Contig 012025:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020G20Sequence626012025 (3)ref|XP_002280814.1|5e-30PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator832012025 (3)gb|ABO07414.1|1e-16SMC3 [Solanum lycopersicum]
JMSF025H04Sequence641012025 (3)ref|XP_011091178.1|7e-25PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator795024580emb|CDP15621.1|7e-06unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF020G20-                                                   GTTTTAACTCCCAAACCAA
                      ____________________________________________________________
consensus                                                      GTTTTAACTCCCAAACCAA
 
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rJMSF020G20-          GAAAGCTTTCTAAGAAGCCAGTACAAGAATGCTTATTAATCCATTGACATTCAAAAGGAA
                      ____________________________________________________________
consensus             GAAAGCTTTCTAAGAAGCCAGTACAAGAATGCTTATTAATCCATTGACATTCAAAAGGAA
 
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rJMSF020G20-          ATCAAAAGGCCAAATTTCATAACAAGATGATAAACATTGTCTAAATCCACATCAAGTTAA
                      ____________________________________________________________
consensus             ATCAAAAGGCCAAATTTCATAACAAGATGATAAACATTGTCTAAATCCACATCAAGTTAA
 
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rJMSF020G20-          AGTGGCCTAGGGAAAGTCCCAGTCTCCCTGTGTTCATTCCATCTTTCAACCCATTAGCAC
                      ____________________________________________________________
consensus             AGTGGCCTAGGGAAAGTCCCAGTCTCCCTGTGTTCATTCCATCTTTCAACCCATTAGCAC
 
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rJMSF020G20-          TGCTCTTGTGGTGTTTCATCCTGAGTTTGCTCTTGAGGTGTATCATTATCATGAGTTTGT
                      ____________________________________________________________
consensus             TGCTCTTGTGGTGTTTCATCCTGAGTTTGCTCTTGAGGTGTATCATTATCATGAGTTTGT
 
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rJMSF020G20-          TCATGATTTGGAAATGTATCTTCATGTGGTGCATCATTCAACAATTGCTCGTGTGTTGAC
                      ____________________________________________________________
consensus             TCATGATTTGGAAATGTATCTTCATGTGGTGCATCATTCAACAATTGCTCGTGTGTTGAC
 
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rJMSF020G20-          GTAGAAGATTGTTGTTAAGACCTTGGCCGACTCTCATATCCATGAACCTTTTTGATCTTG
                      ____________________________________________________________
consensus             GTAGAAGATTGTTGTTAAGACCTTGGCCGACTCTCATATCCATGAACCTTTTTGATCTTG
 
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rJMSF020G20-          GCATACCTTTTTCTCGAATCTTCTTCGAATACTCATTTTGTTTTGCAAGATAGGTTTTCC
                      ____________________________________________________________
consensus             GCATACCTTTTTCTCGAATCTTCTTCGAATACTCATTTTGTTTTGCAAGATAGGTTTTCC
 
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rJMSF020G20-          TTTTATTTAAGAGTTGCTCCAATTCTCTCTCCTCCTCCTGAAGGGTATCCTGATAATTTT
                      ____________________________________________________________
consensus             TTTTATTTAAGAGTTGCTCCAATTCTCTCTCCTCCTCCTGAAGGGTATCCTGATAATTTT
 
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rJMSF020G20-          CTTCCATAGCCTTCAAGTCGTCTTTTTCCTCTTTGATCTGTTTGAGCTTCTTGCTTCTAT
                      ____________________________________________________________
consensus             CTTCCATAGCCTTCAAGTCGTCTTTTTCCTCTTTGATCTGTTTGAGCTTCTTGCTTCTAT
 
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rJMSF020G20-          CATTTATGCTTTCAGAAACTCTTGTAAGCTGTTGGGTCAAGTTTTCAACTAATATATGAG
JMSF020G20+                               CTTGTAAGCTGTTGGGTCAAGTTTTCAACTAATATATGAG
                      ____________________________________________________________
consensus             CATTTATGCTTTCAGAAACTCTTGTAAGCTGTTGGGTCAAGTTTTCAACTAATATATGAG
 
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rJMSF020G20-          CCTCCACTACTTCCTGCCCCTTTAATACAGGAGCTGTTATAATTGCAGTTGCAGAGCAAT
JMSF020G20+           CCTCCACTACTTCCTGCCCCTTTAATACAGGAGCTGTTATAATTGCAGTTGCAGAGCAAT
                      ____________________________________________________________
consensus             CCTCCACTACTTCCTGCCCCTTTAATACAGGAGCTGTTATAATTGCAGTTGCAGAGCAAT
 
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rJMSF020G20-          TGTCATTACAGTTTTCCCCAGGCCCATAGCATTACCCATCTTGTTTTCACTAGAGAAAAN
JMSF020G20+           TGTCATTACAGTTTTCCCCAGGCCCATAGCATTACCCATCTTGTTTTCACTAGAGAAAAT
JMSF025H04+                              AGGCCAATAGCATTCCCCATCTTCTTTTCACTAGAGAAAAT
                      ____________________________________________________________
consensus             TGTCATTACAGTTTTCCCCAGGCCCATAGCATTACCCATCTTGTTTTCACTAGAGAAAAT
 
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rJMSF020G20-          GTTCACATAAATTGCAGAACCCCTCTCATCACAAATTCGATATGCTGNCCAACATGGATG
JMSF020G20+           GTTCACATAAATTGCAGAACCCCTCTCATCACAAATTCGATATGCTGCCCAACATGGATG
JMSF025H04+           GTTCACATAAATTGCAGGACCCCTCTCATCACAAATTCGATATGCTGCCCAACATGGATG
                      ____________________________________________________________
consensus             GTTCACATAAATTGCAGAACCCCTCTCATCACAAATTCGATATGCTGCCCAACATGGATG
 
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rJMSF020G20-          CAAAACTTNGGTCGTTTGCTCTGCCTCAGT                              
JMSF020G20+           CAAAACTTTGGTCGTTTGCTCTGCCTCAGTTCCCTTCTCCAATTCTGACATCCAGTAAAG
JMSF025H04+           CAAAACTATGGTTGTTTGCTCTGCCTCAGTTCCCTTCTCCAATTCTGACATCCAGTAAAG
                      ____________________________________________________________
consensus             CAAAACTTTGGTCGTTTGCTCTGCCTCAGTTCCCTTCTCCAATTCTGACATCCAGTAAAG
 
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JMSF020G20+           AGCTTGTTTCTGGTAGGGCCTTAGGCAACACACAAGTGTTTCAGGTGGC-TTATCTCATT
JMSF025H04+           AGCCTGTTTCTGGTAGGGCCTTAGGCAACACACAAGTGTTTCAGGTGGCTTTATCTCATT
                      ____________________________________________________________
consensus             AGCTTGTTTCTGGTAGGGCCTTAGGCAACACACAAGTGTTTCAGGTGGCTTTATCTCATT
 
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JMSF020G20+           TGTCTCTGGATGGTTTAACCTCAAGCTTTCACATGCATACTGATTCAAATCAACAGTCCA
JMSF025H04+           TGTCTCTGGATGGCTTAACCTCAAGCTTTCACATGCATACTGATTCAAATCAACAGTCCA
                      ____________________________________________________________
consensus             TGTCTCTGGATGGTTTAACCTCAAGCTTTCACATGCATACTGATTCAAATCAACAGTCCA
 
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JMSF020G20+           TTT                                                         
JMSF025H04+           TTTAGCAACCAGATTAGCACCACAACTATTAGCTCCTAAACATAATCATGTAAACATTGC
                      ____________________________________________________________
consensus             TTTAGCAACCAGATTAGCACCACAACTATTAGCTCCTAAACATAATCATGTAAACATTGC
 
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JMSF025H04+           TCCATAATTGTTAAGAGATCTTCTATTCTCCTATGATCCTATCCACCACGTTGTTGAATT
                      ____________________________________________________________
consensus             TCCATAATTGTTAAGAGATCTTCTATTCTCCTATGATCCTATCCACCACGTTGTTGAATT
 
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JMSF025H04+           CCTTGAGTTCCCAGTAAGTATGTCTTCGGCGGTAGCGGGAGGTGGCGGACTGGCGGTTGA
                      ____________________________________________________________
consensus             CCTTGAGTTCCCAGTAAGTATGTCTTCGGCGGTAGCGGGAGGTGGCGGACTGGCGGTTGA
 
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JMSF025H04+           TCTGCTGCGTCAGCAACGGCGGCAGGGAGAGGGAGCGAGAGGTGGCGTCTGACCTTCTAA
                      ____________________________________________________________
consensus             TCTGCTGCGTCAGCAACGGCGGCAGGGAGAGGGAGCGAGAGGTGGCGTCTGACCTTCTAA
 
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JMSF025H04+           GTCATCGGCAGCAGCGGGAGGTGGCGGACTGGCGGTTGATCTGCTGCGTCGGCGTTGATG
                      ____________________________________________________________
consensus             GTCATCGGCAGCAGCGGGAGGTGGCGGACTGGCGGTTGATCTGCTGCGTCGGCGTTGATG
 
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JMSF025H04+           TTCCTCCTCGTGAGCGGCAATGGCGTCTCCACTCTCCAGGAGTCCAAAGAGGCAGCGAGC
                      ____________________________________________________________
consensus             TTCCTCCTCGTGAGCGGCAATGGCGTCTCCACTCTCCAGGAGTCCAAAGAGGCAGCGAGC