Contig 012029:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022H20Sequence496012029 (3)ref|XP_009610915.1|9e-57PREDICTED: FRIGIDA-like protein 4a [Nicotiana tomentosiformis]691013708 (4)ref|XP_006360794.1|9e-24PREDICTED: FRIGIDA-like protein 4a-like [Solanum tuberosum]
JMSF025M20Sequence583012029 (3)ref|XP_009610915.1|4e-56PREDICTED: FRIGIDA-like protein 4a [Nicotiana tomentosiformis]736013708 (4)ref|XP_006419936.1|1e-45hypothetical protein CICLE_v100047531mg, partial [Citrus clementina] gb|ESR33176
JMSF044E02Sequence567012029 (3)ref|XP_009784382.1|3e-56PREDICTED: FRIGIDA-like protein 4a [Nicotiana sylvestris]815013708 (4)ref|XP_006419936.1|7e-57hypothetical protein CICLE_v100047531mg, partial [Citrus clementina] gb|ESR33176

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022H20+                          TTCTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
JMSF044E02+                          TTCTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
JMSF025M20+                            CTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
                      ____________________________________________________________
consensus                            TTCTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022H20+           TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
JMSF044E02+           TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
JMSF025M20+           TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
                      ____________________________________________________________
consensus             TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022H20+           TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
JMSF044E02+           TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
JMSF025M20+           TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
                      ____________________________________________________________
consensus             TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022H20+           CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
JMSF044E02+           CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
JMSF025M20+           CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
                      ____________________________________________________________
consensus             CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022H20+           TTCTCCAGAGCCTCGAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
JMSF044E02+           TTCTCCAGAGCCTCAAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
JMSF025M20+           TTCTCCAGAGCCTCGAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
                      ____________________________________________________________
consensus             TTCTCCAGAGCCTCGAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022H20+           AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
JMSF044E02+           AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
JMSF025M20+           AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
                      ____________________________________________________________
consensus             AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022H20+           TTCCATAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
JMSF044E02+           TTCCATAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
JMSF025M20+           TTCCACAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
                      ____________________________________________________________
consensus             TTCCATAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022H20+           AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
JMSF044E02+           AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
JMSF025M20+           AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
                      ____________________________________________________________
consensus             AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022H20+           CGGCGATGGAAGAGAGAGAAATGGGAATGGT                             
JMSF044E02+           CGGCGATGGAAGAGAGAGAAATGGGAATGGTAGTGAGATGAAGTTTGGTGGAGTGGCGAT
JMSF025M20+           CGGCGATGGAAGAGAGAGAAATGGGAATGGTAGTGAGATGAAGTTTGGTGGAGTGGCGAT
                      ____________________________________________________________
consensus             CGGCGATGGAAGAGAGAGAAATGGGAATGGTAGTGAGATGAAGTTTGGTGGAGTGGCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E02+           AAAGCGACAGAGGATGAAGGAGTGCTGACATGTACCCAGAC                   
JMSF025M20+           AAAGCGACAGAGGATGAAGGAGTGCTGACATGTACCCAGACAGACTGGTTGGGAATGTTC
                      ____________________________________________________________
consensus             AAAGCGACAGAGGATGAAGGAGTGCTGACATGTACCCAGACAGACTGGTTGGGAATGTTC