Contig 012036:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015H12Sequence608012036 (3)ref|XP_007037817.1|1e-79Pectate lyase family protein isoform 3 [Theobroma cacao] gb|EOY22318.1| Pectate 637008237 (3)ref|XP_009788173.1|1e-50PREDICTED: probable pectate lyase 18 [Nicotiana sylvestris]
JMFF026F12Sequence507012036 (3)gb|EMT28700.1|5e-37hypothetical protein F775_17439 [Aegilops tauschii]752008237 (3)gb|AFK46866.1|2e-36unknown [Lotus japonicus]
JMSF026K02Sequence640012036 (3)ref|XP_007037817.1|1e-87Pectate lyase family protein isoform 3 [Theobroma cacao] gb|EOY22318.1| Pectate 740008237 (3)ref|XP_009762540.1|6e-84PREDICTED: probable pectate lyase 18 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF015H12+ GTGGATGTG
JMSF026K02+ TCACCATGGCGTTCCCACCCTGCTTGCAGTCGTGGATGTG
                      ____________________________________________________________
consensus TCACCATGGCGTTCCCACCCTGCTTGCAGTCGTGGATGTG
 
. : . : . : . : . : . :
JMFF015H12+ GACGCCGTGGATGATGACGTTCGTCACGTACTGCACCGTGATGCAGGGCCCGCCGGCGAT
JMSF026K02+ GACGCCGTGGATGATGACGTTCGTCACGTACTGCACCGTGATGCAGGGCCCGCCGGCGAT
                      ____________________________________________________________
consensus GACGCCGTGGATGATGACGTTCGTCACGTACTGCACCGTGATGCAGGGCCCGCCGGCGAT
 
. : . : . : . : . : . :
JMFF015H12+ GTGGACGCTGGCGCCGCGCCCGTCGATGGTCTTGAAGGAGTTCATGATCAGCTCCTCCTT
JMFF026F12+ TTGAAGGAGTTCATGATCAGCTCCTCCTT
JMSF026K02+ GTGGACGCTGGCGCCGCGCCCGTCGATGGTCTTGAAGGAGTTCATGATCAGCTCCTCCTT
                      ____________________________________________________________
consensus GTGGACGCTGGCGCCGCGCCCGTCGATGGTCTTGAAGGAGTTCATGATCAGCTCCTCCTT
 
. : . : . : . : . : . :
JMFF015H12+ CAGCTGGATCACCATGTCGCGAGCGAAGATGATCCACAGCGGCTCCTCCTGGATGACGCC
JMFF026F12+ CAGCTGGATCACCATGTCGCGAGCGAAGATGATCCACAGCGGCTCCTCCTGGATGACGCC
JMSF026K02+ CAGCTGGATCACCATGTCGCGAGCGAAGATGATCCACAGCGGCTCCTCCTGGATGACGCC
                      ____________________________________________________________
consensus CAGCTGGATCACCATGTCGCGAGCGAAGATGATCCACAGCGGCTCCTCCTGGATGACGCC
 
. : . : . : . : . : . :
JMFF015H12+ GTACCGGAGAGTCCCCGGCTTTGGGTTCACCGGGTCGTCGTTGCCGGATTCTGTCACCGT
JMFF026F12+ GTACCGGAGAGTCCCCGGCTTTGGGTTCACCGGGTCGTCGTTGCCGGATTCTGTCACCGT
JMSF026K02+ GTACCGGAGAGTCCCCGGCTTTGGGTTCACCGGGTCGTCGTTGCCGGATTCTGTCACCGT
                      ____________________________________________________________
consensus GTACCGGAGAGTCCCCGGCTTTGGGTTCACCGGGTCGTCGTTGCCGGATTCTGTCACCGT
 
. : . : . : . : . : . :
JMFF015H12+ GTAAATCTTCCCGCCTTTCCCGCCGATGGCGTTCTTGCCGAACCCGATCGCGCAGTCGGC
JMFF026F12+ GTAAATCTTCCCGCCTTTCCCGCCGATGGCGTTCTTGCCGAACCCGATCGCGCAGTCGGC
JMSF026K02+ GTAAATCTTCCCGCCTTTCCCGCCGATGGCGTTCTTGCCGAACCCGATCGCGCAGTCGGC
                      ____________________________________________________________
consensus GTAAATCTTCCCGCCTTTCCCGCCGATGGCGTTCTTGCCGAACCCGATCGCGCAGTCGGC
 
. : . : . : . : . : . :
JMFF015H12+ GAGCCTCTGCCGGTTTTTCTCCCAGTTGGGATCGCAGCGCCAGCAGTCGTCGATCGGATT
JMFF026F12+ GAGCCTCTGCCGG-TTTTCTCCCAGTTGGGATCGCAGCGCCAGCAGTCGTCGATCGGATT
JMSF026K02+ GAGCCTCTGCCGGTTTTTCTCCCAGTTGGGATCGCAGCGCCAGCAGTCGTCGATCGGATT
                      ____________________________________________________________
consensus GAGCCTCTGCCGGTTTTTCTCCCAGTTGGGATCGCAGCGCCAGCAGTCGTCGATCGGATT
 
. : . : . : . : . : . :
JMFF015H12+ TCCTGTTCCGCACGACAGATAGCCCAGGTTCCTCCTCGTTGCATTTTCGATGCTCCTATG
JMFF026F12+ TCCTGTTCCGCACGACAGATAGCCCAGGTTCCTCCTCGTTGCATTTTCAATGCTCCTATG
JMSF026K02+ TCCTGTTCCGCACGACAGATAGCCCAGGTTCCTCCTCGTTGCATTTTCGATGCTCCTATG
                      ____________________________________________________________
consensus TCCTGTTCCGCACGACAGATAGCCCAGGTTCCTCCTCGTTGCATTTTCGATGCTCCTATG
 
. : . : . : . : . : . :
JMFF015H12+ GACTTGTTGAGCAATGGCGTCGGGATCATGTACGGCGGAGGCGGCAACGAGGGAAGCAGG
JMFF026F12+ GACTTGTTGAGCAATGGCGTCGGGATCATGTACGGCGGAGGCGGCAACGATGGAAGCAGG
JMSF026K02+ GACTTGTTGAGCAATGGCGTCGGGATCATGTACGGCGGAGGCGGCAACGAGGGAAGCAGG
                      ____________________________________________________________
consensus GACTTGTTGAGCAATGGCGTCGGGATCATGTACGGCGGAGGCGGCAACGAGGGAAGCAGG
 
. : . : . : . : . : . :
JMFF015H12+ AAGAAGAGAAGACAAGAAGAAGAAGAGGAGGATTGGCATTGTGTGTTGTCTCATTGTGAT
JMFF026F12+ AAGAAGAGAAGACAAGAAGAAGAAGAGGAGGATTGGCATTGTGTGTTGTCTCATTGTGAT
JMSF026K02+ AAGAAGAGAAGACAAGAAGAAGAAGAGGAGGATTGGCATTGTGTGTTGTCTCATTGTGAT
                      ____________________________________________________________
consensus AAGAAGAGAAGACAAGAAGAAGAAGAGGAGGATTGGCATTGTGTGTTGTCTCATTGTGAT
 
. : . : . : . : . : . :
JMFF015H12+ GGTTGTATTGAAGAAGGAAACTAAGTGTATGTTATGTTGAGGAAAGAAGAGTGGGGGA
JMFF026F12+ GGTTGTATTGAAGAAGGAAACTAAGTGTATGTTATGTTGAGGAAAGAAGAGTGGGGGA
JMSF026K02+ GGTTGTATTGAAGAAGGAAACTAAGTGTATGTTATGTTGAGGAAAGAAGAGTGGGGGACC
                      ____________________________________________________________
consensus GGTTGTATTGAAGAAGGAAACTAAGTGTATGTTATGTTGAGGAAAGAAGAGTGGGGGACC