Contig 012036:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015H12Sequence608012036 (3)ref|XP_007037817.1|1e-79Pectate lyase family protein isoform 3 [Theobroma cacao] gb|EOY22318.1| Pectate 637008237 (3)ref|XP_009788173.1|1e-50PREDICTED: probable pectate lyase 18 [Nicotiana sylvestris]
JMFF026F12Sequence507012036 (3)gb|EMT28700.1|5e-37hypothetical protein F775_17439 [Aegilops tauschii]752008237 (3)gb|AFK46866.1|2e-36unknown [Lotus japonicus]
JMSF026K02Sequence640012036 (3)ref|XP_007037817.1|1e-87Pectate lyase family protein isoform 3 [Theobroma cacao] gb|EOY22318.1| Pectate 740008237 (3)ref|XP_009762540.1|6e-84PREDICTED: probable pectate lyase 18 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF015H12+                                                              GTGGATGTG
JMSF026K02+                               TCACCATGGCGTTCCCACCCTGCTTGCAGTCGTGGATGTG
                      ____________________________________________________________
consensus                                 TCACCATGGCGTTCCCACCCTGCTTGCAGTCGTGGATGTG
 
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JMFF015H12+           GACGCCGTGGATGATGACGTTCGTCACGTACTGCACCGTGATGCAGGGCCCGCCGGCGAT
JMSF026K02+           GACGCCGTGGATGATGACGTTCGTCACGTACTGCACCGTGATGCAGGGCCCGCCGGCGAT
                      ____________________________________________________________
consensus             GACGCCGTGGATGATGACGTTCGTCACGTACTGCACCGTGATGCAGGGCCCGCCGGCGAT
 
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JMFF015H12+           GTGGACGCTGGCGCCGCGCCCGTCGATGGTCTTGAAGGAGTTCATGATCAGCTCCTCCTT
JMFF026F12+                                          TTGAAGGAGTTCATGATCAGCTCCTCCTT
JMSF026K02+           GTGGACGCTGGCGCCGCGCCCGTCGATGGTCTTGAAGGAGTTCATGATCAGCTCCTCCTT
                      ____________________________________________________________
consensus             GTGGACGCTGGCGCCGCGCCCGTCGATGGTCTTGAAGGAGTTCATGATCAGCTCCTCCTT
 
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JMFF015H12+           CAGCTGGATCACCATGTCGCGAGCGAAGATGATCCACAGCGGCTCCTCCTGGATGACGCC
JMFF026F12+           CAGCTGGATCACCATGTCGCGAGCGAAGATGATCCACAGCGGCTCCTCCTGGATGACGCC
JMSF026K02+           CAGCTGGATCACCATGTCGCGAGCGAAGATGATCCACAGCGGCTCCTCCTGGATGACGCC
                      ____________________________________________________________
consensus             CAGCTGGATCACCATGTCGCGAGCGAAGATGATCCACAGCGGCTCCTCCTGGATGACGCC
 
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JMFF015H12+           GTACCGGAGAGTCCCCGGCTTTGGGTTCACCGGGTCGTCGTTGCCGGATTCTGTCACCGT
JMFF026F12+           GTACCGGAGAGTCCCCGGCTTTGGGTTCACCGGGTCGTCGTTGCCGGATTCTGTCACCGT
JMSF026K02+           GTACCGGAGAGTCCCCGGCTTTGGGTTCACCGGGTCGTCGTTGCCGGATTCTGTCACCGT
                      ____________________________________________________________
consensus             GTACCGGAGAGTCCCCGGCTTTGGGTTCACCGGGTCGTCGTTGCCGGATTCTGTCACCGT
 
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JMFF015H12+           GTAAATCTTCCCGCCTTTCCCGCCGATGGCGTTCTTGCCGAACCCGATCGCGCAGTCGGC
JMFF026F12+           GTAAATCTTCCCGCCTTTCCCGCCGATGGCGTTCTTGCCGAACCCGATCGCGCAGTCGGC
JMSF026K02+           GTAAATCTTCCCGCCTTTCCCGCCGATGGCGTTCTTGCCGAACCCGATCGCGCAGTCGGC
                      ____________________________________________________________
consensus             GTAAATCTTCCCGCCTTTCCCGCCGATGGCGTTCTTGCCGAACCCGATCGCGCAGTCGGC
 
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JMFF015H12+           GAGCCTCTGCCGGTTTTTCTCCCAGTTGGGATCGCAGCGCCAGCAGTCGTCGATCGGATT
JMFF026F12+           GAGCCTCTGCCGG-TTTTCTCCCAGTTGGGATCGCAGCGCCAGCAGTCGTCGATCGGATT
JMSF026K02+           GAGCCTCTGCCGGTTTTTCTCCCAGTTGGGATCGCAGCGCCAGCAGTCGTCGATCGGATT
                      ____________________________________________________________
consensus             GAGCCTCTGCCGGTTTTTCTCCCAGTTGGGATCGCAGCGCCAGCAGTCGTCGATCGGATT
 
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JMFF015H12+           TCCTGTTCCGCACGACAGATAGCCCAGGTTCCTCCTCGTTGCATTTTCGATGCTCCTATG
JMFF026F12+           TCCTGTTCCGCACGACAGATAGCCCAGGTTCCTCCTCGTTGCATTTTCAATGCTCCTATG
JMSF026K02+           TCCTGTTCCGCACGACAGATAGCCCAGGTTCCTCCTCGTTGCATTTTCGATGCTCCTATG
                      ____________________________________________________________
consensus             TCCTGTTCCGCACGACAGATAGCCCAGGTTCCTCCTCGTTGCATTTTCGATGCTCCTATG
 
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JMFF015H12+           GACTTGTTGAGCAATGGCGTCGGGATCATGTACGGCGGAGGCGGCAACGAGGGAAGCAGG
JMFF026F12+           GACTTGTTGAGCAATGGCGTCGGGATCATGTACGGCGGAGGCGGCAACGATGGAAGCAGG
JMSF026K02+           GACTTGTTGAGCAATGGCGTCGGGATCATGTACGGCGGAGGCGGCAACGAGGGAAGCAGG
                      ____________________________________________________________
consensus             GACTTGTTGAGCAATGGCGTCGGGATCATGTACGGCGGAGGCGGCAACGAGGGAAGCAGG
 
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JMFF015H12+           AAGAAGAGAAGACAAGAAGAAGAAGAGGAGGATTGGCATTGTGTGTTGTCTCATTGTGAT
JMFF026F12+           AAGAAGAGAAGACAAGAAGAAGAAGAGGAGGATTGGCATTGTGTGTTGTCTCATTGTGAT
JMSF026K02+           AAGAAGAGAAGACAAGAAGAAGAAGAGGAGGATTGGCATTGTGTGTTGTCTCATTGTGAT
                      ____________________________________________________________
consensus             AAGAAGAGAAGACAAGAAGAAGAAGAGGAGGATTGGCATTGTGTGTTGTCTCATTGTGAT
 
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JMFF015H12+           GGTTGTATTGAAGAAGGAAACTAAGTGTATGTTATGTTGAGGAAAGAAGAGTGGGGGA  
JMFF026F12+           GGTTGTATTGAAGAAGGAAACTAAGTGTATGTTATGTTGAGGAAAGAAGAGTGGGGGA  
JMSF026K02+           GGTTGTATTGAAGAAGGAAACTAAGTGTATGTTATGTTGAGGAAAGAAGAGTGGGGGACC
                      ____________________________________________________________
consensus             GGTTGTATTGAAGAAGGAAACTAAGTGTATGTTATGTTGAGGAAAGAAGAGTGGGGGACC