Contig 012056:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024N13Sequence450012056 (2)ref|XP_006343610.1|4e-66PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like isoform X1 [Solanum tuber778007148 (2)gb|KDO51195.1|1e-48hypothetical protein CISIN_1g0096412mg, partial [Citrus sinensis]
JMSF030B05Sequence592012056 (2)ref|XP_004134588.1|4e-51PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis sativus] ref|XP_792007148 (2)ref|XP_009381565.1|3e-32PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Musa acuminata subsp. malacce

Alignment

This contig is upended


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JMFF024N13+ TAATGTGGTCCATCAGCCTTCCCGGTGTTGCCA
                      ____________________________________________________________
consensus TAATGTGGTCCATCAGCCTTCCCGGTGTTGCCA
 
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JMFF024N13+ CAAGTATGTCTACAGCACTCTGTAACTCCCAAGAAAAATCTTCGGGATCATAACACATGC
                      ____________________________________________________________
consensus CAAGTATGTCTACAGCACTCTGTAACTCCCAAGAAAAATCTTCGGGATCATAACACATGC
 
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JMFF024N13+ CTGACTCAAGCTTTGGTTTCTTTATAAGCTGTGAGATTTCATCAGCAATGGAAGATTGCC
                      ____________________________________________________________
consensus CTGACTCAAGCTTTGGTTTCTTTATAAGCTGTGAGATTTCATCAGCAATGGAAGATTGCC
 
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JMFF024N13+ CAACTGCCAACCCCACACGTAAATTTACTGCAGGTGCAAGAGTCTCAAAGACTTCCTTAA
                      ____________________________________________________________
consensus CAACTGCCAACCCCACACGTAAATTTACTGCAGGTGCAAGAGTCTCAAAGACTTCCTTAA
 
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JMFF024N13+ CCTGCAGGGCCAAGTCACGAGTCGGCAACACCACCAATGCTCGGAGACATTTTACAGTAC
JMSF030B05+ GCCAAGTCACGAGTCGGCAACACCACCAATGCTCGGAGACATTTTACAGTAC
                      ____________________________________________________________
consensus CCTGCAGGGCCAAGTCACGAGTCGGCAACACCACCAATGCTCGGAGACATTTTACAGTAC
 
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JMFF024N13+ GATTTGAAAGCATCTGCACAATTGGCAATGCATAGGAAAGAGTTTT-CCACTCCCAGTAG
JMSF030B05+ GATTTGAAAGCATCTGCACAATTGGCAATGCATAGGAAAGAGTTTTCCCACTCCCAGTAG
                      ____________________________________________________________
consensus GATTTGAAAGCATCTGCACAATTGGCAATGCATAGGAAAGAGTTTTCCCACTCCCAGTAG
 
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JMFF024N13+ GTGAATTTATACAAAGGTCTCGCTCAAAAGAGCCAGGTCCAATCGTCTCTTGCCAAACTG
JMSF030B05+ GTGAATTTATACAAAGGTCTCGCTCAAAAGAGCCAGGTCCAATCGTNTCTTGCCAAACTG
                      ____________________________________________________________
consensus GTGAATTTATACAAAGGTCTCGCTCAAAAGAGCCAGGTCCAATCGTCTCTTGCCAAACTG
 
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JMFF024N13+ AAACTTGTACTGGAAAGAGGGACGTAATCCCCATATTTTTCAAAGCTGCCTCCAACCT
JMSF030B05+ AAACTTGTACTGGAAAGAGGGANGTAATCCCCATATTTTTCAAAGNNGCCTCCAACCTCA
                      ____________________________________________________________
consensus AAACTTGTACTGGAAAGAGGGACGTAATCCCCATATTTTTCAAAGCTGCCTCCAACCTCA
 
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JMSF030B05+ GGTCAAGAAAAGGGAGANGGTTGAGAGGGCANTCATCAATGACAGAGANATCAANTGGGT
                      ____________________________________________________________
consensus GGTCAAGAAAAGGGAGANGGTTGAGAGGGCANTCATCAATGACAGAGANATCAANTGGGT
 
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JMSF030B05+ TTNTCATCCANGGCACCACTGGCACCCTATTNTTCTCACTTTTCTTCTTTTGCTCCGTNG
                      ____________________________________________________________
consensus TTNTCATCCANGGCACCACTGGCACCCTATTNTTCTCACTTTTCTTCTTTTGCTCCGTNG
 
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JMSF030B05+ CTTCCTCCATATCAACCACCAATTTCTCACTTCTCAGTGGGAGTNTTCAACAATCACGAA
                      ____________________________________________________________
consensus CTTCCTCCATATCAACCACCAATTTCTCACTTCTCAGTGGGAGTNTTCAACAATCACGAA
 
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JMSF030B05+ GCAACCACTTTCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAAAAATAT
                      ____________________________________________________________
consensus GCAACCACTTTCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAAAAATAT
 
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JMSF030B05+ TTCCACACACAGTGTATACGAATATGAACTTTGCGGAAGCAGCGGCGCGGGAGAGTCGGG
                      ____________________________________________________________
consensus TTCCACACACAGTGTATACGAATATGAACTTTGCGGAAGCAGCGGCGCGGGAGAGTCGGG
 
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JMSF030B05+ TCGGGCTGCCGTTATTTTGCTGCCAAATTGACGGATTTTAATTACACCATTCAATTTATC
                      ____________________________________________________________
consensus TCGGGCTGCCGTTATTTTGCTGCCAAATTGACGGATTTTAATTACACCATTCAATTTATC