clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF022H20 | Sequence | 496 | 012029 (3) | ref|XP_009610915.1| | 9e-57 | PREDICTED: FRIGIDA-like protein 4a [Nicotiana tomentosiformis] | 691 | 013708 (4) | ref|XP_006360794.1| | 9e-24 | PREDICTED: FRIGIDA-like protein 4a-like [Solanum tuberosum] |
JMSF025M20 | Sequence | 583 | 012029 (3) | ref|XP_009610915.1| | 4e-56 | PREDICTED: FRIGIDA-like protein 4a [Nicotiana tomentosiformis] | 736 | 013708 (4) | ref|XP_006419936.1| | 1e-45 | hypothetical protein CICLE_v100047531mg, partial [Citrus clementina] gb|ESR33176 |
JMSF044E02 | Sequence | 567 | 012029 (3) | ref|XP_009784382.1| | 3e-56 | PREDICTED: FRIGIDA-like protein 4a [Nicotiana sylvestris] | 815 | 013708 (4) | ref|XP_006419936.1| | 7e-57 | hypothetical protein CICLE_v100047531mg, partial [Citrus clementina] gb|ESR33176 |
This contig is upended
. : . : . : . : . : . :
JMFF022H20+ TTCTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
JMSF044E02+ TTCTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
JMSF025M20+ CTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
____________________________________________________________
consensus TTCTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
. : . : . : . : . : . :
JMFF022H20+ TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
JMSF044E02+ TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
JMSF025M20+ TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
____________________________________________________________
consensus TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
. : . : . : . : . : . :
JMFF022H20+ TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
JMSF044E02+ TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
JMSF025M20+ TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
____________________________________________________________
consensus TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
. : . : . : . : . : . :
JMFF022H20+ CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
JMSF044E02+ CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
JMSF025M20+ CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
____________________________________________________________
consensus CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
. : . : . : . : . : . :
JMFF022H20+ TTCTCCAGAGCCTCGAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
JMSF044E02+ TTCTCCAGAGCCTCAAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
JMSF025M20+ TTCTCCAGAGCCTCGAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
____________________________________________________________
consensus TTCTCCAGAGCCTCGAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
. : . : . : . : . : . :
JMFF022H20+ AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
JMSF044E02+ AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
JMSF025M20+ AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
____________________________________________________________
consensus AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
. : . : . : . : . : . :
JMFF022H20+ TTCCATAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
JMSF044E02+ TTCCATAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
JMSF025M20+ TTCCACAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
____________________________________________________________
consensus TTCCATAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
. : . : . : . : . : . :
JMFF022H20+ AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
JMSF044E02+ AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
JMSF025M20+ AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
____________________________________________________________
consensus AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
. : . : . : . : . : . :
JMFF022H20+ CGGCGATGGAAGAGAGAGAAATGGGAATGGT
JMSF044E02+ CGGCGATGGAAGAGAGAGAAATGGGAATGGTAGTGAGATGAAGTTTGGTGGAGTGGCGAT
JMSF025M20+ CGGCGATGGAAGAGAGAGAAATGGGAATGGTAGTGAGATGAAGTTTGGTGGAGTGGCGAT
____________________________________________________________
consensus CGGCGATGGAAGAGAGAGAAATGGGAATGGTAGTGAGATGAAGTTTGGTGGAGTGGCGAT
. : . : . : . : . : . :
JMSF044E02+ AAAGCGACAGAGGATGAAGGAGTGCTGACATGTACCCAGAC
JMSF025M20+ AAAGCGACAGAGGATGAAGGAGTGCTGACATGTACCCAGACAGACTGGTTGGGAATGTTC
____________________________________________________________
consensus AAAGCGACAGAGGATGAAGGAGTGCTGACATGTACCCAGACAGACTGGTTGGGAATGTTC