________
consensus             GTTTGGCGATTCTCACTTAGATGGGTGAGAACTGTGTGCAATTGCTCAGCAAACCCCATG
 
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JMSF052I07+           CTAAATAGACAATCTGCTTCATCAAACACTACATATTCCACAGAGCGCAGGGAAAAATCA
JMSF031K17+           CTAAATAGACAATCTGCTTCATCAAACACTACATATTCCACAGAGCGCAGGGAAAAATCA
                      ____________________________________________________________
consensus             CTAAATAGACAATCTGCTTCATCAAACACTACATATTCCACAGAGCGCAGGGAAAAATCA
 
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JMSF052I07+           TCTACCTCTGATAAATGATGCATAAGCCGACCAGGAGTTGCAATTATAATATCTGGACTT
JMSF031K17+           TCTACCTCTGATAAATGATGCATAAGCCGACCAGGAGTTGCAATTATAATATCTGGACTT
                      ____________________________________________________________
consensus             TCTACCTCTGATAAATGATGCATAAGCCGACCAGGAGTTGCAATTATAATATCTGGACTT
 
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JMSF052I07+           TGTGCCAATTCTTCAAATTGGCTTTCCATACTATCACCACCAACTAATAAGCTAACACGG
JMSF031K17+           TGTGCCAATTCTTCAAATTGGCTTTCCATACTATCACCACCAACTAATAAGCTAACACGG
                      ____________________________________________________________
consensus             TGTGCCAATTCTTCAAATTGGCTTTCCATACTATCACCACCAACTAATAAGCTAACACGG
 
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JMSF052I07+           AGATCTGTGAAGCGACCAAGCTCTTTGGTGAACTTGAGGGTCTGAAGAGCCAAATCTCGG
JMSF031K17+           AGATCTGTGAAGCGACCAAGCTCTTTGGTGAACTTGAGGGTCTGAAGAGCCAAATCTCGG
                      ____________________________________________________________
consensus             AGATCTGTGAAGCGACCAAGCTCTTTGGTGAACTTGAGGGTCTGAAGAGCCAAATCTCGG
 
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JMSF052I07+           GTGGGAGAGAGTATGAGAGCTCTAGTTCCAGCCTGGGGCACGTGTTGCTGGAGCTTTTCG
JMSF006B23+                                                                     CG
JMSF031K17+           GTGGGAGAGAGTATGAGAGCTCTAGTTCCAGCCTGGGGCACGTGTTGCTGGAGCTTTTCG
                      ____________________________________________________________
consensus             GTGGGAGAGAGTATGAGAGCTCTAGTTCCAGCCTGGGGCACGTGTTGCTGGAGCTTTTCG
 
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JMSF052I07+           AGCATGGGGAGCAGAAATGCAGCGGTTTTTCCGGAGCCAGTCCGAGCCATGGCGACGACG
JMSF006B23+           AGCATGGGGAGCAGAAATGCAGCGGTTTTTCCGGAGCCAGTCCGAGCCATGGCGACGACG
JMSF031K17+           AGCATGGGGAGCAGAAATGCAGCGGTTTTTCCGGAGCCAGTCCGAGCCATGGCGACGACG
                      ____________________________________________________________
consensus             AGCATGGGGAGCAGAAATGCAGCGGTTTTTCCGGAGCCAGTCCGAGCCATGGCGACGACG
 
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JMSF052I07+           TCGTTGCCGGAAAGGATGAGCGGCATGGTCTTCCGCTGAATTGGGGTGGGGACTCTGTAG
JMSF006B23+           TCGTTGCCGGAAAGGATGAGCGGCATGGTCTTCCGCTGAATTGGGGTGGGGACTCTGTAG
JMSF031K17+           TCGTTGCCGGAAAGGATGAGCGGCATGGTCTTCCGCTGAATTGGGGTGGGGACTCTGTAG
                      ____________________________________________________________
consensus             TCGTTGCCGGAAAGGATGAGCGGCATGGTCTTCCGCTGAATTGGGGTGGGGACTCTGTAG
 
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JMSF052I07+           CCCTTACGCTTAATTCCTCTGAAGACATTGGGGCTGAGCCCCATCGATTCGAAACCTCCA
JMSF006B23+           CCCTTACGCTTAATTCCTCTGAAGACATTGGGGCTGAGCCCCATCGATTCGAAACCTCCA
JMSF031K17+           CCCTTACGCTTAATTCCTCTGAAGACATTGGGGCTGAGCCCCATCGATTCGAAACCTCCA
                      ____________________________________________________________
consensus             CCCTTACGCTTAATTCCTCTGAAGACATTGGGGCTGAGCCCCATCGATTCGAAACCTCCA
 
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JMSF052I07+           GACTTGGATTTCTTCTGCTCCTTCTGCTTCCGCTTAAGCTCTGCTTTCGAGCTCACCAGA
JMSF006B23+           GACTTGGATTTCTTCTGCTCCTTCTGCTTCCGCTTAAGCTCTGCTTTCGAGCTCACCAGA
JMSF031K17+           GACTTGGATTTCTTCTGCTCCTTCTGCTTCCGCTTAAGCTCTGCTTTCGAGCTCACCAGA
                      ____________________________________________________________
consensus             GACTTGGATTTCTTCTGCTCCTTCTGCTTCCGCTTAAGCTCTGCTTTCGAGCTCACCAGA
 
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JMSF052I07+           ATTCCAGTCCCCTTCGCCATTGCAGCCCTTCAGGAGGCAGAAGGGATTC           
JMSF006B23+           ATTCCAGTCCCCTTCGCCATTGCAGCCCTTCAGGAGGCAGAAGGGATTC           
JMSF031K17+           ATTCCAGTCCCCTTCGCCATTGCAGCCCTTCAGGAGGCAGAAGGGATTCAGCGAAAGGCC
                      ____________________________________________________________
consensus             ATTCCAGTCCCCTTCGCCATTGCAGCCCTTCAGGAGGCAGAAGGGATTCAGCGAAAGGCC