Contig 012056:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024N13Sequence450012056 (2)ref|XP_006343610.1|4e-66PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like isoform X1 [Solanum tuber778007148 (2)gb|KDO51195.1|1e-48hypothetical protein CISIN_1g0096412mg, partial [Citrus sinensis]
JMSF030B05Sequence592012056 (2)ref|XP_004134588.1|4e-51PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis sativus] ref|XP_792007148 (2)ref|XP_009381565.1|3e-32PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Musa acuminata subsp. malacce

Alignment

This contig is upended


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JMFF024N13+                                      TAATGTGGTCCATCAGCCTTCCCGGTGTTGCCA
                      ____________________________________________________________
consensus                                        TAATGTGGTCCATCAGCCTTCCCGGTGTTGCCA
 
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JMFF024N13+           CAAGTATGTCTACAGCACTCTGTAACTCCCAAGAAAAATCTTCGGGATCATAACACATGC
                      ____________________________________________________________
consensus             CAAGTATGTCTACAGCACTCTGTAACTCCCAAGAAAAATCTTCGGGATCATAACACATGC
 
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JMFF024N13+           CTGACTCAAGCTTTGGTTTCTTTATAAGCTGTGAGATTTCATCAGCAATGGAAGATTGCC
                      ____________________________________________________________
consensus             CTGACTCAAGCTTTGGTTTCTTTATAAGCTGTGAGATTTCATCAGCAATGGAAGATTGCC
 
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JMFF024N13+           CAACTGCCAACCCCACACGTAAATTTACTGCAGGTGCAAGAGTCTCAAAGACTTCCTTAA
                      ____________________________________________________________
consensus             CAACTGCCAACCCCACACGTAAATTTACTGCAGGTGCAAGAGTCTCAAAGACTTCCTTAA
 
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JMFF024N13+           CCTGCAGGGCCAAGTCACGAGTCGGCAACACCACCAATGCTCGGAGACATTTTACAGTAC
JMSF030B05+                   GCCAAGTCACGAGTCGGCAACACCACCAATGCTCGGAGACATTTTACAGTAC
                      ____________________________________________________________
consensus             CCTGCAGGGCCAAGTCACGAGTCGGCAACACCACCAATGCTCGGAGACATTTTACAGTAC
 
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JMFF024N13+           GATTTGAAAGCATCTGCACAATTGGCAATGCATAGGAAAGAGTTTT-CCACTCCCAGTAG
JMSF030B05+           GATTTGAAAGCATCTGCACAATTGGCAATGCATAGGAAAGAGTTTTCCCACTCCCAGTAG
                      ____________________________________________________________
consensus             GATTTGAAAGCATCTGCACAATTGGCAATGCATAGGAAAGAGTTTTCCCACTCCCAGTAG
 
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JMFF024N13+           GTGAATTTATACAAAGGTCTCGCTCAAAAGAGCCAGGTCCAATCGTCTCTTGCCAAACTG
JMSF030B05+           GTGAATTTATACAAAGGTCTCGCTCAAAAGAGCCAGGTCCAATCGTNTCTTGCCAAACTG
                      ____________________________________________________________
consensus             GTGAATTTATACAAAGGTCTCGCTCAAAAGAGCCAGGTCCAATCGTCTCTTGCCAAACTG
 
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JMFF024N13+           AAACTTGTACTGGAAAGAGGGACGTAATCCCCATATTTTTCAAAGCTGCCTCCAACCT  
JMSF030B05+           AAACTTGTACTGGAAAGAGGGANGTAATCCCCATATTTTTCAAAGNNGCCTCCAACCTCA
                      ____________________________________________________________
consensus             AAACTTGTACTGGAAAGAGGGACGTAATCCCCATATTTTTCAAAGCTGCCTCCAACCTCA
 
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JMSF030B05+           GGTCAAGAAAAGGGAGANGGTTGAGAGGGCANTCATCAATGACAGAGANATCAANTGGGT
                      ____________________________________________________________
consensus             GGTCAAGAAAAGGGAGANGGTTGAGAGGGCANTCATCAATGACAGAGANATCAANTGGGT
 
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JMSF030B05+           TTNTCATCCANGGCACCACTGGCACCCTATTNTTCTCACTTTTCTTCTTTTGCTCCGTNG
                      ____________________________________________________________
consensus             TTNTCATCCANGGCACCACTGGCACCCTATTNTTCTCACTTTTCTTCTTTTGCTCCGTNG
 
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JMSF030B05+           CTTCCTCCATATCAACCACCAATTTCTCACTTCTCAGTGGGAGTNTTCAACAATCACGAA
                      ____________________________________________________________
consensus             CTTCCTCCATATCAACCACCAATTTCTCACTTCTCAGTGGGAGTNTTCAACAATCACGAA
 
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JMSF030B05+           GCAACCACTTTCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAAAAATAT
                      ____________________________________________________________
consensus             GCAACCACTTTCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAAAAATAT
 
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JMSF030B05+           TTCCACACACAGTGTATACGAATATGAACTTTGCGGAAGCAGCGGCGCGGGAGAGTCGGG
                      ____________________________________________________________
consensus             TTCCACACACAGTGTATACGAATATGAACTTTGCGGAAGCAGCGGCGCGGGAGAGTCGGG
 
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JMSF030B05+           TCGGGCTGCCGTTATTTTGCTGCCAAATTGACGGATTTTAATTACACCATTCAATTTATC
                      ____________________________________________________________
consensus             TCGGGCTGCCGTTATTTTGCTGCCAAATTGACGGATTTTAATTACACCATTCAATTTATC