| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006L09 | Sequence | 584 | 012045 (8) | ref|XP_009778066.1| | 1e-89 | PREDICTED: DNA-binding protein RHL1 isoform X5 [Nicotiana sylvestris] | 713 | 012045 (8) | gb|KJB26814.1| | 1e-43 | hypothetical protein B456_004G262200 [Gossypium raimondii] |
| JMFF016B15 | Sequence | 585 | 012045 (8) | ref|XP_009778066.1| | 1e-89 | PREDICTED: DNA-binding protein RHL1 isoform X5 [Nicotiana sylvestris] | 714 | 012045 (8) | gb|KJB26814.1| | 1e-43 | hypothetical protein B456_004G262200 [Gossypium raimondii] |
| JMFF021C04 | Sequence | 553 | 012045 (8) | ref|XP_009778066.1| | 4e-86 | PREDICTED: DNA-binding protein RHL1 isoform X5 [Nicotiana sylvestris] | 687 | 012045 (8) | gb|KJB26814.1| | 4e-41 | hypothetical protein B456_004G262200 [Gossypium raimondii] |
| JMSF027L05 | Sequence | 649 | 012045 (8) | ref|XP_002281960.1| | 3e-97 | PREDICTED: DNA-binding protein RHL1 [Vitis vinifera] ref|XP_010661929.1| PREDICT | 729 | 012045 (8) | emb|CDO98564.1| | 2e-09 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF027L05- GATTTGAATCAAAAAATATTCCTGAAAGTCAATCCTCTTTCTAAGCATGACAA
____________________________________________________________
consensus GATTTGAATCAAAAAATATTCCTGAAAGTCAATCCTCTTTCTAAGCATGACAA
. : . : . : . : . : . :
rJMSF027L05- CAATTTCTGTAACTTTTCCCTAATGTCTACAAAGCTTTTGAAAGACAATATTTGCACTAT
____________________________________________________________
consensus CAATTTCTGTAACTTTTCCCTAATGTCTACAAAGCTTTTGAAAGACAATATTTGCACTAT
. : . : . : . : . : . :
rJMSF027L05- TATCTATTCTCTGAGAAGCCAATAGCTAATTTGTAAACCGCAGTAATATAAACCAATGTT
____________________________________________________________
consensus TATCTATTCTCTGAGAAGCCAATAGCTAATTTGTAAACCGCAGTAATATAAACCAATGTT
. : . : . : . : . : . :
rJMSF027L05- TACCATATGATCATAGCAATGGCAGAAAAAATCTCAAGCAGTCCAATCTTCATCACTTCC
____________________________________________________________
consensus TACCATATGATCATAGCAATGGCAGAAAAAATCTCAAGCAGTCCAATCTTCATCACTTCC
. : . : . : . : . : . :
rJMSF027L05- ATCCATGTCCATATCCTGAGATGTACTGGAGAACTCTTCTATCTCTTCATCTTCAGCCTC
____________________________________________________________
consensus ATCCATGTCCATATCCTGAGATGTACTGGAGAACTCTTCTATCTCTTCATCTTCAGCCTC
. : . : . : . : . : . :
rJMSF027L05- AAGCTGCTTTTTTGTTGTTGTCATCCGTCTCCCAGCTTTAGTTTCTTCACCCACTTTCCC
____________________________________________________________
consensus AAGCTGCTTTTTTGTTGTTGTCATCCGTCTCCCAGCTTTAGTTTCTTCACCCACTTTCCC
. : . : . : . : . : . :
rJMSF027L05- CTTCTTCTTGGACGATGCAACATTCTTATGAACAATCTTCTGTTTTAGATCTGTAAGCTC
____________________________________________________________
consensus CTTCTTCTTGGACGATGCAACATTCTTATGAACAATCTTCTGTTTTAGATCTGTAAGCTC
. : . : . : . : . : . :
rJMSF027L05- CTTCTTCTCCTCCACTTTCTTAAACATAGTAGATATAGTTGCTTGAACAAGAGAACTGTG
____________________________________________________________
consensus CTTCTTCTCCTCCACTTTCTTAAACATAGTAGATATAGTTGCTTGAACAAGAGAACTGTG
. : . : . : . : . : . :
rJMSF027L05- ATTACTGTGAGGAAGCTCCTTGGATGTAGAGGCTACTTTGGCACCAGGTGTACTTTTCTC
____________________________________________________________
consensus ATTACTGTGAGGAAGCTCCTTGGATGTAGAGGCTACTTTGGCACCAGGTGTACTTTTCTC
. : . : . : . : . : . :
rJMSF027L05- AGCACATGGATCTAGAACAACTACATCCTTGTCAACATCAAAGACTGCAGCAGGCAATTT
____________________________________________________________
consensus AGCACATGGATCTAGAACAACTACATCCTTGTCAACATCAAAGACTGCAGCAGGCAATTT
. : . : . : . : . : . :
rJMSF027L05- TTCTTTCTTCTTAGAAGTAAAGTTCCTGTTTGAATGATTAACACCAACTTTCTGTTCCTC
rJMFF006L09- TTCTTAGAAGTAAAGTTCCTGTTTGAATGATTAACACCAACTTTCTGTTCCTC
rJMFF021C04- TTCTTAGAAGTAAAGTTCCTGTTTGAATGATTAACACCAACTTTCTGTTCCTC
rJMFF016B15- TTCTTAGAAGTAAAGTTCCTGTTTGAATGATTAACACCAACTTTCTGTTCCTC
____________________________________________________________
consensus TTCTTTCTTCTTAGAAGTAAAGTTCCTGTTTGAATGATTAACACCAACTTTCTGTTCCTC
. : . : . : . : . : . :
rJMSF027L05- TTCATCTGAAGTTTCAGCATCACTGACAACAAAATCTTCGCCAGAAGAAGCATTTGAATG
rJMFF006L09- TTCATCTGAAGTTTCAGCATCACTGACAACAAAATCTTCGCCAGAAGAAGCATTTGAATG
rJMFF021C04- TTCATCTGAAGTTTCAGCATCACTGACAACAAAATCTTCGCCAGAAGAAGCATTTGAATG
rJMFF016B15- TTCATCTGAAGTTTCAGCATCACTGACAACAAAATCTTCGCCAGAAGAAGCATTTGAATG
____________________________________________________________
consensus TTCATCTGAAGTTTCAGCATCACTGACAACAAAATCTTCGCCAGAAGAAGCATTTGAATG
. : . : . : . : . : . :
rJMSF027L05- TTTTTTTAGCTGTCCT
rJMFF006L09- TTTTTTTAGCTGTCCTCGCCGAATGCCGACTTGGAGTTATATCAAACAATTCTTTGACAT
rJMFF021C04- TTTTTTTAGCTGTCCTCGCCGAATGCCGACTTGGAGTTATATCAAACAATTCTTTGACAT
rJMFF016B15- TTTTTTTAGCTGTCCTCGCCGAATGCCGACTTGGAGTTATATCAAACAATTCTTTGACAT
____________________________________________________________
consensus TTTTTTTAGCTGTCCTCGCCGAATGCCGACTTGGAGTTATATCAAACAATTCTTTGACAT
. : . : . : . : . : . :
rJMFF006L09- CACTTTGATCTTCTGTAGAATCATCTTCTTGTTCATGTTTAGGAGATTCTTGTTCTGCAA
rJMFF021C04- CACTTTGATCTTCTGTAGAATCATCTTCTTGTTCATGTTTAGGAGATTCTTGTTCTGCAA
rJMFF016B15- CACTTTGATCTTCTGTAGAATCATCTTCTTGTTCATGTTTAGGAGATTCTTGTTCTGCAA
____________________________________________________________
consensus CACTTTGATCTTCTGTAGAATCATCTTCTTGTTCATGTTTAGGAGATTCTTGTTCTGCAA
. : . : . : . : . : . :
rJMFF006L09- TATTTATCCCTGTTCTGTTAATCCCCTCTTTTCCATTACATGCTGCACCA--ACCACCCT
rJMFF021C04- TATTTATCCCTGTTCTGTTAATCCCCTCTTTTCCATTACATGCTGCACCA--ACCACCCT
rJMFF016B15- TATTTATCCCTGTTCTGTTAATCCCCTCTTTTCCATTACATGCTGCACCA--ACCACCCT
JMSF027L05+ GTTCTGTTAATCCCCTCTTTTCCATTACATGCTGCACCAGCACCACCCT
____________________________________________________________
consensus TATTTATCCCTGTTCTGTTAATCCCCTCTTTTCCATTACATGCTGCACCA--ACCACCCT
. : . : . : . : . : . :
rJMFF006L09- TGAAATCATATTCCGCATT------CACATTCAACTCCTTGGGGAACTCAAGACGCACTT
rJMFF021C04- TGAAATCATATTCCGCATT------CACATTCAACTCCTTGGGGAACTCAAGACGCACTT
rJMFF016B15- TGAAATCATATTCCGCATT------CACATTCAACTCCTTGGGGAACTCAAGACGCACTT
JMFF021C04+ GGGGAACTCAAGACGCACTT
JMFF006L09+ AATCATATTCCGCATT------CACATTCAACTCCTTGGGGAACTCAAGACGCACTT
JMFF016B15+ AAATCATATTCCGCATT------CACATTCAACTCCTTGGGGAACTCAAGACGCACTT
JMSF027L05+ TGAAATCATATTCCGCATTCTGGTGCACATTCAACTCCTTGGGGAACTCAAGACGCACTT
____________________________________________________________
consensus TGAAATCATATTCCGCATT------CACATTCAACTCCTTGGGGAACTCAAGACGCACTT
. : . : . : . : . : . :
rJMFF006L09- CATTTGGATTCTCATCTTTCCTCCCTATCCACCATGCATCAGAAAACACAATCATGTTGT
rJMFF021C04- CATTTGGATTCTCATCTTTCCTCCCTATCCACCATGCATCAGAAAACACAATCATGTTGT
rJMFF016B15- CATTTGGATTCTCATCTTTCCTCCCTATCCACCATGCATCAGAAAACACAATCATGTTGT
JMFF021C04+ CATTTGGATTCTCATCTTTCCTCCCTATCCACCATGCATCAGAAAACACAATCATGTTGT
JMFF006L09+ CATTTGGATTCTCATCTTTCCTCCCTATCCACCATGCATCAGAAAACACAATCATGTTGT
JMFF016B15+ CATTTGGATTCTCATCTTTCCTCCCTATCCACCATGCATCAGAAAACACAATCATGTTGT
JMSF027L05+ CATTTGGATTCTCATCTTTCCTCCCTATCCACCATGCATCAGAAAACACAATCATGTTGT
____________________________________________________________
consensus CATTTGGATTCTCATCTTTCCTCCCTATCCACCATGCATCAGAAAACACAATCATGTTGT
. : . : . : . : . : . :
rJMFF006L09- CAAAGTAATCATCACACACTACATTCTTCCCGCCTCTGGAGAACTGCAGACTCAAATATC
rJMFF021C04- CAAAGTAATCATCACACACTACATTCTTCCCGCCTCTGGAGAACTGCAGACTCAAATATC
rJMFF016B15- CAAAGTAATCATCACACACTACATTCTTCCCGCCTCTGGAGAACTGCAGACTCAAATATC
JMFF021C04+ CAAAGTAATCATCACACACTACATTCTTCCCGCCTCTGGAGAACTGCAGACTCAAATATC
JMFF006L09+ CAAAGTAATCATCACACACTACATTCTTCCCGCCTCTGGAGAACTGCAGACTCAAATATC
JMFF016B15+ CAAAGTAATCATCACACACTACATTCTTCCCGCCTCTGGAGAACTGCAGACTCAAATATC
JMSF027L05+ CAAAGTAATCATCACACACTACATTCTTCCCGCCTCTGGAGAACTGCAGACTCAAATATC
____________________________________________________________
consensus CAAAGTAATCATCACACACTACATTCTTCCCGCCTCTGGAGAACTGCAGACTCAAATATC
. : . : . : . : . : . :
rJMFF006L09- TGTTTTTTGGATAAACAATTGTCCCAAATAACTTCATTTGGCCCTGAGGGAAATCGAG
rJMFF021C04- TGTTTTTTGGATAAACAATTGTCCCAAATAACTTCATTTGGCCCTG
rJMFF016B15- TGTTTTTTGGATAAACAATTGTCCCAAATAACTTCATTTGGCCCTGAGGGAAATCGAG
JMFF021C04+ TGTTTTTTGGATAAACAATTGTCCCAAATAACTTCATTTGGCCCTGAGGGAAATCGAGGT
JMFF006L09+ TGTTTTTTGGATAAACAATTGTCCCAAATAACTTCATTTGGCCCTGAGGGAAATCGAGGT
JMFF016B15+ TGTTTTTTGGATAAACAATTGTCCCAAATAACTTCATTTGGCCCTGAGGGAAATCGAGGT
JMSF027L05+ TGTTTTTTGGATAAACAATTGTCCCAAATAACTTCATTTGGCCCTGAGGGAAATCGAGGT
____________________________________________________________
consensus TGTTTTTTGGATAAACAATTGTCCCAAATAACTTCATTTGGCCCTGAGGGAAATCGAGGT
. : . : . : . : . : . :
JMFF021C04+ ACAGAATAGGGTTTTTGCTACCAAGATCTTTGAGCTCGCCGATTTTGCCACCAGAAACGG
JMFF006L09+ ACAGAATAGGGTTTTTGCTACCAAGATCTTTGAGCTCGCCGATTTTGCCACCAGAAACGG
JMFF016B15+ ACAGAATAGGGTTTTTGCTACCAAGATCTTTGAGCTCGCCGATTTTGCCACCAGAAACGG
JMSF027L05+ ACAGAATAGGGTTTTTGCTACCAAGATCTTTGAGCTCGCCGATTTTGCCACCAGAAACGG
____________________________________________________________
consensus ACAGAATAGGGTTTTTGCTACCAAGATCTTTGAGCTCGCCGATTTTGCCACCAGAAACGG
. : . : . : . : . : . :
JMFF021C04+ GGGCGAGAAGCCCGGGGAACGAGAAGAGGAAACGGCTCTTGCTGCGCTGAGACTTGCGAA
JMFF006L09+ GGGCGAGAAGCCCGGGGAACGAGAAGAGGAAACGGCTCTTGCTGCGCTGAGACTTGCGAA
JMFF016B15+ GGGCGAGAAGCCCGGGGAACGAGAAGAGGAAACGGCTCTTGCTGCGCTGAGACTTGCGAA
JMSF027L05+ GGGCGAGAAGCCCGGGGAACGAGAAGAGGAAACGGCTCTTGCTGCGCTGAGACTTGCGAA
____________________________________________________________
consensus GGGCGAGAAGCCCGGGGAACGAGAAGAGGAAACGGCTCTTGCTGCGCTGAGACTTGCGAA
. : . : . : . : . : . :
JMFF021C04+ TTAGGTCTTTGCCGTGATGTTTGATCACTGTCTTGGATGGTTGCAGAGCATTCCCAGCCG
JMFF006L09+ TTAGGTCTTTGCCGTGATGTTTGATCACTGTCTTGGATGGTTGCAGAGCATTCCCAGCCG
JMFF016B15+ TTAGGTCTTTGCCGTGATGTTTGATCACTGTCTTGGATGGTTGCAGAGCATTCCCAGCCG
JMSF027L05+ TTAGGTCTTTGCCGTGATGTTTGATCACTGTCTTGGATGGTTGCAGAGCATTCCCAGCCG
____________________________________________________________
consensus TTAGGTCTTTGCCGTGATGTTTGATCACTGTCTTGGATGGTTGCAGAGCATTCCCAGCCG
. : . : . : . : . : . :
JMFF021C04+ CTGTCGCCGCCTTCACAGGTGTCTCTGAAAGCATCCTCTTCGAGAATGCAAGTTTCTTCA
JMFF006L09+ CTGTCGCCGCCTTCACAGGTGTCTCTGAAAGCATCCTCTTCGAGAATGCAAGTTTCTTCA
JMFF016B15+ CTGTCGCCGCCTTCACAGGTGTCTCTGAAAGCATCCTCTTCGAGAATGCAAGTTTCTTCA
JMSF027L05+ CTGTCGCCGCCTTCACAGGTGTCTCTGAAAGCATCCTCTTCGAGAATGCAAGTTTCTTCA
____________________________________________________________
consensus CTGTCGCCGCCTTCACAGGTGTCTCTGAAAGCATCCTCTTCGAGAATGCAAGTTTCTTCA
. : . : . : . : . : . :
JMFF021C04+ GCCTCCTCCGCTCCTCCACCTCCGGGTTTTCCGGTGGAGGAGCGTTCTCTTCCTTCTTCC
JMFF006L09+ GCCTCCTCCGCTCCTCCACCTCCGGGTTTTCCGGTGGAGGAGCGTTCTCTTCCTTCTTCC
JMFF016B15+ GCCTCCTCCGCTCCTCCACCTCCGGGTTTTCCGGTGGAGGAGCGTTCTCTTCCTTCTTCC
JMSF027L05+ GCCTCCTCCGCTCCTCCACCTCCGGGTTTTCCGGTGGAGGAGCGTTCTCTTCCTTCTTCC
____________________________________________________________
consensus GCCTCCTCCGCTCCTCCACCTCCGGGTTTTCCGGTGGAGGAGCGTTCTCTTCCTTCTTCC
. : . : . : . : . : . :
JMFF021C04+ CGCCGTGCCGTACCATCTCTCAGTCAGCTTGCACAACAGTAAAGGCGGGAACC
JMFF006L09+ CGCCGTGCCGTACCATCTCTCAGTCAGCTTGCACAACAGTAAAGGCGGGAACC
JMFF016B15+ CGCCGTGCCGTACCATCTCTCAGTCAGCTTGCACAACAGTAAAGGCGGGAACC
JMSF027L05+ CGCCGTGCCGTACCATCTCTCAGTCAGCTTGCACAACAGTAAAGGCGGGAACCAACTCTC
____________________________________________________________
consensus CGCCGTGCCGTACCATCTCTCAGTCAGCTTGCACAACAGTAAAGGCGGGAACCAACTCTC