Contig 012033:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024E17Sequence673012033 (3)ref|XP_009766350.1|4e-88PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Nicotiana sylvestris]730013982 (2)gb|AIU49489.1|2e-77RNA helicase 36, partial [Vitis vinifera]
JMSF026D15Sequence682012033 (3)ref|XP_009766350.1|7e-90PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Nicotiana sylvestris]781013982 (2)gb|AIU49489.1|2e-65RNA helicase 36, partial [Vitis vinifera]
JMSF038K01Sequence670012033 (3)ref|XP_009766350.1|2e-87PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+                                                            ATCTAGAACTA
JMSF024E17+                                                            ATCTAGAACTA
JMSF026D15+                                                 CTATCAGCTTCATCTAGAACTA
                      ____________________________________________________________
consensus                                                   CTATCAGCTTCATCTAGAACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+           GAAACTTGGTTTTGGAGAAAACGGAAGGAATATCAGGATTCTGTTGGAGCAGAGTTTTGA
JMSF024E17+           GAAACTTGGTTTTGGAGAAAACGGAAGGAATATCAGGATTCTGTTGGAGCAGAGTTTTGA
JMSF026D15+           GAAACTTGGTTTTGGAGAAAACGGAAGGAATATCAGGATTCTGTTGGAGCAGAGTTTTGA
                      ____________________________________________________________
consensus             GAAACTTGGTTTTGGAGAAAACGGAAGGAATATCAGGATTCTGTTGGAGCAGAGTTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+           TTCTTCCGGGAGTAGCTATTACAACGTGGGGTCTTTGCATAAGAGTTTTGGCCTGATTGA
JMSF024E17+           TTCTTCCGGGAGTAGCTATTACAACGTGGGGTCTTTGCATAAGAGTTTTGGCCTGATTGA
JMSF026D15+           TTCTTCCGGGAGTAGCTATTACAACGTGGGGTCTTTGCATAAGAGTTTTGGCCTGATTGA
                      ____________________________________________________________
consensus             TTCTTCCGGGAGTAGCTATTACAACGTGGGGTCTTTGCATAAGAGTTTTGGCCTGATTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+           TGGAATCCATCCCTCCAACCACCTCTACGCACCGCAAGTTCAAGCAGGAACCCAGGGCGC
JMSF024E17+           TGGAATCCATCCCTCCAACCACCTCTACGCACCGCAAGTTCAAGCAGGAACCCAGGGCGC
JMSF026D15+           TGGAATCCATCCCTCCAACCACCTCTACGCACCGCAAGTTCAAGCAGGAACCCAGGGCGC
                      ____________________________________________________________
consensus             TGGAATCCATCCCTCCAACCACCTCTACGCACCGCAAGTTCAAGCAGGAACCCAGGGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+           GAAACTGCTCGGCGAGTTGGCACGCGAGCTCCCGGGTGGGGGTGACGACGAGAGCGAACA
JMSF024E17+           GAAACTGCTCGGCGAGTTGGCACGCGAGCTCCCGGGTGGGGGTGACGACGAGAGCGAACA
JMSF026D15+           GAAACTGCTCGGCGAGTTGGCACGCGAGCTCCCGGGTGGGGGTGACGACGAGAGCGAACA
                      ____________________________________________________________
consensus             GAAACTGCTCGGCGAGTTGGCACGCGAGCTCCCGGGTGGGGGTGACGACGAGAGCGAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+           CTCCGTAGGGATCCTGGGCGAGGAGGTTGAGGAGAGGAAGGGCGAAGGCCGCCGTTTTGC
JMSF024E17+           CTCCGTAGGGATCCTGGGCGAGGAGGTTGAGGAGAGGAAGGGCGAAGGCCGCCGTTTTGC
JMSF026D15+           CTCCGTAGGGATCCTGGGCGAGGAGGTTGAGGAGAGGAAGGGCGAAGGCCGCCGTTTTGC
                      ____________________________________________________________
consensus             CTCCGTAGGGATCCTGGGCGAGGAGGTTGAGGAGAGGAAGGGCGAAGGCCGCCGTTTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+           CGCTACCGGTCTGGGCGATGCCCAAGACGTCTTGGCCGGCGAGGATTCTGGGAATGCAGT
JMSF024E17+           CGCTACCGGTCTGGGCGATGCCCAAGACGTCTTGGCCGGCGAGGATTCTGGGAATGCAGT
JMSF026D15+           CGCTACCGGTCTGGGCGATGCCCAAGACGTCTTGGCCGGCGAGGATTCTGGGAATGCAGT
                      ____________________________________________________________
consensus             CGCTACCGGTCTGGGCGATGCCCAAGACGTCTTGGCCGGCGAGGATTCTGGGAATGCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+           GGCGTTGAACGGGAGTAGGTTTCTTCATGCCGAGCTCTTTGCAGGTCTGGAGGGCCCATT
JMSF024E17+           GGCGTTGAACGGGAGTAGGTTTCTTCATGCCGAGCTCTTTGCAGGTCTGGAGGGCCCATT
JMSF026D15+           GGCGTTGAACGGGAGTAGGTTTCTTCATGCCGAGCTCTTTGCAGGTCTGGAGGGCCCATT
                      ____________________________________________________________
consensus             GGCGTTGAACGGGAGTAGGTTTCTTCATGCCGAGCTCTTTGCAGGTCTGGAGGGCCCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+           CCGAGAGGCCTAAGTCGGAAAAGGAGATGTGGTTGGTGGCGGTGGGATTGGAGTCGCTCT
JMSF024E17+           CCGAGAGGCCTAAGTCGGAAAAGGAGATGTGGTTGGTGGCGGTGGGATTGGAGTCGCTCT
JMSF026D15+           CCGAGAGGCCTAAGTCGGAAAAGGAGATGTGGTTGGTGGCGGTGGGATTGGAGTCGCTCT
                      ____________________________________________________________
consensus             CCGAGAGGCCTAAGTCGGAAAAGGAGATGTGGTTGGTGGCGGTGGGATTGGAGTCGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+           CCTTGTCGAGCTTCTTAGGGTTTTCGGCGGCGGCGGTGCTGGGAGGGGCGGCGGCGGAAT
JMSF024E17+           CCTTGTCGAGCTTCTTAGGGTTTTCGGCGGCGGCGGTGCTGGGAGGGGCGGCGGCGGAAT
JMSF026D15+           CCTTGTCGAGCTTCTTAGGGTTTTCGGCGGCGGCGGTGCTGGGAGGGGCGGCGGCGGAAT
                      ____________________________________________________________
consensus             CCTTGTCGAGCTTCTTAGGGTTTTCGGCGGCGGCGGTGCTGGGAGGGGCGGCGGCGGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+           TGGTGGTTGTGGGTTTATGCGATAGTTTTTTGCGCGAAAATAAAGGGAAATTTTCGCCGA
JMSF024E17+           TGGTGGTTGTGGGTTTATGCGATAGTTTTTTGCGCGAAAATAAAGGGAAATTTTCGCCGA
JMSF026D15+           TGGTGGTTGTGGGTTTATGCGATAGTTTTTTGCGCGAAAATAAAGGGAAATTTTCGCCGA
                      ____________________________________________________________
consensus             TGGTGGTTGTGGGTTTATGCGATAGTTTTTTGCGCGAAAATAAAGGGAAATTTTCGCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038K01+           TTGTGATATCTTGCTCGTCCATATTTTTTCTCTTTGATTTGATAGATCTCTCGGACGC  
JMSF024E17+           TTGTGATATCTTGCTCGTCCATATTTTTTCTCTTTGATTTGATAGATCTCTCGGACGC  
JMSF026D15+           TTGTGATATCTTGCTCGTCCATATTTTTTCTCTTTGATTTGATAGATCTCTCGGACGCAC
                      ____________________________________________________________
consensus             TTGTGATATCTTGCTCGTCCATATTTTTTCTCTTTGATTTGATAGATCTCTCGGACGCAC