Contig 012063:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-                GGACTTATCAATTTCTCAAATTGTGCCCAATTTAACAAACCTTTTACCTTAAGA
                      ____________________________________________________________
consensus                   GGACTTATCAATTTCTCAAATTGTGCCCAATTTAACAAACCTTTTACCTTAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-          AATCAGAGTACATTGATGTCTACAACAATGTAAATATATCGTCATCGTCATCGTCCATCA
rJMSF052K01-                 GTACATTGATGTCTACAACAATGTAAATATATCGTCATCGTCATCGTCCATCA
                      ____________________________________________________________
consensus             AATCAGAGTACATTGATGTCTACAACAATGTAAATATATCGTCATCGTCATCGTCCATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-          CCTGGGAAGCAGACGGACTTAAAAGCCCGTGGGAGTACAAGATTCAATAAGATTGAAACT
rJMSF052K01-          CCTGGGAAGCAGACGGACTTAAAAGCCCGTGGGAGTACAAGATTCAATAAGATTGAAACT
                      ____________________________________________________________
consensus             CCTGGGAAGCAGACGGACTTAAAAGCCCGTGGGAGTACAAGATTCAATAAGATTGAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-          GACAGTATCTATTTCTTTATAAGTTGCTGATACAGACAAAGGAGCTTTGAATTTGGAAGG
rJMSF052K01-          GACAGTATCTATTTCTTTATAAGTTGCTGATACAGACAAAGGAGCTTTGAATTTGGAAGG
                      ____________________________________________________________
consensus             GACAGTATCTATTTCTTTATAAGTTGCTGATACAGACAAAGGAGCTTTGAATTTGGAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-          TAATGCTAAGAAAATGACGATTTCGACTGCCTCCTATCGCTCCTTAAGTTCCTGCTCAAA
rJMSF052K01-          TAATGCTAAGAAAATGACGATTTCGACTGCCTCCTATCGCTCCTTAAGTTCCTGCTCAAA
                      ____________________________________________________________
consensus             TAATGCTAAGAAAATGACGATTTCGACTGCCTCCTATCGCTCCTTAAGTTCCTGCTCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-          TTGAAGTAATTTTTCACGAAGAGGTTGCAGAAACAATCTAAAATCCTGTTTGATCCGCTG
rJMSF052K01-          TTGAAGTAATTTTTCACGAAGAGGTTGCAGAAACAATCTAAAATCCTGTTTGATCCGCTG
                      ____________________________________________________________
consensus             TTGAAGTAATTTTTCACGAAGAGGTTGCAGAAACAATCTAAAATCCTGTTTGATCCGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-          CTTATCTTTTGGTTCAAGATCCTTGTCTTCACTTAGACTTGCCTCAATCTGCAAGTCATC
rJMSF052K01-          CTTATCTTTTGGTTCAAGATCCTTGTCTTCACTTAGACTTGCCTCAATCTGCAAGTCATC
JMSF052K01+                       TTCAAGATCCTTGTCTTCACTTAGACTTGCCTCAATCTGCAAGTCATC
                      ____________________________________________________________
consensus             CTTATCTTTTGGTTCAAGATCCTTGTCTTCACTTAGACTTGCCTCAATCTGCAAGTCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-          CAGCTCACCGAACGAGAACTCTGGTATCTCTATATGGCCCTTGACCACCTTCTTCTCAGC
rJMSF052K01-          CAGCTCACCGAACGAGAACTCTGGTATCTCTATATGGCCCTTGACCACCTTCTTCTCAGC
JMSF052K01+           CAGCTCACCGAACGAGAACTCTGGTATCTCTATATGGCCCTTGACCACCTTCTTCTCAGC
                      ____________________________________________________________
consensus             CAGCTCACCGAACGAGAACTCTGGTATCTCTATATGGCCCTTGACCACCTTCTTCTCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-          TCCAACAAGCCACTCACCTTTCACCTTTAGTGTTAGCTCATATGTGTAGCCAACACGTTT
rJMSF052K01-          TCCAACAAGCCACTCACCTTTCACCTTTAGTGTTAGCTCATATGTGTAGCCAACACGTTT
JMSF052K01+           TCCAACAAGCCACTCACCTTTCACCTTTAGTGTTAGCTCATATGTGTAGCCAACACGTTT
JMSF031D09+                  AGCCACTCACCTTTCACCTTTAGTGTTAGCTCATATGTGTAGCCAACACGTTT
                      ____________________________________________________________
consensus             TCCAACAAGCCACTCACCTTTCACCTTTAGTGTTAGCTCATATGTGTAGCCAACACGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-          TTTGTTCCGCACAGTCACCAAGAATGCATCACCGTTACATTTTGTTACTTCTGTTATTTC
rJMSF052K01-          TTTGTTCCGCACAGTCACCAAGAATGCATCACCGTTACATTTTGTTACTTCTGTTATTTC
JMSF052K01+           TTTGTTCCGCACAGTCACCAAGAATGCATCACCGTTACATTTTGTTACTTCTGTTATTTC
JMSF031D09+           TTTGTTCCGCACAGTCACCAAGAATGCATCACCGTTACATTTTGTTACTTCTGTTATTTC
                      ____________________________________________________________
consensus             TTTGTTCCGCACAGTCACCAAGAATGCATCACCGTTACATTTTGTTACTTCTGTTATTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-          AGCTTTGCCGCCAGACAGTTCCAGAGATCCCACAGATACAAGCAACTCCTTAATCCTATC
rJMSF052K01-          AGCTTTGCCGCCAGACAGTTCCAGAGATCCCACAGATACAAGCAACTCCTTAATCCTATC
JMSF052K01+           AGCTTTGCCGCCAGACAGTTCCAGAGATCCCACAGATACAAGCAACTCCTTAATCCTATC
JMSF031D09+           AGCTTTGCCGCCAGACAGTTCCAGAGATCCCACAGATACAAGCAACTCCTTAATCCTATC
                      ____________________________________________________________
consensus             AGCTTTGCCGCCAGACAGTTCCAGAGATCCCACAGATACAAGCAACTCCTTAATCCTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031D09-          ATTTGCCCATTTATTTAGACTTTTCTCTTCCCAAGTTCCAGCCCTATTCCAGGCG     
rJMSF052K01-          ATTTGCCCATTTATTTAGACTTTTCTCTTCCCAAGTTCCAGCCCTATTCCAGGCGGAGCC
JMSF052K01+           ATTTGCCCATTTATTTAGACTTTTCTCTTCCCAAGTTCCAGCCCTATTCCAGGCGGAGCC
JMSF031D09+           ATTTGCCCATTTATTTAGACTTTTCTCTTCCCAAGTTCCAGCCCTATTCCAGGCGGAGCC
                      ____________________________________________________________
consensus             ATTTGCCCATTTATTTAGACTTTTCTCTTCCCAAGTTCCAGCCCTATTCCAGGCGGAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K01-          AAGATGGGTGGGGGTTTGATTGTTAGGTTGGTCCCCTGGGTTGAGCTTCCGGGGAACCGG
JMSF052K01+           AAGATGGGTGGGGGTTTGATTGTTAGGTTGGTCCCCTGGGTTGAGCTTCCGGGGAACCGG
JMSF031D09+           AAGATGGGTGGGGGTTTGATTGTTAGGTTGGTCCCCTGGGTTGAGCTTCCGGGGAACCGG
                      ____________________________________________________________
consensus             AAGATGGGTGGGGGTTTGATTGTTAGGTTGGTCCCCTGGGTTGAGCTTCCGGGGAACCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K01-          CAGGGGAGCAGCGTCTGCGGTCTTCTCCCTAACCCAGTAGGTGTACGACGGCGCAGTCTC
JMSF052K01+           CAGGGGAGCAGCGTCTGCGGTCTTCTCCCTAACCCAGTAGGTGTACGACGGCGCAGTCTC
JMSF031D09+           CAGGGGAGCAGCGTCTGCGGTCTTCTCCCTAACCCAGTAGGTGTACGACGGCGCAGTCTC
                      ____________________________________________________________
consensus             CAGGGGAGCAGCGTCTGCGGTCTTCTCCCTAACCCAGTAGGTGTACGACGGCGCAGTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K01-          CTCCTTAGGCTTCTCCTCGGCAGCGGCGGCGGCGGCGGCAGCTGCACTTCCCTCCATTAT
JMSF052K01+           CTCCTTAGGCTTCTCCTCGGCAGCGGCGGCGGCGGCGGCAGCTGCACTTCCCTCCATTAT
JMSF031D09+           CTCCTTAGGCTTCTCCTCGGCAGCGGCGGCGGCGGCGGCAGCTGCACTTCCCTCCATTAT
                      ____________________________________________________________
consensus             CTCCTTAGGCTTCTCCTCGGCAGCGGCGGCGGCGGCGGCAGCTGCACTTCCCTCCATTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K01-          TGTTATTATTACAAATCAAGATCAAGATCAAGAGCTTAAATCTTAATCCTTATCAGCAAT
JMSF052K01+           TGTTATTATTACAAATCAAGATCAAGATCAAGAGCTTAAATCTTAATCCTTATCAGCAAT
JMSF031D09+           TGTTATTATTACAAATCAAGATCAAGATCAAGAGCTTAAATCTTAATCCTTATCAGCAAT
                      ____________________________________________________________
consensus             TGTTATTATTACAAATCAAGATCAAGATCAAGAGCTTAAATCTTAATCCTTATCAGCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K01-          ATAACGACAACGGATCTCAATGGCACAGCGGAGAA                         
JMSF052K01+           ATAACGACAACGGATCTCAATGGCACAGCGGAGAATGACGATTT                
JMSF031D09+           ATAACGACAACGGATCTCAATGGCACAGCGGAGAATGACGATTTTAGAGCAGAAACGAGA
                      ____________________________________________________________
consensus             ATAACGACAACGGATCTCAATGGCACAGCGGAGAATGACGATTTTAGAGCAGAAACGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031D09+           AACCCAATGGGCTACTTTATACTTCAAGATCAAAACTTCAGTTATTATATAATCAGTACT
                      ____________________________________________________________
consensus             AACCCAATGGGCTACTTTATACTTCAAGATCAAAACTTCAGTTATTATATAATCAGTACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF031D09+           AGAAATGAATATAATATTTTTCCCCTAATTAAATAAATGTTAGGGTTCACCTTTCCCATC
                      ____________________________________________________________
consensus             AGAAATGAATATAATATTTTTCCCCTAATTAAATAAATGTTAGGGTTCACCTTTCCCATC