Contig 012040:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027D08Sequence645012040 (3)740008550 (3)ref|XP_009618339.1|3e-62PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Nicotiana to
JMSF031D10Sequence697012040 (3)ref|XP_009618339.1|2e-18PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Nicotiana to779008550 (3)ref|XP_004249424.1|8e-52PREDICTED: calcium homeostasis endoplasmic reticulum protein [Solanum lycopersi
JMSF048M22Sequence676012040 (3)ref|XP_009618339.1|1e-11PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Nicotiana to701008550 (3)ref|XP_009618339.1|2e-61PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Nicotiana to

Alignment

This contig is upended


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JMSF031D10+                 AGCNGTAGTAATAATGGCCTTCACCACCAAATAGGAAGCTATAACCTGGATTGT
JMSF048M22+                                               ATAGGAAGCTATAACCTGGATTGT
                      ____________________________________________________________
consensus                   AGCNGTAGTAATAATGGCCTTCACCACCAAATAGGAAGCTATAACCTGGATTGT
 
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JMSF031D10+           CTTGCTGTTTTTCACGGATCATGGCTTCAAACTCGGGACCATTCTTGACAGCATACTCAA
JMSF048M22+           CTTGCTGTTTTTCACGGATCATGGCTTCAAACTCGGGACCATTCTTGACAGCATACTCAA
JMSF027D08+                          GGATCATGGCTTCAAACTCGGGACCATTCTTGACAGCATACTCAA
                      ____________________________________________________________
consensus             CTTGCTGTTTTTCACGGATCATGGCTTCAAACTCGGGACCATTCTTGACAGCATACTCAA
 
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JMSF031D10+           TCACTTTATCGATGCGCTTTACAAGTTCGGGATCAGAAGGTGGAGGAGCAGGAGGTGGTG
JMSF048M22+           TCACTTTATCGATGCGCTTTACAAGTTCGGGATCAGAAGGTGGAGGAGCAGGAGGTGGTG
JMSF027D08+           TCACTTTATCGATGCGCTTTACAAGTTCGGGATCAGAAGGTGGAGGAGCAGGAGGTGGTG
                      ____________________________________________________________
consensus             TCACTTTATCGATGCGCTTTACAAGTTCGGGATCAGAAGGTGGAGGAGCAGGAGGTGGTG
 
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JMSF031D10+           GAGAATCATAAGGGCCCTGAAAGGGTGATGGAGCAAGGTGAGGAGGCATGTGTGGCGGAA
JMSF048M22+           GAGAATCATAAGGGCCCTGAAAGGGTGATGGAGCAAGGTGAGGAGGCATGTGTGGCGGAA
JMSF027D08+           GAGAATCATAAGGGCCCTGAAAGGGTGATGGAGCAAGGTGAGGAGGCATGTGTGGCGGAA
                      ____________________________________________________________
consensus             GAGAATCATAAGGGCCCTGAAAGGGTGATGGAGCAAGGTGAGGAGGCATGTGTGGCGGAA
 
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JMSF031D10+           AAGCTGGGGGAGGATGATGCTGCTGTTGCTGTAGGTGAAGCAGGTGAGGAGGAGGTGGAG
JMSF048M22+           AAGCTGGGGGAGGATGCTGCTGCTGTTGCTGTAGGTGAAGCAGGTGAGGAGGAGGTGGAG
JMSF027D08+           AAGCTGGGGGAGGATGCTGCTGCTGTTGCTGTAGGTGAAGCAGGTGAGGAGGAGGTGGAG
                      ____________________________________________________________
consensus             AAGCTGGGGGAGGATGCTGCTGCTGTTGCTGTAGGTGAAGCAGGTGAGGAGGAGGTGGAG
 
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JMSF031D10+           CATGAGGATGAATCTGTGATGGGCGAGGGTAAGGGAACTGTTGAAGAGAAGATTGTGGAG
JMSF048M22+           CATGAGGATGAATCTGTGATGGGCGAGGGTAAGGGAACTGTTGAAGAGAAGATTGTGGAG
JMSF027D08+           CATGAGGATGAATCTGTGATGGGCGAGGGTAAGGGAACTGTTGAAGAGAAGATTGTGGAG
                      ____________________________________________________________
consensus             CATGAGGATGAATCTGTGATGGGCGAGGGTAAGGGAACTGTTGAAGAGAAGATTGTGGAG
 
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JMSF031D10+           GTAAAAATGGAGGGCCATGACCTGATGGAGGAAATTGTTGATGCTGTGGGTGAAAACCAA
JMSF048M22+           GTAAAAATGGAGGGCCATGACCTGATGGAGGAAATTGTTGATGCTGTGGGTGAAAACCAA
JMSF027D08+           GTAAAAATGGAGGGCCATGACCTGATGGAGGAAATTGTTGATGCTGTGGGTGAAAACCAA
                      ____________________________________________________________
consensus             GTAAAAATGGAGGGCCATGACCTGATGGAGGAAATTGTTGATGCTGTGGGTGAAAACCAA
 
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JMSF031D10+           ACTGTTGCTGCTGTTGCATATTAGCCGCTTGGTACTGTTGTTGGGCAAATGCCATAGCAG
JMSF048M22+           ACTGTTGCTGCTGTTGCATATTAGCCGCTTGGTGCTGTTGTTGGGCAAATGCCATAGCAG
JMSF027D08+           ACTGTTGCTGCTGTTGCATATTAGCCGCTTGGTGCTGTTGTTGGGCAAATGCCATAGCAG
                      ____________________________________________________________
consensus             ACTGTTGCTGCTGTTGCATATTAGCCGCTTGGTGCTGTTGTTGGGCAAATGCCATAGCAG
 
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JMSF031D10+           CTGCATAATCATGGGGAGGTCGATCCATCGGCTCTCAGAAAAAATAATAGCACATCTACA
JMSF048M22+           CTGCATAATCATGGGGAGGTCGATCCATCGGCTCTCAGAAAAAATAATAGCACATCTACA
JMSF027D08+           CTGCATAATCATGGGGAGGTCGATCCATCGGCTCTCAGAAAAAATAATAGCACATCTACA
                      ____________________________________________________________
consensus             CTGCATAATCATGGGGAGGTCGATCCATCGGCTCTCAGAAAAAATAATAGCACATCTACA
 
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JMSF031D10+           AAAATAAGCTACGCAAGCCCTCCAACACCTTTGCTAGTACGGGGTTGAAGGCTCGCTGCT
JMSF048M22+           AAAATAAGCTACGCAAGCCCTCCAACACCTTTGCTAGTACGGGGTTGAAGGCTCGCTGCT
JMSF027D08+           AAAATAAGCTACGCAAGCCCTCCAACACCTTTGCTAGTACGGGGTTGAAGGCTCGCTGCT
                      ____________________________________________________________
consensus             AAAATAAGCTACGCAAGCCCTCCAACACCTTTGCTAGTACGGGGTTGAAGGCTCGCTGCT
 
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JMSF031D10+           CCCAGAGGGAAGAACGGCAAAGGACTGCAGTGACGGAGCTCAGAGGTGGCGATGAACGGC
JMSF048M22+           CCCAGAGGGAAGAACGGCAAAGGACTGCAGTGACGGAGCTCAGAGGTGGCGATGAACGGC
JMSF027D08+           CCCAGAGGGAAGAACGGCAAAGGACTGCAGTGACGGAGCTCAGAGGTGGCGATGAACGGC
                      ____________________________________________________________
consensus             CCCAGAGGGAAGAACGGCAAAGGACTGCAGTGACGGAGCTCAGAGGTGGCGATGAACGGC
 
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JMSF031D10+           GGAGGTACCGCCTCTCCGGCGGTGGCTGATTCGATTGTTCCT                  
JMSF048M22+           GGAGGTACCGCCTCTCCGGCGGTGGCTGATTCGATTGTTCCTAATTAGAT          
JMSF027D08+           GGAGGTACCGCCTCTCCGGCGGTGGCTGATTCGATTGTTCCTAATTAGATTGGGGTTTCC
                      ____________________________________________________________
consensus             GGAGGTACCGCCTCTCCGGCGGTGGCTGATTCGATTGTTCCTAATTAGATTGGGGTTTCC