Contig 012052:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028P13Sequence717012052 (2)gb|ABU94444.1|6e-52hydroxyproline-rich preprosystemin [Ipomoea batatas]617012052 (2)

Alignment

This contig is upended


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rJMSF028P13-              ATATTACACATTTAATAAGAAGATGTAACACCTTTTATTTAAGGTTTACATGCTCA
                      ____________________________________________________________
consensus                 ATATTACACATTTAATAAGAAGATGTAACACCTTTTATTTAAGGTTTACATGCTCA
 
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rJMSF028P13-          AACATAATATTAAATAATACTGAAACTATAATTTGTAAACAAACTACAACAATTATCTTA
                      ____________________________________________________________
consensus             AACATAATATTAAATAATACTGAAACTATAATTTGTAAACAAACTACAACAATTATCTTA
 
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rJMSF028P13-          TTCTAAACTGCTAATCTAATACTCAACACAAAAGCATATTATCATTGAGATCATAATACA
                      ____________________________________________________________
consensus             TTCTAAACTGCTAATCTAATACTCAACACAAAAGCATATTATCATTGAGATCATAATACA
 
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rJMSF028P13-          TGAGCTCAGGCTGATGACAGGAAATCACTTGAGTCGTCCGCCATTGAAATCACTTGTGCG
                      ____________________________________________________________
consensus             TGAGCTCAGGCTGATGACAGGAAATCACTTGAGTCGTCCGCCATTGAAATCACTTGTGCG
 
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rJMSF028P13-          CCGCCGCCGCTGTTTCCAGGGTGGATTGGCGGTCCTGGCTTTGGAGCCGGAGGCGGCGAT
                      ____________________________________________________________
consensus             CCGCCGCCGCTGTTTCCAGGGTGGATTGGCGGTCCTGGCTTTGGAGCCGGAGGCGGCGAT
 
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rJMSF028P13-          CTCGCCTGCCGTCCATAACTACTCGAGGTGGTAATTGTTGGGTGGTGGGGGGGTTCTGTT
                      ____________________________________________________________
consensus             CTCGCCTGCCGTCCATAACTACTCGAGGTGGTAATTGTTGGGTGGTGGGGGGGTTCTGTT
 
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rJMSF028P13-          TCCGGAGCCGGAGGCGGTGACTTCGGCAGCCGTCCATAATTCGAGGTGGTAATTGTTGGG
JMSF028P13+                     GAGGCGGTGACTTCGGCAGCCGTCCAT-ATTCGAGGTGGTAATTG-TGGG
                      ____________________________________________________________
consensus             TCCGGAGCCGGAGGCGGTGACTTCGGCAGCCGTCCATAATTCGAGGTGGTAATTGTTGGG
 
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rJMSF028P13-          TGGTGGGGGGGTTCTGTTTCCGGAGCCGGANGCGGTGACTTCNGCAGCCGTCCATAATTC
JMSF028P13+           TGGTGGGGGGGTTCTGTTTCCNGAGCCGGAGGCGGTGACTTCGGCAGCCGTCCATAATTC
                      ____________________________________________________________
consensus             TGGTGGGGGGGTTCTGTTTCCGGAGCCGGAGGCGGTGACTTCGGCAGCCGTCCATAATTC
 
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rJMSF028P13-          NAGGTGGTAATTGTTGGGTGTTCGGNGATATCTGTTTCCGGANCCNGANGCGGCNACTTT
JMSF028P13+           GAGGTGGTAATTGTTGGGTGTTCGGGGATATCTGTTTCCGGAGCCGGAGGCGGCGACTTT
                      ____________________________________________________________
consensus             GAGGTGGTAATTGTTGGGTGTTCGGGGATATCTGTTTCCGGAGCCGGAGGCGGCGACTTT
 
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rJMSF028P13-          TCCTCCCGNCCNAACTCTCC                                        
JMSF028P13+           TCCTCCCGTCCAAACTCTCCGCCCGAGCTTAGACCGTAGGGGATAATAGTTGGGTGGTGG
                      ____________________________________________________________
consensus             TCCTCCCGTCCAAACTCTCCGCCCGAGCTTAGACCGTAGGGGATAATAGTTGGGTGGTGG
 
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JMSF028P13+           GGGGGATCTATTTCCGGAGCCGGAGGCGGCGACTTTTGCCCCCGTCCAAACTCTCCGGCC
                      ____________________________________________________________
consensus             GGGGGATCTATTTCCGGAGCCGGAGGCGGCGACTTTTGCCCCCGTCCAAACTCTCCGGCC
 
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JMSF028P13+           GTGTTTAGATCGGAGGGGATAATAGTTGGGTGATTAGGACCAGACGGCTTCGGAGAAGGC
                      ____________________________________________________________
consensus             GTGTTTAGATCGGAGGGGATAATAGTTGGGTGATTAGGACCAGACGGCTTCGGAGAAGGC
 
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JMSF028P13+           GGCGGCGACTTTGGTTCTCTTCCGAAGTCTTTGGACCTTAAAGAACTCAACGTCAGCATG
                      ____________________________________________________________
consensus             GGCGGCGACTTTGGTTCTCTTCCGAAGTCTTTGGACCTTAAAGAACTCAACGTCAGCATG
 
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JMSF028P13+           TAGGCGTTTACGCCATTGAAACGCTCAAAGAAGCTTTGTGAATCCTGCGATGTTGGAAGC
                      ____________________________________________________________
consensus             TAGGCGTTTACGCCATTGAAACGCTCAAAGAAGCTTTGTGAATCCTGCGATGTTGGAAGC
 
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JMSF028P13+           TCCAAACGCAGCGTCAAGAGGAATTCACCGGTAGCAGCTGGAAGCTTTTCGTTATAAGAT
                      ____________________________________________________________
consensus             TCCAAACGCAGCGTCAAGAGGAATTCACCGGTAGCAGCTGGAAGCTTTTCGTTATAAGAT
 
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JMSF028P13+           AATGGCTGATAGCTGGATTTTGTCTTCTTCAGCTCATCCTCATAATTCTCTTGCAATCTT
                      ____________________________________________________________
consensus             AATGGCTGATAGCTGGATTTTGTCTTCTTCAGCTCATCCTCATAATTCTCTTGCAATCTT
 
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JMSF028P13+           CTTGCTTGAGCTAAAAAAGAAGAAACGAAGAAGAAGATGAGAAAGAAAGAAGTGAGTTTG
                      ____________________________________________________________
consensus             CTTGCTTGAGCTAAAAAAGAAGAAACGAAGAAGAAGATGAGAAAGAAAGAAGTGAGTTTG
 
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JMSF028P13+           GGAAGCTTCATAGCTATTAGCTAGTGCGTGTAGTGGTTTGTTTATTGTTATTTGTTGCTC
                      ____________________________________________________________
consensus             GGAAGCTTCATAGCTATTAGCTAGTGCGTGTAGTGGTTTGTTTATTGTTATTTGTTGCTC