Contig 012037:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF026L17-             AAGTTTTTATATCCAAAACTTTGGATAAATATGATAGATGCTTGGGATAAGAACTGA
rJMSF027L17-              AGTTTTTATATCCAAAACTTTGGATAAATATGATAGATGCTTGGGATAAGAACTGA
                      ____________________________________________________________
consensus                AAGTTTTTATATCCAAAACTTTGGATAAATATGATAGATGCTTGGGATAAGAACTGA
 
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rJMSF026L17-          ACATTGAATTCAGAATGAAGATTGTCACTACTTCCTTGTTGTTTTATAGTCACTTTTTGG
rJMSF027L17-          ACATTGAATTCAGAATGAAGATTGTCACTACTTCCTTGTTGTTTTATAGTCACTTTTTGG
                      ____________________________________________________________
consensus             ACATTGAATTCAGAATGAAGATTGTCACTACTTCCTTGTTGTTTTATAGTCACTTTTTGG
 
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rJMSF026L17-          GTTTATCGCCATACAGGGAAGCAAGGAACTGCTTGAGAAACCTGTTGTAGACGCAAGGCC
rJMSF027L17-          GTTTATCGCCATACAGGGAAGCAAGGAACTGCTTGAGAAACCTGTTGTAGACGCAAGGCC
                      ____________________________________________________________
consensus             GTTTATCGCCATACAGGGAAGCAAGGAACTGCTTGAGAAACCTGTTGTAGACGCAAGGCC
 
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rJMSF026L17-          GCTCTAGGTGAACCAGGTGACCCGCTTTCTTTATGCCTTGAAACGTCGTCTTGCTTCCTA
rJMSF027L17-          GCTCTAGGTGAACCAGGTGACCCGCTTTCTTTATGCCTTGAAACGTCGTCTTGCTTCCTA
                      ____________________________________________________________
consensus             GCTCTAGGTGAACCAGGTGACCCGCTTTCTTTATGCCTTGAAACGTCGTCTTGCTTCCTA
 
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rJMSF026L17-          GTTTCTCTTTCATTTCTTGTGCTAGCTCCAACTTGAAAATCTGATCATTCTCACCCCACA
rJMSF027L17-          GTTTCTCTTTCATTTCTTGTGCTAGCTCCAACTTGAAAATCTGATCATTCTCACCCCACA
                      ____________________________________________________________
consensus             GTTTCTCTTTCATTTCTTGTGCTAGCTCCAACTTGAAAATCTGATCATTCTCACCCCACA
 
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rJMSF026L17-          GAAGGTGTATTCTCTGGGGAAAAGCTGGGATAGTAATATCTTTGCTAACTACCATGCCTT
rJMSF027L17-          GAAGGTGTATTCTCTGGGGAAAAGCTGGGATAGTAATATCTTTGCTAACTACCATGCCTT
                      ____________________________________________________________
consensus             GAAGGTGTATTCTCTGGGGAAAAGCTGGGATAGTAATATCTTTGCTAACTACCATGCCTT
 
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rJMSF026L17-          CTAGCAGTTCACTCCTTTCCTTCCTGTTGCCATACATCACCTCAAGGAAATCCTTGTAAA
rJMSF027L17-          CTAGCAGTTCACTCCTTTCCTTCCTGTTGCCATACATCACCTCAAGGAAATCCTTGTAAA
                      ____________________________________________________________
consensus             CTAGCAGTTCACTCCTTTCCTTCCTGTTGCCATACATCACCTCAAGGAAATCCTTGTAAA
 
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rJMSF026L17-          AGCGATTAGGGATCCTGAGTTTTCTATAAGTAGCAACCTTAAATAGAGCCTTGAGACCTT
rJMSF027L17-          AGCGATTAGGGATCCTGAGTTTTCTATAAGTAGCAACCTTAAATAGAGCCTTGAGACCTT
                      ____________________________________________________________
consensus             AGCGATTAGGGATCCTGAGTTTTCTATAAGTAGCAACCTTAAATAGAGCCTTGAGACCTT
 
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rJMSF026L17-          TGACAGAGGTAGGCAATAGCATGTCCGAGGAAGTAGAGAATCCTAGGCTATTAACCATGT
rJMSF027L17-          TGACAGAGGTAGGCAATAGCATGTCCGAGGAAGTAGAGAATCCTAGGCTATTAACCATGT
JMFS139B09+                  GGTAGGCAATAGCATGTCCGAGGAAGTAGAGAATCCTAGGCTATTAACCATGT
JMSF026L17+                                                          CTATTAACCATGT
                      ____________________________________________________________
consensus             TGACAGAGGTAGGCAATAGCATGTCCGAGGAAGTAGAGAATCCTAGGCTATTAACCATGT
 
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rJMSF026L17-          GGGTGATGATATCGTCGGTGGTAGCCATTATTGCGCCGGAGACTACCAGGGCCTCCACCA
rJMSF027L17-          GGGTGATGATATCGTCGGTGGTAGCCATTATTGCGCCGGAGACTACCAGGGCCTCCACCA
JMFS139B09+           GGGTGATGATATCGTCGGTGGTAGCCATTATTGCGCCGGAGACTACCAGGGCCTCCACCA
JMSF026L17+           GGGTGATGATATCGTCGGTGGTAGCCATTATTGCGCCGGAGACTACCAGGGCCTCCACCA
                      ____________________________________________________________
consensus             GGGTGATGATATCGTCGGTGGTAGCCATTATTGCGCCGGAGACTACCAGGGCCTCCACCA
 
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rJMSF026L17-          GCTCCGGGAAGAGCTCCGCCATCTTGAACGCCACCATGCCGCCGTAGCTAAACCCAACCA
rJMSF027L17-          GCTCCGGGAAGAGCTCCGCCATCTTGAACGCCACCATGCCGCCGTAGCTAAACCCAACCA
JMFS139B09+           GCTCCGGGAAGAGCTCCGCCATCTTGAACGCCACCATGCCGCCGTAGCTAAACCCAACCA
JMSF026L17+           GCTCCGGGAAGAGCTCCGCCATCTTGAACGCCACCATGCCGCCGTAGCTAAACCCAACCA
                      ____________________________________________________________
consensus             GCTCCGGGAAGAGCTCCGCCATCTTGAACGCCACCATGCCGCCGTAGCTAAACCCAACCA
 
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rJMSF026L17-          CCGTGCATTTCTCCACCCCGAGCTTCCTCAGCCCCTTGGCCAAACACTCGGCCTGAAA  
rJMSF027L17-          CCGTGCATTTCTCCACCCCGAGCTTCCTCAGCCCCTTGGCCAAACACTCGGCCTGAAATG
JMFS139B09+           CCGTGCATTTCTCCACCCCGAGCTTCCTCAGCCCCTTGGCCAAACACTCGGCCTGAAATG
JMSF026L17+           CCGTGCATTTCTCCACCCCGAGCTTCCTCAGCCCCTTGGCCAAACACTCGGCCTGAAATG
                      ____________________________________________________________
consensus             CCGTGCATTTCTCCACCCCGAGCTTCCTCAGCCCCTTGGCCAAACACTCGGCCTGAAATG
 
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rJMSF027L17-          CCGGCGACCGGTCGGCGCTGT                                       
JMFS139B09+           CAGGCGACCGGTCGGCGCTGTCCGTGACGGAGCCGCCGAAGAAGAGGAGGTCAGGCACGT
JMSF026L17+           CCGGCGACCGGTCGGCGCTGTCCGTGACGGAGCCGCCGAAGAAGAGGAGGTCAGGCACGT
                      ____________________________________________________________
consensus             CCGGCGACCGGTCGGCGCTGTCCGTGACGGAGCCGCCGAAGAAGAGGAGGTCAGGCACGT
 
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JMFS139B09+           AGATAGCATACTTCTTCAGCCACCCAACCTGGAACTGCCACGTCAGAATCCCTTCTCCGG
JMSF026L17+           AGATAGCATACTTCTTCAGCCACCCAACCTGGAACTGCCACGTCAGAATCCCTTCTCCGG
                      ____________________________________________________________
consensus             AGATAGCATACTTCTTCAGCCACCCAACCTGGAACTGCCACGTCAGAATCCCTTCTCCGG
 
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JMFS139B09+           CGAAGCCGTGCAGGAGCACCACCACGGGTTTGGATGGTTTGGCGGCGTCGGAGCTAGTGA
JMSF026L17+           CGAAGCCGTGCAGGAGCACCACCACGGGTTTGGATGGTTTGGCGGCGTCGGAGCTAGTGA
                      ____________________________________________________________
consensus             CGAAGCCGTGCAGGAGCACCACCACGGGTTTGGATGGTTTGGCGGCGTCGGAGCTAGTGA
 
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JMFS139B09+           CGACGACGCCGGCGTTGGAGGTAGGGATAGTGGTGGCTAATTTGTTGCGCTTCTTGGGGG
JMSF026L17+           CGACGACGCCGGCGTTGGAGGTAGGGATAGTGGTGGCTAATTTGTTGCGCTTCTTGGGGG
                      ____________________________________________________________
consensus             CGACGACGCCGGCGTTGGAGGTAGGGATAGTGGTGGCTAATTTGTTGCGCTTCTTGGGGG
 
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JMFS139B09+           TTTTGATGGTGCCGATAGGAACCCAGATGTTCATGACGGTTCCTGGCTGGATCTCGACGG
JMSF026L17+           TTTTGATGGTGCCGATAGGAACCCAGATGTTCATGACGGTTCCTGGCTGGATCTCGACGG
                      ____________________________________________________________
consensus             TTTTGATGGTGCCGATAGGAACCCAGATGTTCATGACGGTTCCTGGCTGGATCTCGACGG
 
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JMFS139B09+           CATGAGGTATAACACCAGCCATTTTCATTACGAAATGCAACAATGACTTCTGAGCTTCCA
JMSF026L17+           CATGAGGTATAACACCAGCCATTTTCATTACGAAATGCAACAATGACTTCTGAGCTTCCA
                      ____________________________________________________________
consensus             CATGAGGTATAACACCAGCCATTTTCATTACGAAATGCAACAATGACTTCTGAGCTTCCA
 
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JMFS139B09+           CAAAG                                                       
JMSF026L17+           CAAAGTTGACCATGGTGGTTTGTGAGAGTATTTTAAGAAGCTAAGCTATGACGATTATCC
                      ____________________________________________________________
consensus             CAAAGTTGACCATGGTGGTTTGTGAGAGTATTTTAAGAAGCTAAGCTATGACGATTATCC