Contig 012043:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027I07Sequence684012043 (2)ref|XP_009794100.1|237PREDICTED: uncharacterized protein LOC104240898 [Nicotiana sylvestris] ref|XP_00771012646 (3)
JMSF030G23Sequence554012043 (2)ref|XP_009794100.1|155PREDICTED: uncharacterized protein LOC104240898 [Nicotiana sylvestris] ref|XP_00695011347 (3)gb|KJB13573.1|1e-53hypothetical protein B456_002G082100 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF027I07+ TCACCACGGGCTTTGGGTACAAAC
                      ____________________________________________________________
consensus TCACCACGGGCTTTGGGTACAAAC
 
. : . : . : . : . : . :
JMSF027I07+ TGTCAGTGATATTCTTCATAGCTTCAAGCTGTGAAACCTCCGGCCCCAAAAACACAACCA
                      ____________________________________________________________
consensus TGTCAGTGATATTCTTCATAGCTTCAAGCTGTGAAACCTCCGGCCCCAAAAACACAACCA
 
. : . : . : . : . : . :
JMSF030G23+ GTCGTCCCCGTTAGTTACCGACAAAACGTCTA
JMSF027I07+ CATCGGAAGAATTCAAAACCCTGCTATTGTCGTCCCCGTTAGTTACCGACAAAACGTCTA
                      ____________________________________________________________
consensus CATCGGAAGAATTCAAAACCCTGCTATTGTCGTCCCCGTTAGTTACCGACAAAACGTCTA
 
. : . : . : . : . : . :
JMSF030G23+ GGTTTTCAACTATGGTGCTCGAAGAACGAGTTTCGAAGGCTTTAGTCTTATCCGGCCACA
JMSF027I07+ GGTTTTCAACTATGGTGCTCGAAGAACGAGTTTCGAAGGCTTTAGTCTTATCCGGCCACA
                      ____________________________________________________________
consensus GGTTTTCAACTATGGTGCTCGAAGAACGAGTTTCGAAGGCTTTAGTCTTATCCGGCCACA
 
. : . : . : . : . : . :
JMSF030G23+ GAATCAGAATCTTGATTTTAGACCCTTTCCTTTTGATGGGCATGTCTGCAAAGACATCAA
JMSF027I07+ GAATCAGAATCTTGATTTTAGACCCTTTCCTTTTGATGGGCATGTCTGCAAAGACATCAA
                      ____________________________________________________________
consensus GAATCAGAATCTTGATTTTAGACCCTTTCCTTTTGATGGGCATGTCTGCAAAGACATCAA
 
. : . : . : . : . : . :
JMSF030G23+ CCGCGAGCTGAGAGAGTGAAGAGGGCGAGTCATCGATCACCGGAATCTCGACCCGGAATC
JMSF027I07+ CCGCGAGCTGAGAGAGTGAAGAGGGCGAGTCATCGATCACCGGAATCTCGACCCGGAATC
                      ____________________________________________________________
consensus CCGCGAGCTGAGAGAGTGAAGAGGGCGAGTCATCGATCACCGGAATCTCGACCCGGAATC
 
. : . : . : . : . : . :
JMSF030G23+ TGGGTTGCTTTAGCTTCTTGAGCCGGCCGGCGAGTTTGGCATTGTTGAGGGGCTTCTCTA
JMSF027I07+ TGGGTTGCTTTAGCTTCTTGAGCCGGCCGGCGAGTTTGGCATTGTTGAGGGGCTTCTCTA
                      ____________________________________________________________
consensus TGGGTTGCTTTAGCTTCTTGAGCCGGCCGGCGAGTTTGGCATTGTTGAGGGGCTTCTCTA
 
. : . : . : . : . : . :
JMSF030G23+ AACTGGTGGAAAGAGAGGTCTTTGCCTGGGAAATAGCTTCTTCCTTGGTGGTAGGTGGGG
JMSF027I07+ AACTGGTGGAAAGAGAGGTCTTTGCCTGGGAAATAGCTTCTTCCTTGGTGGTAGGTGGGG
                      ____________________________________________________________
consensus AACTGGTGGAAAGAGAGGTCTTTGCCTGGGAAATAGCTTCTTCCTTGGTGGTAGGTGGGG
 
. : . : . : . : . : . :
JMSF030G23+ -GGGGGAGGAGAGAGCACACTGGGGGAATCTTGATTTGGTTAAGGAAATAGAAAGGTGAT
JMSF027I07+ TGGGGGAGGAGAGAGCACACTGGGGGAATCTTGATTTGGTTAAGGAAATAGAAAGGTGAT
                      ____________________________________________________________
consensus TGGGGGAGGAGAGAGCACACTGGGGGAATCTTGATTTGGTTAAGGAAATAGAAAGGTGAT
 
. : . : . : . : . : . :
JMSF030G23+ CACAGTGAAGAAGATGATGATGATGGCGTGGAGGGGAGAAGAAAGATGGATACTGAATTT
JMSF027I07+ CACAGTGAAGAAGATGATGATGATGGCGTGGAGGGGAGAAGAAAGATGGATACTGAATTT
                      ____________________________________________________________
consensus CACAGTGAAGAAGATGATGATGATGGCGTGGAGGGGAGAAGAAAGATGGATACTGAATTT
 
. : . : . : . : . : . :
JMSF030G23+ GTGTCAGCTTGAAATGGAAATTGGGGTTTGAAGTTCTGATGAATTGAGAGTGGAATTTTA
JMSF027I07+ GTGTCAGCTTGAAATGGAAATTGGGGTTTGAAGTTCTGATGAATTGAGAGTGGAATTTTA
                      ____________________________________________________________
consensus GTGTCAGCTTGAAATGGAAATTGGGGTTTGAAGTTCTGATGAATTGAGAGTGGAATTTTA
 
. : . : . : . : . : . :
JMSF030G23+ CAAGATTGGAAGCCATTTTAGTATGCAGAGTTTCTGCAAATC
JMSF027I07+ CAAGATTGGAAGCCATTTTAGTATGCAGAGTTCCTGCAAATCAAGAACGTTTAGTGCCCC
                      ____________________________________________________________
consensus CAAGATTGGAAGCCATTTTAGTATGCAGAGTTTCTGCAAATCAAGAACGTTTAGTGCCCC