Contig 012060:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011L20Sequence276012060 (4)ref|XP_004239214.1|1e-12PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Solanum lycopers650012060 (4)ref|XP_002277578.1|2e-31PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Vitis vinifera]
JMSF030I15Sequence659012060 (4)ref|XP_002277578.1|4e-32PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Vitis vinifera]642012060 (4)ref|XP_002277578.1|4e-32PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF011L20+                   AGAAAATGACGATGAGGCTACAAACAATCTTCTACTACTGTTTATTAGTAA
rJMSF030I15+                  AAGAAAATGACGATGAGGCTACAAACAATCTTCTACTACTGTTTATTAGTAA
JMSF011L20-                    AGAAAATGACGATGAGGCTACAAACAATCTTCTACTACTGTTTATTAGTAA
JMSF030I15-            GGAATTGAAGAAAATGACGATGAGGCTACAAACAATCTTCTACTACTGTTTATTAGTAA
                      ____________________________________________________________
consensus              GGAATTGAAGAAAATGACGATGAGGCTACAAACAATCTTCTACTACTGTTTATTAGTAA
 
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rJMSF011L20+          TGTTGATTGTGAGCGGCGGTTTGGTAAAGGGGGCCGAGGACTTGCAGGACAGGTGCGGGA
rJMSF030I15+          TGTTGATTGTGAGCGGCGGTTTGGTAAAGGGAGCCGAGGACTTGCAGGACAGGTGCGGGA
JMSF011L20-           TGTTGATTGTGAGCGGCGGTTTGGTAAAGGGGGCCGAGGACTTGCAGGACAGGTGCGGGA
JMSF030I15-           TGTTGATTGTGAGCGGCGGTTTGGTAAAGGGAGCCGAGGACTTGCAGGACAGGTGCGGGA
                      ____________________________________________________________
consensus             TGTTGATTGTGAGCGGCGGTTTGGTAAAGGGGGCCGAGGACTTGCAGGACAGGTGCGGGA
 
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rJMSF011L20+          AAGACATCCAGAAGGTGGTGGCGTGCCTGAGCTTCGCTACTGGGAAGGCGGCGACGCCAG
rJMSF030I15+          AAGACATCCAGAAGGTGGTGGCGTGCCTGAGCTTCGCTACTGGGAAGGCGGCGACGCCAG
JMSF011L20-           AAGACATCCAGAAGGTGGTGGCGTGCCTGAGCTTCGCTACTGGGAAGGCGGCGACGCCAG
JMSF030I15-           AAGACATCCAGAAGGTGGTGGCGTGCCTGAGCTTCGCTACTGGGAAGGCGGCGACGCCAG
                      ____________________________________________________________
consensus             AAGACATCCAGAAGGTGGTGGCGTGCCTGAGCTTCGCTACTGGGAAGGCGGCGACGCCAG
 
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rJMSF011L20+          GGAAGGAGTGCTGCGAGTCGGCGTCGAGCATCGAGGCGAGTGAACGCCCGCTTTGCTTTT
rJMSF030I15+          GGAAGGAGTGCTGCGAGTCGGCGTCGAGCATCGAGGCGAGTGAACGCCCGCTTTGCTTTT
JMSF011L20-           GGAAGGAGTGCTGCGAGTCGGCGTCGAGCATCGAGGCGAGTGAACGCCCGCTTTGCTTTT
JMSF030I15-           GGAAGGAGTGCTGCGAGTCGGCGTCGAGCATCGAGGCGAGTGAACGCCCGCTTTGCTTTT
                      ____________________________________________________________
consensus             GGAAGGAGTGCTGCGAGTCGGCGTCGAGCATCGAGGCGAGTGAACGCCCGCTTTGCTTTT
 
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rJMSF011L20+          GCTATATGATAGAGCAGGTGCACAATGGATCTAACACTCAGATACAGAGCTCCGGTATTC
rJMSF030I15+          GCTATATGATAGAGCAGGTGCACAATGGATCTAACACTCAGATACAGAGCTCCGGTATTC
JMSF011L20-           GCTATATGATAGAGCAGGTGCACAATGGATCTAACACTCAGA                  
JMSF030I15-           GCTATATGATAGAGCAGGTGCACAATGGATCTAACACTCAGATACAGAGCTCCGGTATTC
                      ____________________________________________________________
consensus             GCTATATGATAGAGCAGGTGCACAATGGATCTAACACTCAGATACAGAGCTCCGGTATTC
 
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rJMSF011L20+          AGGAAGCTCGATTGCTTCAGCTCCCTTCTGCTTGCAAGATCAACGACGTCAACGTCACTA
rJMSF030I15+          AGGAAGCTCGATTGCTTCAGCTCCCTTCTGCTTGCAAGATCAACGACGTCAACGTCACTA
JMSF030I15-           AGGAAGCTCGATTGCTTCAGCTCCCTTCTGCTTGCAAGATCAACGACGTCAACGTCACTA
                      ____________________________________________________________
consensus             AGGAAGCTCGATTGCTTCAGCTCCCTTCTGCTTGCAAGATCAACGACGTCAACGTCACTA
 
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rJMSF011L20+          CCTGTCCGAAGCTGTTGAAACTTCCGGCAAACTCTCCCGACATCGCTTTCTTCACCAACA
rJMSF030I15+          CCTGTCCGAAGCTGTTGAAACTTCCGGCAAACTCTCCCGACATCGCTTTCTTCACCAACA
JMSF030I15-           CCTGTCCGAAGCTGTTGAAACTTCCGGCAAACTCTCCCGACATCGCTTTCTTCACCAACA
                      ____________________________________________________________
consensus             CCTGTCCGAAGCTGTTGAAACTTCCGGCAAACTCTCCCGACATCGCTTTCTTCACCAACA
 
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rJMSF011L20+          CTTCTGCTAATTCTGCTTCCACTACTCCCGGCGTCGGAGCAGGCCCTGCTCTCTCCAATG
rJMSF030I15+          CTTCTGCTAATTCTGCTTCCACTACTCCCGGCGTCGGAGCAGGCCCTGCTCCCTCCAATG
JMSF030I15-           CTTCTGCTAATTCTGCTTCCACTACTCCCGGCGTCGGAGCAGGCCCTGCTCCCTCCAATG
                      ____________________________________________________________
consensus             CTTCTGCTAATTCTGCTTCCACTACTCCCGGCGTCGGAGCAGGCCCTGCTCCCTCCAATG
 
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rJMSF011L20+          CCTTCAAGCATAATCCCCTGCAGCTTGCTGGACACTTACCGGTTGCGGTAGCCATCTTCT
rJMSF030I15+          CCTTCAAGCATAATCCCCTGCAGCTTGCTGGACACTTACCGGTTGCGGTAGCCATCTTCT
JMSF030I15-           CCTTCAAGCATAATCCCCTGCAGCTTGCTGGACACTTACCGGTTGCGGTAGCCATCTTCT
                      ____________________________________________________________
consensus             CCTTCAAGCATAATCCCCTGCAGCTTGCTGGACACTTACCGGTTGCGGTAGCCATCTTCT
 
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rJMSF011L20+          ATTTCACATTTTGGAAATTGTTTTAAATGTATGTAGTTACGATAAATATAATTTCTATGC
rJMSF030I15+          ATTTCACATTTTGGAAATTGTTTTAAATGTATGTAGTTACGATAAATATAATTTCTATGC
JMSF030I15-           ATTTCACATTTTGGAAATTGTTTTAAATGTATGTAGTTACGATAAATATAATTTCTATGC
                      ____________________________________________________________
consensus             ATTTCACATTTTGGAAATTGTTTTAAATGTATGTAGTTACGATAAATATAATTTCTATGC
 
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rJMSF011L20+          TGGCTTAGAACACCATACTTATATTTTTAAAATATTTACCTCTGGAATGTAATCTT    
rJMSF030I15+          TGGCTTAGAACACCATACTTATATTTTTAAAATATTTACCTCT                 
JMSF030I15-           TGGCTTAGAACACCATACTTATATTTTTAAAATATTTACCTCTGGAATGTAATCTTTATG
                      ____________________________________________________________
consensus             TGGCTTAGAACACCATACTTATATTTTTAAAATATTTACCTCTGGAATGTAATCTTTATG